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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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NASA NTRSDate not supplied

Open Science for Life in Space: Data Sharing and Tools for Knowledge Discovery

Molecular-omics, physiological-phenotypic-behavioral, and environmental-radiation telemetry data from spaceflight biological and health studies are increasingly being made findable, accessible, interoperable, and reusable for the scientific public. These data, as well as space science-relevant biospecimens, are available through NASA’s Open Science Data Repository (OSDR), which is the new umbrella grouping of NASA GeneLab, the Ames Life Sciences Data Archive (ALSDA), and the NASA Biological Institutional Scientific Collection (NBISC). The quality of data is underpinned by datasets having rich metadata (determined through Analysis Working Group members), processing pipelines to enable data reuse standards, and ontologies specifying terminology semantics (e.g., the Radiation Biology Ontology).

space biology↗
NASA NTRS2022

Data Needs to be…

Findable, Accessible, Interoperable, and Reusable (FAIR) data are essential to heliophysics, indeed all scientific research. We make recommendations intended to prioritize resources needed to satisfy FAIR data principles, treating them as a fundamental research infrastructure, rather than a simple research product.

A Halford↗
NASA NTRSDate not supplied

The Use of Atmospheric Composition Variable Standard Names in Airborne and Field Data Products

The number of variables measured during airborne field campaigns has increased more than tenfold over the last thirty years. With this increase in measurements, the complexity for distributed active archive centers (DAACs) to distribute the data and for data users to search for and find measurements of interest has also increased. Part of this complexity arises from the unique variable names in suborbital atmospheric composition field studies. With limited guidelines related to variable naming, variable names and structures can vary significantly, even for the same type of variable. It is common for instrument scientists to use their intended measurable quantity as the data variable name. This can make it difficult for users to locate and interact with a particular variable across multiple data sets. One effective solution to this problem, identified by the Earth Science Data System (ESDS) ICARTT Refresh Working Group [1], was to introduce variable standard names that can be used as tags for each data variable. This allows similar measurements (e.g., dew point) to be categorized and located across field campaigns, regardless of what variable name the instrument scientist has used. From this the atmospheric composition variable standard names were developed with the goal to use Findable, Accessible, Interoperable, and Reusable (FAIR) principles [2] and provide context for all users, while remaining connected to those in the subject area. These standard names have been successfully implemented in FIREX-AQ, CAMP 2EX, ACTIVATE, and DCOTSS field campaigns.

metadata↗
NASA NTRSDate not supplied

Big-data Efficient and Automated Science Transfer (BEAST): An Open-Source Software Architecture for Arc Jet Data Management, Modeling, and Automation

Big-data Efficient and Automated Science Transfer (BEAST) is a facility data management application developed for the NASA Ames arc jet facilities. The current decentralized data management practices limit statistical tracking, synchronization between video/time series, search capability, data throughput, and data processing speed/efficiency. Consequently, BEAST was developed to provide a new data infrastructure with streamlined data collection, processing, transfer, and analysis. This new framework also seeks to implement the FAIR principles of data stewardship: Findable, Accessible, Interoperable, and Reusable. The BEAST framework is based on a combination of the Python Django web framework and the Python data stack to provide a monolithic, open-source platform for data management, automation, and machine learning. This architecture was chosen for maintainability and scalability for a small, in-house development team. This paper will describe the application framework, deployment, and discuss the benefits and future plans for the system.

Data management↗
NASA NTRSDate not supplied

Big-data Efficient Automated Science Transfer (BEAST): an open-source software architecture for arc jet data management, modeling, and automation

Big-data Efficient and Automated Science Transfer (BEAST) was conceived to address the existing ground testing data management of the NASA Ames arc jet facilities (e.g., manually entered Excel files and USB drive data transfers). These data management practices were seen as a choke point for future thermal protection system (TPS) development as they limit statistical tracking, resolution of diagnostics, coordination between video/time series, data throughput, and data processing speed/efficiency. Consequently, BEAST was developed to provide a new data infrastructure with streamlined data collection, processing, transfer, and analysis. This new framework also seeks to implement the FAIR principles of data stewardship: Findable, Accessible, Interoperable, and Reusable. The BEAST framework is based on a combination of the Python Django web framework and the Python data stack to provide a monolithic, open-source platform for data management, automation, and machine learning. This architecture was chosen for maintainability and scalability for a small, in-house development team. This paper will describe the application framework, deployment, and discuss the benefits and future plans for the system.

Data management↗
NASA NTRSDate not supplied

Enabling Space Biological Knowledge Discovery Through Image and Video Data Sharing

Increased biomedical risks associated with deep space crewed missions (cis-Lunar, Mars transit/surface) require development of health countermeasures, novel ecosystem support, risk modeling, and fundamental space biological knowledge discovery. Molecular-omics, physiological-phenotypic-behavioral, and environmental-radiation telemetry data from space biological and health studies are needed for reuse by scientists to address these tasks. The data as well as space-relevant biospecimens are being made more findable, accessible, interoperable, and reusable through NASA’s Open Science Data Repository (OSDR). This new OSDR umbrella grouping includes NASA GeneLab, the NASA Ames Life Sciences Data Archive (ALSDA), and the NASA Biological Institutional Scientific Collection. The OSDR system design appropriately handles metadata and processed-tabular results from ALSDA studies collected from space experiments. But raw and processed ALSDA bioimage and video datasets require an expansion of OSDR’s data architecture to handle ingestion, curation, and egress. The academic-industry bioimaging field saw a scientific renaissance in the past several years through leveraging open-source software, international collaborations, machine learning, and other open science/programming approaches. As crewed missions and more biological experiments are on the deep space horizon, OSDR is embracing data stewardship through listening to feedback from subject matter experts and designing an expanded architecture which is appropriate for NASA’s goals to enable analysis and reuse of bioimaging and video data for the public science community.Discovery Through Image and Video Data Sharing

space biology↗
NASA NTRSDate not supplied

Data Sharing in Radiobiology; Towards FAIR

The value of scientific data depends on their findability, accessibility, integrability and reusability according to the FAIR principles. Together with the sustainability of data preservation and access, these principles underpin the long term benefits of scientific research. Within the domain of radiobiology we have a huge array of data types, themes and complexities which make standardisation of metadata, data structure and data integration very challenging. Moreover, it is clear that, for example, in the area of disaster preparedness, the ready discovery and availability of multiple types of data, for example on biological effects of exposure, climatology, ecology, human behavioural and attitudinal studies, is important for an integrated scientific approach. Because these data are spread over many databases, journal supplementary information resources and even the computers of the investigators, their discovery and reuse can be challenging. Despite exhortations from funding agencies and scientific institutions over the past two decades there is still a serious deficit in the willingness and in some cases the ability of investigators to share data, and although much may not be formally „Public domain“, information about the existence of the data, their metadata, and how to obtain them should always be available. We report the progress of work on three databases, the STORE and the NASA GeneLab and LSDA repositories to leverage the Radiation Biology Ontology (RBO), a structured terminology for metadata that can be used by all radiation biology-relevant databases to unite federated and automated data searches across multiple databases, for example using web services, and through semantic web technologies supporting data discovery. The initial primary use-cases for RBO were archiving data in the STORE database (https://www.storedb.org/), the repository used for the RadoNorm and Pianoforte Projects among others, and in the NASA Open Science Data Repository (https://osdr.nasa.gov/bio). The scope of radiobiology research ranges from basic physics to radiation oncology to sociolegal studies; no existing ontology had the necessary breadth or depth to fulfill this need. In addition, a formal ontology has the advantage of being usable for machine learning and, importantly, for tasks like data integration, knowledge extraction from the scientific literature and for query extension and data classification. Standardisation of metadata is one of the primary objectives of the FAIR principles for open data; RBO is an important landmark for FAIR-compliant radiation biology data sharing. The RBO is developed using the open-source tools of GitHub and the OBO Foundry-led Ontology Development Kit, and published through GitHub and the NIH/NCBI BioPortal website. This initial phase of concept modeling has yielded an ontology that has more than 300 declared concepts, with more than 3500 additional concepts imported from other OBO Foundry ontologies with relevance to radiation biology (for example, concepts from the ISO standard Basic Formal Ontology, the Environment Ontology and the Gene Ontology). We welcome input into the development of RBO and encourage its adoption.

ontologies↗
NASA NTRSDate not supplied

Automated Collection of Scientific Publications Linked to NASA Earth Science Datasets

NASA's Earth Observing System Data and Information System (EOSDIS) began dataset Digital Object Identifier (DOI) registration in 2012. The number of dataset DOIs registered as of January of 2023 exceeds 11,000. As the research community becomes aware of the importance of sharing data through Open Science and optimizing data reuse through Findability, Accessibility, Interoperability, and Reuse (FAIR) data management principles, datasets are increasingly being cited in scientific publications. When datasets are cited explicitly by DOI within published works, automated methods can be developed for collecting these published works from a variety of bibliometric sources. The coverage of the sources varies, so each source can collect citations that are only available within it. Using major citation databases such as Scopus and Web of Science, the Google Scholar search engine, the CrossRef Open Citation Index, and the dataset DOI registry DataCite, we present an automated workflow for dataset citation collection. By harvesting citations automatically, a citation library is created explicitly linking EOSDIS datasets to publications that cite them. Using Zotero, a free and open-source citation manager, we demonstrate how to access and browse this library by the tags indicating bibliometric sources, dataset DOI, and the dataset archive center. We also demonstrate temporary trends in the number of publications harvested from bibliometric sources.

Infometrics↗
NASA NTRSDate not supplied

Laying the Foundations for FAIR-er Science: ISA and the LSDA Data Submission Process in NASA's Evolving Data Management Environment

The Life Sciences Data Archive (LSDA) archives data resulting from research on the effects of spaceflight on humans and the development of countermeasures to mitigate spaceflight hazards. Archivists work with researchers to ensure that unique and high value data products and their metadata are preserved and managed to support current and future research. Currently, LSDA is updating its procedures and data submission requirements in response to the evolving data preservation environment at NASA. LSDA is implementing best practices for research data management through the establishment of clear data submission guidelines, integration of the FAIR (Findability, Accessibility, Interoperability, Reusability) principles, and use of the ISA (Investigation, Study, Assay) research metadata framework for data discoverability and transparency into the data management processes. These changes directly impact LSDA’s requirements for research data submissions. The newly revised Research Data Submission Agreement (RDSA), formerly the Data Submission Agreement (DSA), introduces ISA-compatible metadata collection standards to LSDA’s process. Adherence to LSDA’s data submission guidelines enhances the FAIR-ness of the repository’s collections for future users. This presentation will discuss (1) how submission of research data and associated metadata are impacted by current data management policies, (2) benefits of the adoption of FAIR principles and the ISA metadata framework for retrospective studies utilizing existing LSDA datasets and historic data collections, and (3) the support LSDA will provide to researchers during this transition.

LSDA↗
NASA NTRS2021

The Deep-Time Digital Earth program: data-driven discovery in geosciences

Current barriers hindering data-driven discoveries in deep-time Earth (DE) include: substantial volumes of DE data are not digitized; many DE databases do not adhere to FAIR (findable, accessible, interoperable and reusable) principles; we lack a systematic knowledge graph for DE; existing DE databases are geographically heterogeneous; a significant fraction of DE data is not in open-access formats; tailored tools are needed. These challenges motivate the Deep-Time Digital Earth (DDE) program initiated by the International Union of Geological Sciences and developed in cooperation with national geological surveys, professional associations, academic institutions and scientists around the world. DDE’s mission is to build on previous research to develop a systematic DE knowledge graph, a FAIR data infrastructure that links existing databases and makes dark data visible, and tailored tools for DE data, which are universally accessible. DDE aims to harmonize DE data, share global geoscience knowledge and facilitate data-driven discovery in the understanding of Earth’s evolution.

Chengshan Wang↗
NASA NTRSDate not supplied

Open Science for Plants in Space: Data Sharing, Standards, and Informatics for Reuse and Knowledge Discovery

Upcoming deep space missions rely on plants and crops for crew and ecosystem health. Access to space plant data enables scientists to gain a deeper understanding of biological responses to ionizing radiation, altered gravity, low atmospheric pressure, elevated CO2, and altered photoperiods. Open Science is the practice of making research available to all, while respecting diverse cultures, fostering collaborations with equity. 2023 is the ‘Year of Open Science’, and NASA has a 5-year Transform to Open Science (TOPS) mission designed to rapidly transform the agency toward an inclusive culture of open science. NASA’s Open Science Data Repository (OSDR) developed by NASA’s Biological and Physical Sciences Division provides access to data from space-relevant biological experiments. OSDR combines two databases, GeneLab and Ames Life Sciences Data Archive (ALSDA) to maximize access to standardized ‘omics (e.g., transcriptomics, proteomics) and phenotypic data (e.g., microscopy, biomass), respectively. OSDR started in 2014 with the creation of the first space-relevant FAIR (Findable, Accessible, Interoperable, Reusable) biological ‘omics repository (GeneLab), providing detailed metadata on investigation, sample, and assay levels. Today, GeneLab hosts 62 plant datasets which have led to 5 published peer-reviewed meta-analysis publications. Most of these publications were collaboration efforts under the OSDR Analysis Working Groups (AWGs). AWGs provide great opportunities for investigators to collaborate and set new standards for space-relevant data and metadata. The AWGs are welcoming any ASPB members interested in providing plant expertise for space biology. The addition of ALSDA to OSDR is also expanding analysis capability beyond ‘omics. Now is the time to get involved as a Subject Matter Expert as we establish the framework for modern plant data archiving through the AWGs. Investigators are invited to submit their space-relevant plant datasets to OSDR and visit the site to learn about the tools OSDR has to offer (osdr.nasa.gov/bio).

FAIR↗
NASA NTRSDate not supplied

Preserving NASA Historic and Current Mission Data and Adding Value to These for Future Researchers

The NASA Goddard Earth Sciences Data and Information Services Center (GES DISC) has been actively involved in many aspects of ensuring the long-term preservation of NASA earth science data and knowledge. This involves both the recovery and preservation of early NASA meteorological and other earth observation data, as well as preserving the more recent Earth Observation System (EOS) mission data sets which continue or have reached their end of lifetime. The GES DISC adds value to these preserved data by adding metadata and making the data available online to future researchers. The early NASA meteorological and earth observation data sets from the 1960s and 70s were originally archived on magnetic tapes, and visualizations of these data were preserved on 70-mm film. As these media have aged, their contents have been at risk of permanent loss. NASA has given the task of preserving these early data sets to the GES DISC and making these data sets easily available to the public. The data from these early missions are potentially useful to climate researchers as these are some of the only global measurements made at their time. These old data on magnetic tapes and film strips do not contain easily readable metadata, and so to add value the GES DISC has added digital metadata to them so that the data are searchable and findable. The GES DISC is also involved in preserving the data and knowledge from the EOS era missions. The GES DISC follows the guidelines developed for the preservation of data as specified in the NASA EOS Data and Information System (EOSDIS) Earth Science Data Preservation Content Specification (423-SPEC-001) document. To date, the GES DISC has consulted with the data science teams from the following missions: UARS, Earth Probe TOMS, Aura HIRDLS, and SORCE, in order to properly preserve their data and accompanying documentation. The GES DISC is also currently working with the EOS science teams from TRMM, AIRS, MLS, OMI and additional missions to ensure that the relevant documents and data sets are properly archived for future researchers. A standardized procedure for mission data preservation following 423-SPEC-001 makes preservation among the many NASA EOSDIS data centers uniform, so that these could be transitioned easily to a common EOSDIS preservation repository. This presentation will give an overview of the preservation and recovery of the old NASA historical data sets archived at the GES DISC, as well as the data and documentation preservation efforts of the EOS era missions.

James Johnson↗
NASA NTRSDate not supplied

Database Design Strategies for Coordinated Simulation and Testing in Additive Manufacturing

The qualification and certification (Q&C) process presents a significant challenge for widespread adoption of additive manufacturing (AM) materials and processes for aerospace applications. A relational database framework will be presented as a tool for data curation of coordinated experimental and computational materials modeling research activities. A comparison of relational and hierarchical data structures in this domain will be emphasized through the evolution of a database design strategy. This framework’s mission is to support the advancement of computational materials-informed Q&C by providing the necessary data infrastructure to trace reliability and reproducibility measures through unified AM materials simulation and experimental testing. FAIR (findable, accessible, interoperable, and reusable) data will be highlighted as a necessary precursor for automation of specific actions, which ultimately reduces the time and expense burden for Q&C. The discussion will be mostly limited to back-end design elements, though a few front-end user experience examples will also be shared.

Qualification↗
NASA NTRS2023

Data Sharing in Radiation Biology: Towards FAIR

The value of scientific data depends on their findability, accessibility, integrability and reusability according to the FAIR principles. Together with the sustainability of data preservation and access, these principles underpin the long term benefits of scientific research. Within the domain of radiobiology we have a huge array of data types, themes and complexities which make standardisation of metadata, data structure and data integration very challenging. Moreover, it is clear that, for example, in the area of disaster preparedness, the ready discovery and availability of multiple types of data, for example on biological effects of exposure, climatology, ecology, human behavioural and attitudinal studies, is important for an integrated scientific approach. Because these data are spread over many databases, journal supplementary information resources and even the computers of the investigators, their discovery and reuse can be challenging. Despite exhortations from funding agencies and scientific institutions over the past two decades there is still a serious deficit in the willingness and in some cases the ability of investigators to share data, and although much may not be formally "Public domain“, information about the existence of the data, their metadata, and how to obtain them should always be available. We report the progress of work on three databases, the STORE and the NASA GeneLab and LSDA repositories to leverage the Radiation Biology Ontology (RBO), a structured terminology for metadata that can be used by all radiation biology-relevant databases to unite federated and automated data searches across multiple databases, for example using web services, and through semantic web technologies supporting data discovery. The initial primary use-cases for RBO were archiving data in the STORE database (https://www.storedb.org/), the repository used for the RadoNorm and Pianoforte Projects among others, and in the NASA Open Science Data Repository (https://osdr.nasa.gov/bio). The scope of radiobiology research ranges from basic physics to radiation oncology to sociolegal studies; no existing ontology had the necessary breadth or depth to fulfill this need. In addition, a formal ontology has the advantage of being usable for machine learning and, importantly, for tasks like data integration, knowledge extraction from the scientific literature and for query extension and data classification. Standardisation of metadata is one of the primary objectives of the FAIR principles for open data; RBO is an important landmark for FAIR-compliant radiation biology data sharing. The RBO is developed using the open-source tools of GitHub and the OBO Foundry-led Ontology Development Kit, and published through GitHub and the NIH/NCBI BioPortal website. This initial phase of concept modeling has yielded an ontology that has more than 300 declared concepts, with more than 3500 additional concepts imported from other OBO Foundry ontologies with relevance to radiation biology (for example, concepts from the ISO standard Basic Formal Ontology, the Environment Ontology and the Gene Ontology). We welcome input into the development of RBO and encourage its adoption.

ontologies↗
NASA NTRSDate not supplied

Open Science for Plants in Space: Data Sharing, Standards, and Informatics for Reuse and Knowledge Discovery

Upcoming deep space missions will rely on plants for crew and ecosystem health. Open access space biology data enables scientists to examine the biological responses of plants to ionizing radiation, altered gravity, low atmospheric pressure, elevated CO2, altered photoperiods and many other abiotic stressors. Open Science is the practice of making research available to all, while respecting diverse cultures, and fostering collaborations with equity. 2023 is the ‘Year of Open Science’, and NASA has a 5-year Transform to Open Science (TOPS) initiative designed to rapidly transform the agency toward an inclusive culture of open science. NASA’s Open Science Data Repository (OSDR) within NASA’s Biological and Physical Sciences Division provides access to data from space-relevant biological experiments. OSDR combines two databases, GeneLab and Ames Life Sciences Data Archive (ALSDA) to maximize access to standardized ‘omics (e.g., transcriptomics, proteomics) and phenotypic data (e.g., microscopy, biomass), respectively. GeneLab started in 2014 with the creation of the first space-relevant FAIR (Findable, Accessible, Interoperable, Reusable) biological ‘omics repository, providing detailed metadata on investigation, sample, and assay levels. The addition of ALSDA to OSDR expands plant data analysis capabilities across both phenotypic and ‘omics data. Today, OSDR hosts 62+ plant datasets and has enabled 58 peer-reviewed publications. Most of these publications were collaboration efforts under the OSDR Analysis Working Groups (AWGs). AWGs provide great opportunities for investigators to collaborate and set new standards for space-relevant data and metadata. The AWGs welcome any ASPB members interested in contributing plant expertise for space biology, and to serve as subject matter experts as we establish the framework for modern plant data archiving. Investigators are invited to submit their space-relevant plant datasets to OSDR and visit the site to learn about the tools OSDR has to offer (osdr.nasa.gov/bio).

FAIR↗
NASA NTRSDate not supplied

RadLab and the Environmental Data Application Dashboard: Graphical and Programming Interfaces for Interrogation of Space Telemetry Data

Sensors on the International Space Station (ISS) and multiple spacecraft elsewhere in Earth orbit and in deep space continuously monitor and collect environmental data, transmitting this information back to Earth. These data include ionizing radiation and, on the ISS, CO2, relative humidity levels, and temperature, and are of great importance to space biology research. Ionizing radiation in particular has been established in ground-based experiments as being correlated with increased risk of carcinogenesis and cardiovascular and neurological effects. Looking ahead to future long duration crewed missions beyond low Earth orbit, the ability to study how factors including CO2 levels, light cycle, temperature modulate the response to ionizing radiation and microgravity is essential. To date, access to these data has been fragmented across space agencies, spacecraft, and databases. To address this issue, NASA’s Open Science Data Repository (osdr.nasa.gov) has developed two Web applications: the Environmental Data Application (EDA) and a radiation-specific RadLab. Each consists of an API (application programming interface) and an associated GUI (graphical user interface) that provide single points of access to the data. To date, OSDR has focused on the sensors from payloads and radiation detectors located on the ISS. The Web applications process telemetry information and associated data, such as spacecraft location and orientation, from multiple international databases. The applications’ request syntax enables users to interrogate these data by craft, sensor type, time range, radiation type (galactic cosmic rays, solar particle events, the contribution of the South Atlantic Anomaly), facilitating arbitrary comparisons of original source data at varying time resolutions. The applications provide programmatic access for use in computational pipelines and GUIs for data visualization and exploration, making these data FAIR (Findable, Accessible, Interoperable, and Reusable), complementing the biological data contained in OSDR, and providing the space science community with a valuable resource for scientific analyses.

radiation↗
NASA NTRSDate not supplied

The Evolution of NASA’s Land, Atmosphere Near real-time Capability for Earth Observing Systems (LANCE) to Support an Increasingly Diverse Range of User Needs

NASA’s Land, Atmosphere Near Real-Time Capability for Earth Observing Systems (LANCE) supports a host of near real-time (NRT) monitoring applications from air quality to wildfires to flooding to droughts to severe storms. LANCE distributes 40-75 TB of data per week from 13 instruments to a wide range of users in over 200 countries. Most of the data and imagery served through LANCE are available within three hours of satellite overpass. Leveraging the existing NASA infrastructure and science teams has made LANCE unique in its ability to provide data from instruments onboard Earth observing satellites rapidly, accurately, and consistently. LANCE continually ensures these data are findable, readily accessible, and freely available. The evolution of LANCE is ongoing, as it strives to enable researchers and applications users to quickly incorporate the latest satellite data into their work, leading to more timely and accurate understanding of the Earth’s land and atmosphere.

Jenny Hewson↗
NASA NTRSDate not supplied

The Evolution of NASA's Land, Atmosphere Near Real-Time Capability for EOS (LANCE) to Support an Increasingly Diverse Range of User Needs

NASA’s Land, Atmosphere Near Real-Time Capability for Earth Observing Systems (LANCE) supports a host of near real-time (NRT) monitoring applications from air quality to wildfires to flooding to droughts to severe storms. LANCE distributes 40-75 TB of data per week from 13 instruments to a wide range of users in over 200 countries. Most of the data and imagery served through LANCE are available within three hours of satellite overpass. Leveraging the existing NASA infrastructure and science teams has made LANCE unique in its ability to provide data from instruments onboard Earth observing satellites rapidly, accurately, and consistently. LANCE continually ensures these data are findable, readily accessible, and freely available. The evolution of LANCE is ongoing, as it strives to enable researchers and applications users to quickly incorporate the latest satellite data into their work, leading to more timely and accurate understanding of the Earth’s land and atmosphere.

Jenny Hewson↗