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At least 55 records · Page 3

Solution characterization of the dynamic conjugative entry exclusion protein TraG

The R100 plasmid and the secretion system it encodes are representative of F-like conjugative type IV secretion systems for the transmission of mobile DNA elements in gram-negative bacteria, serving as a major contributor to the spread of antibiotic resistance in bacterial pathogens. The TraG protein of F-like systems consists of a membrane-bound N-terminal domain and a periplasmic C-terminal domain, denoted TraG*. TraG* is essential in preventing redundant DNA transfer through a process termed entry exclusion. In the donor cell, it interacts with TraN to facilitate mating pair stabilization; however, if a mating pore forms between bacteria with identical plasmids, TraG* interacts with its cognate TraS in the inner membrane of the recipient bacterium to prevent redundant donor–donor conjugation. Structural studies of TraG* from the R100 plasmid have revealed the presence of a dynamic region between the N- and C-terminal domains of TraG. Thermofluor, circular dichroism, collision-induced unfolding–mass spectrometry, and size exclusion chromatography linked to multiangle light scattering and small angle x-ray scattering experiments indicated an N-terminal truncation mutant displayed higher stability and less disordered content relative to full-length TraG*. The 45 N-terminal residues of TraG* are hypothesized to serve as part of a flexible linker between the two independently functioning domains.

59 BASIC BIOLOGICAL SCIENCES↗

The crystal structure of bacteriophage λ RexA provides novel insights into the DNA binding properties of Rex-like phage exclusion proteins

Abstract RexA and RexB function as an exclusion system that prevents bacteriophage T4rII mutants from growing on Escherichia coli λ phage lysogens. Recent data established that RexA is a non-specific DNA binding protein that can act independently of RexB to bias the λ bistable switch toward the lytic state, preventing conversion back to lysogeny. The molecular interactions underlying these activities are unknown, owing in part to a dearth of structural information. Here, we present the 2.05-Å crystal structure of the λ RexA dimer, which reveals a two-domain architecture with unexpected structural homology to the recombination-associated protein RdgC. Modelling suggests that our structure adopts a closed conformation and would require significant domain rearrangements to facilitate DNA binding. Mutagenesis coupled with electromobility shift assays, limited proteolysis, and double electron–electron spin resonance spectroscopy support a DNA-dependent conformational change. In vivo phenotypes of RexA mutants suggest that DNA binding is not a strict requirement for phage exclusion but may directly contribute to modulation of the bistable switch. We further demonstrate that RexA homologs from other temperate phages also dimerize and bind DNA in vitro. Collectively, these findings advance our mechanistic understanding of Rex functions and provide new evolutionary insights into different aspects of phage biology.

Biochemistry & Molecular Biology↗

Exclusive π - electroproduction off the neutron in deuterium in the resonance region

We report new results for the exclusive and quasi-free cross sections off neutrons bound in deuterium y v n(p) →p π - (p) are presented over a wide final state hadron angle range with a kinematic coverage of the invariant mass (W) up to 1.825 GeV and the virtual photon four-momentum transfer squared (Q 2 ) from 0.4 to 1.0 GeV 2 . The exclusive structure functions have been extracted and their Legendre moments were obtained. Final-state-interaction contributions have been kinematically separated from the extracted quasi-free cross sections off bound neutrons solely based on the analysis of the experimental data. These new results will serve as long-awaited input for phenomenological analyses to extract the Q 2 evolution of previously unavailable n → N* electroexcitation amplitudes and to improve state-of-the-art models of neutrino scattering off nuclei by augmenting the already available results from free protons.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

Deep exclusive meson production as a probe to the puzzle of Λ hyperon polarization

In the 1970s, an unexpected transverse Λ polarization in unpolarized proton-beryllium collisions was discovered, which initiated extensive studies on spin phenomena in high-energy physics. Over the past five decades, similar transverse Λ polarization has been observed across various collision systems, including lepton-hadron deep-inelastic scattering, hadron-hadron collisions, and electron-positron collisions. Despite numerous promising theoretical models, the fundamental mechanism underlying this polarization phenomenon remains inconclusive to this day. However, in both longitudinally and transversely polarized lepton-hadron and hadron-hadron collisions, it is found that the Λ hyperon is polarized with respect to the initial parton spin direction. How the Λ hyperon acquires its spin has become one of the most crucial questions to address in order to resolve this puzzle. In this paper, I propose to use an exclusive process that can be measured at the Electron-Ion Collider, the deep exclusive meson production, to explicitly test the mechanism of Λ polarization. The outcomes of this experimental measurement are anticipated to unveil the dominant mechanism by which Λ obtains its spin, eliminating many of the ambiguities that have been encountered in previous studies. Finally, experimental challenges and requirements are discussed. Published by the American Physical Society 2024

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

Search for high-mass exclusive diphoton production with tagged protons in proton-proton collisions at s = 13 TeV

A search is presented for high-mass exclusive diphoton production via photon-photon fusion in proton-proton collisions at s = 13 TeV in events where both protons survive the interaction. The analysis utilizes data corresponding to an integrated luminosity of 103 fb − 1 collected in 2016–2018 with the central CMS detector and the CMS and TOTEM precision proton spectrometer (PPS). Events that have two photons with high transverse momenta ( p T γ > 100 GeV ), back-to-back in azimuth, and with a large diphoton invariant mass ( m γ γ > 350 GeV ) are selected. To remove the dominant inclusive diphoton backgrounds, the kinematic properties of the protons detected in PPS are required to match those of the central diphoton system. Only events having opposite-side forward protons detected with a fractional momentum loss between 0.035 and 0.15 (0.18) for the detectors on the negative (positive) side of CMS are considered. One exclusive diphoton candidate is observed for an expected background of 1.1 events. Limits at 95% confidence level are derived for the four-photon anomalous coupling parameters | ζ 1 | < 0.073 TeV − 4 and | ζ 2 | < 0.15 TeV − 4 , using an effective field theory. Additionally, upper limits are placed on the production of axionlike particles with coupling strength to photons f − 1 that varies from 0.03 TeV − 1 to 1 TeV − 1 over the mass range from 500 to 2000 GeV. © 2024 CERN, for the CMS and TOTEMs Collaboration 2024 CERN

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Photon-odderon interference in exclusive χ c charmonium production at the Electron-Ion Collider

Exclusive C = + 1 scalar, axial-vector, and tensor quarkonium production in high-energy electron-proton scattering requires a C -odd t -channel exchange of a photon or a three-gluon ladder. We derive the expressions for the corresponding amplitudes. The relative phase of the photon vs three-gluon exchange amplitudes is determined by the sign of the light-front matrix element of the eikonal color current operator d a b c J + a J + b J + c at moderate x , and is not affected by small- x QCD evolution. Model calculations predict constructive interference, which is particularly strong for momentum transfer | t | ∼ 1 GeV 2 where the cross section for χ c J production exceeds that for pure photon exchange by up to a factor of 4. Exclusive χ c J electroproduction at the high luminosity Electron-Ion Collider occurs with well measurable rates and measurements of these processes should find evidence for the perturbative odderon exchange. We also compute the total electroproduction cross section as a function of energy and provide first estimates of the number of χ c J events per month at the Electron-Ion Collider design luminosity. Published by the American Physical Society 2024

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Breakdown of collinear factorization in the exclusive photoproduction of a π 0 γ pair with large invariant mass

We study the exclusive photoproduction of a π 0 γ pair with large invariant mass M γ π 2 , which is sensitive to the exchange of either two quarks or two gluons in the t channel. In this paper, we show that the process involving two-gluon exchanges does factorize in the Bjorken limit at the leading twist. This can be explicitly demonstrated by the fact that there exist diagrams, which contribute at the leading twist, for which are , due to the pinching of the contour integration of the plus and minus component of the Glauber gluon momentum. For the same reason, π 0 -nucleon scattering to two photons also suffers from the same issue. On the other hand, we stress that there are no issues with respect to collinear factorization for the quark channels. By considering an analysis of all potential reduced diagrams of leading pinch-singular surfaces, we argue that the quark channel is safe from Glauber pinches, and therefore, a collinear factorization in that case follows through without any problems. This means that processes where gluon exchanges are forbidden, such as the exclusive photoproduction of π ± γ and ρ 0 , ± γ , are unaffected by the factorization breaking effects we point out in this paper. Published by the American Physical Society 2025

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

First Simultaneous Determination of Inclusive and Exclusive | V u b |

The first simultaneous determination of the absolute value of the Cabibbo-Kobayashi-Maskawa matrix element V ub using inclusive and exclusive decays is performed with the full Belle data set at the $Υ$(4S) resonance, corresponding to an integrated luminosity of 711 fb -1 . We analyze collision events in which one B meson is fully reconstructed in hadronic modes. This allows for the reconstruction of the hadronic X u system of the semileptonic b → $πℓe_ℓ$ decay. We separate exclusive B → $πℓ\overline{ν}_ℓ$ decays from other inclusive B → $X_uℓ\overline{ν}_ℓ$ and backgrounds with a two-dimensional fit that utilizes the number of charged pions in the X u system and the four-momentum transfer q 2 between the B and X u systems. Combining our measurement with information from lattice QCD and QCD calculations of the inclusive partial rate as well as external experimental information on the shape of the B → $πℓe_ℓ$ form factor, we determine |$V^{excl}_{ub}$| = (3.78 ± 0.23 ± 0.16 ± 0.14) × 10 -3 and |$V^{incl}_{ub}$| = (3.88 ± 0.20 ± 0.31 ± 0.09) x 10 -3 , respectively, with the uncertainties being the statistical error, systematic errors, and theory errors. The ratio of |$V^{excl}_{ub}$|/|$V^{incl}_{ub}$| 0.97 ± 0.12 is compatible with unity.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Study of central exclusive $\pi^+\pi^-$ production in proton-proton collisions at $\sqrt{s} =$ 5.02 and 13 TeV

Central exclusive and semiexclusive production of pairs is measured with the CMS detector in proton-proton collisions at the LHC at center-of-mass energies of 5.02 and 13TeV. The theoretical description of these nonperturbative processes, which have not yet been measured in detail at the LHC, poses a significant challenge to models. The two pions are measured and identified in the CMS silicon tracker based on specific energy loss, whereas the absence of other particles is ensured by calorimeter information. The total and differential cross sections of exclusive and semiexclusive central production are measured as functions of invariant mass, transverse momentum, and rapidity of the system in the fiducial region defined as transverse momentum and pseudorapidity . The production cross sections for the four resonant channels [inline-graphic not available: see fulltext], , [inline-graphic not available: see fulltext], and [inline-graphic not available: see fulltext]are extracted using a simple model. These results represent the first measurement of this process at the LHC collision energies of 5.02 and 13TeV.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

EpIC: novel Monte Carlo generator for exclusive processes

Abstract We present the EpIC Monte Carlo event generator for exclusive processes based on generalised parton distributions. EpIC utilises the PARTONS framework, which provides a flexible software architecture and a variety of modelling options for the partonic description of the nucleon. The generator offers a comprehensive set of features, including simulation of a variety of exclusive processes and radiative corrections. It may be used both in the analysis of experimental data, as well as for impact studies, especially for the future electron-ion colliders.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

Spin density matrix elements in exclusive $\rho ^0$ meson muoproduction

We report on a measurement of Spin Density Matrix Elements (SDMEs) in hard exclusive $\rho ^0$ meson muoproduction at COMPASS using 160 GeV/c polarised μ + and μ – beams impinging on a liquid hydrogen target. The measurement covers the kinematic range 5.0 GeV/c 2 < W < 17.0 GeV/c 2 , 1.0 (GeV/c) 2 < $\mathrm{Q}$ 2 < 10.0 (GeV/c) 2 and 0.01 (GeV/c) 2 < $p_{\textrm{T}}^2$ < 0.5 (GeV/c) 2 . Here, W denotes the mass of the final hadronic system, $\mathrm{Q}$ 2 the virtuality of the exchanged photon, and $p_{\textrm{T}}$ the transverse momentum of the $\rho ^0$ meson with respect to the virtual-photon direction. The measured non-zero SDMEs for the transitions of transversely polarised virtual photons to longitudinally polarised vector mesons ($\gamma ^*_T \rightarrow V^{ }_L$) indicate a violation of s-channel helicity conservation. Additionally, we observe a dominant contribution of natural-parity-exchange transitions and a very small contribution of unnatural-parity-exchange transitions, which is compatible with zero within experimental uncertainties. The results provide important input for modelling Generalised Parton Distributions (GPDs). In particular, they may allow one to evaluate in a model-dependent way the role of parton helicity-flip GPDs in exclusive $\rho ^0$ production.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Measurement of exclusive pion pair production in proton–proton collisions at $\sqrt{s}={7}\,\text {TeV}$ with the ATLAS detector

The exclusive production of pion pairs in the process $pp$ → $pp π$ + $π$ - has been measured at $\sqrt{s}={7}\,\text {TeV}$ with the ATLAS detector at the LHC, using $80 µb$ -1 of low-luminosity data. The pion pairs were detected in the ATLAS central detector while outgoing protons were measured in the forward ATLAS ALFA detector system. This rep resents the first use of proton tagging to measure an exclusive hadronic final state at the LHC. A cross-section measurement is performed in two kinematic regions defined by the pro ton momenta, the pion rapidities and transverse momenta, and the pion–pion invariant mass. Cross-section values of $4.8 ± 1.0$ ${(stat)}^{+0.3}_{-0.2}$ $(syst) µ b$ and $9 ± 6$ ${(stat)}^{+2}_{-2}$ $(syst) µ b$ are obtained in the two regions; they are compared with theoretical models and provide a demonstration of the feasibility of measurements of this type.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

VAIM-CFF: a variational autoencoder inverse mapper solution to Compton form factor extraction from deeply virtual exclusive reactions

We develop a new methodology for extracting Compton form factors (CFFs) from deeply virtual exclusive reactions such as the unpolarized DVCS cross section using a specialized inverse problem solver, a variational autoencoder inverse mapper (VAIM). The VAIM-CFF framework not only allows us access to a fitted solution set possibly containing multiple solutions in the extraction of all 8 CFFs from a single cross section measurement, but also accesses the lost information contained in the forward mapping from CFFs to cross section. We investigate various assumptions and their effects on the predicted CFFs such as cross section organization, number of extracted CFFs, use of uncertainty quantification technique, and inclusion of prior physics information. We then use dimensionality reduction techniques such as principal component analysis to visualize the missing physics information tracked in the latent space of the VAIM framework. Through re-framing the extraction of CFFs as an inverse problem, we gain access to fundamental properties of the problem not comprehensible in standard fitting methodologies: exploring the limits of the information encoded in deeply virtual exclusive experiments.

Accelerator Physics↗

Hard exclusive $\pi^{+}n$ electro production beam spin asymmetries off the proton in the GPD and TDA regimes

Hard exclusive \pi^{+} π + n electro-production can be used to gain access to the 3D nucleon structure. The QCD factorisation mechanism in the “nearly forward region” ( t/Q^{2} t / Q 2 small) allows a description by Generalized Parton Distributions (GPDs), while for the “nearly backward” kinematic region ( u/Q^{2} u / Q 2 small) a description based on nucleon to pion transitions (TDAs) is available. The paper presents a measurement of single beam spin asymmetries to extract the A^{\sin\phi}_{LU} A L U sin ϕ moments and the related cross section ratio \sigma_{LT^\prime}/\sigma_{0} σ L T ′ / σ 0 from the hard exclusive \pi^{+} π + channel off the unpolarized hydrogen target in a wide range of kinematics based on data taken with the CLAS spectrometer at Jefferson Lab. In addition, under forward angles a detailed multidimensional study will be presented based on CLAS12 data and compared to theoretical predictions.

Diehl, Stefan↗

Inclusive and exclusive electron scattering data analysis from Jefferson Lab experiment E12-14-012

Since the first observations of neutrino oscillation, neutrino experiments have come a long way toward precise measurements of the neutrino oscillation parameters, but some obstacles still remain. The next generation of oscillation experiments, including the Deep Underground Neutrino Experiment (DUNE), will be using the Liquid Argon Time Projection Chambers (LArTPCs) with natural argon as the neutrino target material. A precise model of the neutrino cross section on argon does not exist, which is a source of significant uncertainty in such experiments. The E12-14-012 experiment at Jefferson Lab seeks to help remedy this via electron scattering measurements on argon and titanium targets. The experiment collected both inclusive (e,e') and exclusive (e,e'p) data at a wide range of kinematics with the intent to measure the electron-nucleus cross section and thus derive a spectral function for argon that can be used with neutrino experiments. The use of titanium in this experiment stems from the equivalent shell structure that its protons share with the neutrons in argon, which will be crucial in oscillation experiments but cannot be measured directly in electron scattering. This thesis collects several papers which present results from the E12-14-012 experiment. These results include the inclusive (e,e') cross sections for carbon, titanium, argon, and aluminum at a beam energy of 2.22 GeV and a scattering angle of 15.54 deg with uncertainty of less than 5%. Also included are the first results of the exclusive (e,e'p) cross section on argon and titanium.

Murphy, Matthew D.↗

Cost of Fish Exclusion Technologies for Hydropower

This dataset compiles data on the costs of environmental mitigations related to fish exclusion for 35 hydropower projects based on documents obtained from the U.S Federal Energy Regulatory Commission (FERC). Data for all measures and their associated project-specific information, including installed and hydraulic capacities, were manually extracted from environmental impact statements and/or environmental assessment (EIS/EA) documents. All data were consolidated in a comma-separated (.csv) file, referred to as the Cost of Fish Exclusion Technologies for Hydropower Database.

13 HYDRO ENERGY↗

Exclusive $|V_{ub}|$ determinations using Padé Approximants

We determine the CKM parameter |V ub | from the exclusive semileptonic decays B→πℓν ℓ and B s →Kℓν ℓ , employing Lattice QCD theoretical information on the form factors in combination with experimental measurements of the differential branching ratio distributions. Using Pad\'{e} approximants to the participating form factors we obtain |V ub |=3.86(11)x10 -3 and |V ub |=3.58(9)x10 -3 from the analyses of the individual decay channels, respectively, and |V ub |=3.68(5)x10 -3 from a simultaneous analysis of both decays. Our results highlight the importance of the decay B s →Kμν μ in complementing the traditional B→πℓν ℓ one in the exclusive determination of |V ub | , and strengthens the case for precise measurements of the differential B s →Kℓν ℓ decay rate with a finer resolution of the q 2 bins, as it would definitely allow achieving more conclusive results for |V ub | .

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

Unexpected Breakdown of Collinear Factorisation at Leading Twist in Exclusive π 0 γ Photoproduction Due to Glauber Pinch

We demonstrate the breakdown of collinear factorisation for the exclusive photoproduction at leading twist of a pair, sensitive to both quark and gluon GPD channels. For the very first time in the case of an exclusive process, we demonstrate the breakdown of collinear factorisation through soft-to-collinear Glauber exchanges. We show that the amplitude fails to factorise due to the presence of a Glauber pinch, which has the same power counting as the standard collinear pinch. The Glauber pinch that occurs here is peculiar, since the mechanism that produces it involves two-loop integrals. This is corroborated by an explicit calculation of the gluon GPD channel to pair photoproduction, which leads to a divergent amplitude already at leading twist-2 and at leading order in . On the other hand, for processes where the gluon GPD channel is forbidden, for example when the outgoing meson is a charged pion or a rho meson, collinear factorisation works without any issues.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗