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The Software is a toolbox for Dynamic Programming and Adaptive Dynamic Programming (ADP) that enables stochastic, multi-period decision optimization for arbitrary "black box" models. It’s modular framework is designed to serve as a wrapper for other simulation tools. This enables forward-looking optimization under uncertainty to aid decision making by a variety of stakeholders when facing an increasingly uncertain future.
The randomness introduced by reactants is an issue when processing renewable bioresources. In this paper, we apply tools from dynamic stochastic programming theory to the biochemical process. Instead of introducing extra preprocessing units, we consider the inherent randomness of the process and optimize in expectation the performance of the system. In a general setting, this is a multistage stochastic optimization problem and we investigate its approximate solution via two approaches, namely stochastic dual dynamic programming (SDDP) and the finite state, finite action Markov decision process (MDP) framework. These two methods are implemented to a case study of lignin valorization that is crucial to a cost-effective biorefinery process using biomass as the feedstock.
Highly-optimized parallel molecular dynamics programs have allowed researchers to achieve ground-breaking results in biological and materials sciences. This type of performance has come at the expense of portability: a significant effort is required for performance optimization on each new architecture. Using a metric that emphasizes speedup, we assess key accelerating programming components of four different best-performing molecular dynamics programs - GROMACS, NAMD, LAMMPS and CP2K-- each having a particular scope of application, for contribution to performance and for portability. We use builds with and without these components, tested on HPC systems. We also analyze the code-bases to determine compliance with portability recommendations. We find that for all four programs, the contributions of the non-portable components to speed are essential to the programs' performances; without them we see a reduction in time-to-solution of a magnitude that is insufferable to domain scientists. This characterizes the performance efficiency that must be approached for good performance portability on a programmatic level, suggesting solutions to this difficult problem, which should come from developers, industry and funding institutions, and possibly new research in programming languages.
Dynamic programming algorithms within the NUPACK software suite enable analysis of equilibrium base-pairing properties for complex and test tube ensembles containing arbitrary numbers of interacting nucleic acid strands. Currently, calculations are limited to single-material systems that are either all-RNA or all-DNA. Here, to enable analysis of mixed-material systems that are critical for modern applications in vitro, in situ, and in vivo, we develop physical models and dynamic programming algorithms that allow the material of the system to be specified at nucleotide resolution. Free energy parameter sets are constructed for both RNA/DNA and RNA/2'OMe-RNA mixed-material systems by combining available empirical mixed-material parameters with single-material parameter sets to enable treatment of the full complex and test tube ensembles. New dynamic programming recursions account for the material of each nucleotide throughout the recursive process. For a complex with N nucleotides, the mixed-material dynamic programming algorithms maintain the O(N 3 ) time complexity of the single-material algorithms, enabling efficient calculation of diverse physical quantities over complex and test tube ensembles (e.g., complex partition function, equilibrium complex concentrations, equilibrium base-pairing probabilities, minimum free energy secondary structure(s), and Boltzmann-sampled secondary structures) at a cost increase of roughly 2.0-3.5×. The results of existing single-material algorithms are exactly reproduced when applying the new mixed-material algorithms to single-material systems. Accuracy is significantly enhanced using mixed-material models and algorithms to predict RNA/DNA and RNA/2'OMe-RNA duplex melting temperatures from the experimental literature as well as RNA/DNA melt profiles from new experiments. In conclusion, mixed-material analyses can be performed online using the NUPACK web app (www.nupack.org) or locally using the NUPACK Python module.
To address the uncertain renewable energy in the day-ahead optimal dispatch of energy and reserve, a multi-stage stochastic programming model is established in this paper to minimize the expected total costs. The uncertainties over the multiple stages are characterized by a scenario tree and the optimal dispatch scheme is cast as a decision tree which guarantees the flexibility to decide the reasonable outputs of generation and the adequate reserves accounting for different realizations of renewable energy. Most importantly, to deal with the “Curse of Dimensionality” of stochastic programming, stochastic dual dynamic programming (SDDP) is employed, which decomposes the original problem into several sub-problems according to the stages. Specifically, the SDDP algorithm performs forward pass and backward pass repeatedly until the convergence criterion is satisfied. At each iteration, the original problem is approximated by creating a linear piecewise function. Besides, an improved convergence criterion is adopted to narrow the optimization gaps. The results on the IEEE 118-bus system and real-life provincial power grid show the effectiveness of the proposed model and method.
In this research three artificial intelligent (AI)-based techniques are proposed to regulate the voltage and frequency of a grid-connected inverter. The increase in the penetration of renewable energy sources (RESs) into the power grid has led to the increase in the penetration of fast-responding inertia-less power converters. The increase in the penetration of these power electronics converters changes the nature of the conventional grid, in which the existing kinetic inertia in the rotating parts of the enormous generators plays a vital role. The concept of virtual inertia control scheme is proposed to make the behavior of grid connected inverters more similar to the synchronous generators, by mimicking the mechanical behavior of a synchronous generator. Conventional control techniques lack to perform optimally in nonlinear, uncertain, inaccurate power grids. Besides, the decoupled control assumption in conventional VSGs makes them nonoptimal in resistive grids. The neural network predictive controller, the heuristic dynamic programming, and the dual heuristic dynamic programming techniques are presented in this research to overcome the draw backs of conventional VSGs. The nonlinear characteristics of neural networks, and the online training enable the proposed methods to perform as robust and optimal controllers. The simulation and the experimental laboratory prototype results are provided to demonstrate the effectiveness of the proposed techniques.
To take full advantage of the considerably high reporting rate of phasor measurement units (PMU) data, this paper develops a novel PMU-based event detection methodology. Considering the huge amount of streaming PMU data, a data compression algorithm, swinging door trending (SDT), is first used to compress the PMU data and generate multiple compression intervals. Then dynamic programming is utilized to solve the optimization problem, which is recursively constituted by a score function. Based on predefined PMU event rules, dynamic programming merges adjacent compression intervals with the same slope direction. Finally, all the PMU event features are characterized. A conventional wavelet-based event detection method is compared with the developed dynamic programming based SDT (DPSDT) method. Numerical simulations on the real-time and synthetic PMU data show that the DPSDT method can accurately detect the start-time of an event and the event placement with relatively high precision. Furthermore, the PMU event features, including the magnitude and duration of strokes, are characterized.
Abstract The hybrid hydraulic electric architecture (HHEA) seeks to combine the high power/torque/force density of hydraulics with the efficiency of electric machines. A set of common pressure rails is used to provide a majority of the power and this power is modulated by small electric machines to provide precise control for the operator. The HHEA has been studied in previous work using off-line dynamic programming optimization to determine energy efficient pressure rail selections, but this approach requires drive cycle information apriori. A Lagrange multiplier method has also been investigated where a set of gains (Lagrange multipliers) are optimized off-line with the idea the these gains, once determined, could be used for real-time operation. In this work, three new real-time pressure rail selection algorithms that do not require future drive cycle information are investigated; greedy, torque minimizing, and thresholding. The greedy control is found to only use 1% more energy than the globally optimal dynamic programming solution; but a model of energy loss is required.
Both model predictive control (MPC) and deep reinforcement learning control (DRL) have been presented as a way to approximate the true optimality of a dynamic programming problem, and these two have shown significant operational cost saving potentials for building energy systems. Furthermore, there is still a lack of in-depth quantitative studies on their approximation levels to the true optimality, especially in the building energy domain. To fill in the gap, this paper provides a numerical framework that enables the evaluation of the optimality levels of different controllers for building energy systems. This framework is then used to comprehensively compare the optimal control performance of both MPC and DRL controllers with given computation budgets for a single zone fan coil unit system. Note the optimality is estimated based on a user-specific selection of trade-off weights among energy costs, thermal comfort and control slew rates. Compared with the best optimality we can find through expensive optimization simulations, the best DRL agent can maximally approximate the optimality by 96.54%, which outperforms the best MPC whose optimality level is 90.11%. However, due to the stochasticity, the DRL agent is only expected to approximate the optimality by 90.42%, which is almost equivalent to the best MPC. Except for Proximal Policy Optimization (PPO), all DRL agents can have a better approximation to the optimality than the best MPC, and are expected to have better approximation than the MPC with a prediction horizon of 32 steps (15 min per step). In terms of reducing energy cost and thermal discomfort, MPC can outperform the rule-based control (RBC) by 18.47%–25.44%. DRL can be expected to outperform RBC by 18.95%–25.65% ,and the best DRL control policy can outperform RBC by 20.29%–29.72%. Although the comparison of the optimality level is performed in a perfect setting, e.g., MPC assumes perfect models, and DRL assumes a perfect offline training process and online deployment process, this can shed insight on their capabilities of approximating to the original dynamic programming problem.
The increased frequency of power outages due to natural disasters in recent years has highlighted the urgency of enhancing distribution grid resilience. The effective distribution service restoration (DSR) is an important measure for a resilient distribution grid. In this work, the authors demonstrate that DSR can be significantly improved by leveraging the flexibility provided by the inclusion of demand response (DR). The authors propose a framework for this by considering integrated control of household-level flexible appliances to vary the load demand at the distribution-grid level to improve DSR. The overall framework of the proposed system is modelled as a three-step method considering three optimization problems to (i) calculate feasible controllable aggregated load range for each bus, (ii) determine candidate buses to perform DR and their target load demand, and (iii) maintain the load level in each house through home energy management during the DSR, considering uncertainties in load and solar generation sequentially. The optimization problems are formulated as linear programming, mixed-integer linear programming, and multistage stochastic programming (solved using the stochastic dual dynamic programming) models. Finally, case studies performed in the IEEE 123-node test feeder show improvements in resilience in terms of energy restored compared to the restoration process without DR.
Preface The MultiSector Dynamics (MSD) Community of Practice (CoP) hosted an inaugural workshop on October 3-5, 2023 at the University of California, Davis, to bring together members of the MSD community of practice to advance understanding of the co-evolution of human and natural systems, and to build the next generation of tools that bridge sectors, scales, and systems to realize a more resilient and equitable future. The theme of the workshop was "Advancing Complex Adaptive Human-Earth Systems Science in a World of Interconnected Risks". This document outlines the motivation for the workshop, its goals and objectives, the application process, the agenda, overviews of the training sessions offered to the workshop participants and a summary of each breakout session. The MSD workshop report further discusses the feedback from workshop participants and presents some reflections and next steps. The MSD Workshop organizers thank the DOE Office of Science, Earth and Environmental System Modeling, MultiSector Dynamics program area for financial support of its activities through the Integrated Multisector Multiscale Modeling (IM3) project. For more information related to the broader DOE MultiSector Dynamics Program please see https://climatemodeling.science.energy.gov/program-area/multisector-dynamics. D.L.M. and C.M.B. acknowledge support from the Laboratory Directed Research and Development Program of Oak Ridge National Laboratory (ORNL), managed by UT-Battelle, LLC, for the US Department of Energy (DOE). Disclaimer This report was prepared as an account of work sponsored by an agency of the United States Government. Neither theUnited States Government nor any agency thereof, nor Battelle Memorial Institute, nor any of their employees, makes any warranty, express or implied, or assumes any legal liability or responsibility for the accuracy, complete- ness, or usefulness of any information, apparatus, product, or process disclosed, or represents that its use would not infringe privately owned rights. Reference herein to any specific commercial products, process, or service by trade name,trademark, manufacturer, or otherwise does not necessarily constitute or imply its endorsement, recommendation, or favoring by the United States Government or any agency thereof, or Battelle Memorial Institute. The views and opinions of authors expressed herein do not necessarily state or reflect those of the United States Government or any agency thereof. Pacific Northwest National Laboratory operated by Battelle for the United States Department of Energy Available from:Office of Scientific and Technical Information http://www.OSTI.gov multisectordynamics.org This work is made available under the terms of the Creative Commons Attribution- NonCommercial 4.0 International (CC BY-NC 4.0) https://creativecommons.org/licenses/by-nc/4 Suggested citation: Monier, E., Reed, P.M., Vernon, C.R., Hadjimichael, A., Brelsford, C.M., Burleyson, C.B., Dyreson, A.R., Fletcher, S.M., Giang, A., Gupta, R.S., Jackson, N.D., Jones, A.D., Lamontagne, J.R., McCollum, D.L., Morris, J.F., Moss, R.H., Peng, W., Saari, R.K., Srikrishnan, V., Szinai, J.K., Yoon, J. (2024) MultiSector Dynamics: 2023 Inaugural Workshop Report. MSD-LIVE Data Repository. doi:10.57931/2371710.
Radiation-induced cellular senescence is a double-edged sword, acting as both a tumor suppression process limiting tumor proliferation, and a crucial process contributing to normal tissue injury. Endothelial cells play a role in normal tissue injury after radiation therapy. Recently, a study observed an accumulation of senescent endothelial cells (ECs) around radiation-induced lung focal lesions following stereotactic radiation injury in mice. However, the effect of radiation on EC senescence remains unclear because it depends on dose and fractionation, and because the senescent phenotype is heterogeneous and dynamic.
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In this report, an adaptive critic design (ACD) approach is proposed to control the phase and voltage of a grid-connected virtual synchronous generator (VSG). The penetration of fast responding inertia-less power converters significantly affect the stability of the power system, especially weak systems such as micro grids. The concept of virtual inertia addresses this concern by virtually emulating the behavior of a synchronous generator. However, the conventional VSG is designed based on two conditions: (i) fixed operating point and (ii) inductive grid connections. The performance of VSGs in low-voltage semi-resistive microgrids is far from optimal. To overcome the aforementioned concerns, a heuristic dynamic programing (HDP) approach is proposed to optimally control grid-connected VSGs. The neural-network-based inherence of the HDP enables the proposed technique to adapt to any impedance angle. The HDP controller includes two subnetworks: (i) the action network that controls the system optimally and (ii) the critic network, which evaluates the effectiveness of the action network. The simulation and experimental results are provided to evaluate the effectiveness of the proposed technique. As shown, the HDP-based approach illustrates a better performance in comparison with the conventional PI-based VSG in various operating conditions.
Being intrinsically nonequilibrium, active materials can potentially perform functions that would be thermodynamically forbidden in passive materials. However, active systems have diverse local attractors that correspond to distinct dynamical states, many of which exhibit chaotic turbulent-like dynamics and thus cannot perform work or useful functions. Designing such a system to choose a specific dynamical state is a formidable challenge. Motivated by recent advances enabling optogenetic control of experimental active materials, we describe an optimal control theory framework that identifies a spatiotemporal sequence of light-generated activity that drives an active nematic system toward a prescribed dynamical steady state. Active nematics are unstable to spontaneous defect proliferation and chaotic streaming dynamics in the absence of control. We demonstrate that optimal control theory can compute activity fields that redirect the dynamics into a variety of alternative dynamical programs and functions. This includes dynamically reconfiguring between states, selecting and stabilizing emergent behaviors that do not correspond to attractors, and are hence unstable in the uncontrolled system. Furthermore, our results provide a roadmap to leverage optical control methods to rationally design structure, dynamics, and function in a wide variety of active materials.
Recent developments in the renewable energy sector have seen an unprecedented growth in residential photovoltaic (PV) installations. However, high PV penetration levels often lead to overvoltage problems in low-voltage (LV) distribution feeders. Smart inverter control such as active power curtailment (APC)-based overvoltage control can be implemented to overcome these challenges. The APC technique utilizes a constant droop-based approach which curtails power rigidly, which can lead to significant energy curtailment in the LV distribution feeders. In this paper, different variations of the APC technique with linear, quadratic, and exponential droops have been analyzed from the point-of-view of energy curtailment for a LV distribution network in North America. Further, a combinatorial approach using various droop-based APC methods in conjunction with adaptive dynamic programming (ADP) as a supplementary control scheme has also been proposed. The proposed approach minimizes energy curtailment in the LV distribution network by adjusting the droop gains. Simulation results depict that ADP in conjunction with exponential droop reduces the energy curtailment to approximately 50% compared to using the standard linear droop.