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At least 55 records · Page 3

Multi-Sensor Characterization of the Boreal Forest: Initial Findings

Results are presented in an initial apriori knowledge approach toward using complementary multi-sensor multi-temporal imagery in characterizing vegetated landscapes over a site in the Boreal Ecosystem-Atmosphere Study (BOREAS). Airborne Visible/Infrared Imaging Spectrometer (AVIRIS) and Airborne Synthetic Aperture Radar (AIRSAR) data were segmented using multiple endmember spectral mixture analysis and binary decision tree approaches. Individual date/sensor land cover maps had overall accuracies between 55.0% - 69.8%. The best eight land cover layers from all dates and sensors correctly characterized 79.3% of the cover types. An overlay approach was used to create a final land cover map. An overall accuracy of 71.3% was achieved in this multi-sensor approach, a 1.5% improvement over our most accurate single scene technique, but 8% less than the original input. Black spruce was evaluated to be particularly undermapped in the final map possibly because it was also contained within jack pine and muskeg land coverages.

Reith, Ernest↗

The importance of mesoscale circulations generated by subgrid-scale landscape heterogeneities in general circulation models

A mesoscale atmospheric model was used to evaluate the impact of subgrid-scale landscape discontinuities on the vertical profiles of resolved temperature, moisture, and moist static energy in the planetary boundary layer (PBL) of general circulation models (GCMs). These profiles were produced with a 3D version of the model (using a horizontal grid resolution of 7.5 km and 13 vertical layers in the PBL) by averaging horizontally the various atmospheric variables over a 180 x 180 sq km domain-about the size of the horizontal domain represented by a single grid element in a GCM. They were compared to corresponding vertical profiles produced with a 1D version of the model, which simulates the PBL, as in a GCM, over a single horizontal grid element. Differences obtained between the horizontally averaged atmospheric variables produced with the 3D simulations and the 1D simulations emphasize the impact of subgrid-scale landscape discontinuities on GCM-resolved variables. Various types of landscape discontinuities, characterized by horizontal contrasts of surface wetness and size of land patches, were simulated under various background-wind conditions. Differences of temperature, specific humidity, and moist static energy as large as 4 K, 6 g/kg, and 10 kJ/kg were obtained in some cases. These differences were not affected significantly by moderate winds but were sensitive to the spatial distribution of surface wetness. These results emphasize the need to parameterize mesoscale processes induced by landscape discontinuities in GCMss.

Lynn, Barry H.↗

Probing energy landscapes in multilayer heterostructures: Challenges and opportunities

Quantitative characterization of energy landscapes at buried interfaces is essential for assessing their functionality. This perspective highlights recent developments in reconstructing internal potential profiles based on hard x-ray photoemission experiments that have proved to be a rich source of information. We show that band-edge profiles can be reconstructed from core-level photoelectron spectra by performing a comprehensive search for the best-fit set of associated layer-resolved spectra. The use of hard x-rays allows heterostructures to be probed over length scales comparable to relevant electronic screening lengths.Significantly,this information takes our understanding of such systems to a new level that is not currently achievable using any other experimental technique.

36 MATERIALS SCIENCE↗

Evaluation of Sentinel-1A Data For Above Ground Biomass Estimation in Different Forests in India

Use of remote sensing data for mapping and monitoring of forest biomass across large spatial scales can aid in addressing uncertainties in carbon cycle. Earlier, several researchers reported on the use of Synthetic Aperture Radar (SAR) data for characterizing forest structural parameters and the above ground biomass estimation. However, these studies cannot be generalized and the algorithms cannot be applied to all types of forests without additional information on the forest physiognomy, stand structure and biomass characteristics. The radar backscatter signal also saturates as forest parameters such as biomass and the tree height increase. It is also not clear how different polarizations (VV versus VH) impact the backscatter retrievals in different forested regions. Thus, it is important to evaluate the potential of SAR data in different landscapes for characterizing forest structural parameters. In this study, the SAR data from Sentinel-1A has been used to characterize forest structural parameters including the above ground biomass from tropical forests of India. Ground based data on tree density, basal area and above ground biomass data from thirty-eight different forested sites has been collected to relate to SAR data. After the pre-processing of Sentinel 1-A data for radiometric calibration, geo-correction, terrain correction and speckle filtering, the variability in the backscatter signal in relation tree density, basal area and above biomass density has been investigated. Results from the curve fitting approach suggested exponential model between the Sentinel-1A backscatter versus tree density and above ground biomass whereas the relationship was almost linear with the basal area in the VV polarization mode. Of the different parameters, tree density could explain most of the variations in backscatter. Both VV and VH backscatter signals could explain only thirty and thirty three percent of variation in above biomass in different forest sites of India. Results also suggested saturation of the Sentinel-1A backscatter signal around hundred tonnes per hectare for VV polarization and one hundred and forty five tonnes per hectare for VH polarization. The presentation will highlight the above results in addition to potentials and limitations of Sentinel-1A data for retrieving forest structural parameters. Also, background information on different forest types of India, biomass variations and forest type mapping efforts in the region will be presented.

Data↗

Multi-faceted epigenetic dysregulation of gene expression promotes esophageal squamous cell carcinoma

Epigenetic landscapes can shape physiologic and disease phenotypes. We used integrative, high resolution multi-omics methods to delineate the methylome landscape and characterize the oncogenic drivers of esophageal squamous cell carcinoma (ESCC). We found 98% of CpGs are hypomethylated across the ESCC genome. Hypo-methylated regions are enriched in areas with heterochromatin binding markers (H3K9me3, H3K27me3), while hyper-methylated regions are enriched in polycomb repressive complex (EZH2/SUZ12) recognizing regions. Altered methylation in promoters, enhancers, and gene bodies, as well as in polycomb repressive complex occupancy and CTCF binding sites are associated with cancer-specific gene dysregulation. Epigenetic-mediated activation of non-canonical WNT/β-catenin/MMP signaling and a YY1/lncRNA ESCCAL-1/ribosomal protein network are uncovered and validated as potential novel ESCC driver alterations. This study advances our understanding of how epigenetic landscapes shape cancer pathogenesis and provides a resource for biomarker and target discovery.

59 BASIC BIOLOGICAL SCIENCES↗

Manipulating the Assembly and Architecture of Fibrillar Silk

Silk is a unique and exceptionally strong biological material. However, no synthetic method has yet come close to replicating the properties of natural silk. This shortfall is attributed to an insufficient understanding of both silk nanofibril structure and the mechanism of formation. Here in situ atomic force microscopy (AFM) and photo-induced force microscopy (PiFM) is utilized to investigate the formation process and define the basic structural paradigm of individual silk nanofibrils. By visualizing the multistage process of silk nanofibril formation, the importance of conformational transformations along the assembly pathway is revealed. Unfolded silk structures initially accumulate into amorphous clusters, which then evolve into crystal nuclei via conformational transformation into β-crystallites. Nanofibril elongation then occurs through the attachment of silk molecules at a single end of the nanofibril tip; this is facilitated through the formation of a new amorphous cluster that then repeats the aforementioned conformational transformation. However, enzymatic digestion of the amorphous regions leads to direct, rapid elongation of β-crystalline fibers. These findings imply that the energy landscape is characterized by shallow minima associated with intermediate states, which can be eliminated by introducing β-crystallites, and motivate research into the directed modification of the silk assembly pathway to select for features beneficial to specific applications.

36 MATERIALS SCIENCE↗

Thiol redox proteomics: Characterization of thiol-based post-translational modifications

Redox post-translational modifications on cysteine thiols (redox PTMs) have profound effects on protein structure and function, thus enabling regulation of various biological processes. Redox proteomics approaches aim to characterize the landscape of redox PTMs at the systems level. These approaches facilitate studies of condition-specific, dynamic processes implicating redox PTMs and have furthered our understanding of redox signaling and regulation. Mass spectrometry (MS) is a powerful tool for such analyses which has been demonstrated by significant advances in redox proteomics during the last decade. A group of well-established approaches involves the initial blocking of free thiols followed by selective reduction of oxidized PTMs and subsequent enrichment for downstream detection. Alternatively, novel chemoselective probe-based approaches have been developed for various redox PTMs. Direct detection of redox PTMs without any enrichment has also been demonstrated given the sensitivity of contemporary MS instruments. This review discusses the general principles behind different analytical strategies and covers recent advances in redox proteomics. Several applications of redox proteomics are also highlighted to illustrate how large-scale redox proteomics data can lead to novel biological insights.

59 BASIC BIOLOGICAL SCIENCES↗

Measuring multiple cosmogenic nuclides in glacial cobbles sheds light on Greenland Ice Sheet processes

The behavior of the Greenland Ice Sheet during the Pleistocene remains uncertain due to the paucity of evidence predating the Last Glacial Maximum. In this study, we employ a novel approach, cosmogenic nuclide analysis of individual subglacially-derived cobbles, which allows us to make inferences about ice sheet processes and subglacial erosion. From three locations in western Greenland, we collected 86 cobbles from the current ice sheet margin and nine cobbles exposed on the modern proglacial land surface. We measured the concentration of in situ 10 Be in all cobbles (n = 95) and 26 Al and 14 C in a subset (n = 14). Cobbles deposited during Holocene retreat have 10 Be exposure ages generally consistent with the timing of ice retreat determined by other methods. Conversely, most of the 86 subglacial cobbles contain very low concentrations of 10 Be (median 1.0×10 3 atoms g –1 ), although several have ~10 4 and one has ~10 5 atoms g –1 . The low concentrations of 10 Be in most subglacial cobbles imply that their source areas under the Greenland Ice Sheet are deeply eroded, preserving minimal evidence of surface or near-surface exposure. The presence of measurable 14 C in ten of the cobbles requires that they experienced cosmogenic nuclide production within the past ~30 ka; however, 14 C/ 10 Be ratios of ~6 suggest that nuclide production occurred during shielding by overlying material. Only two of the 86 subglacial cobbles definitively have cosmogenic nuclide concentrations consistent with prior surface exposure. Overall, isotopic analysis of subglacial cobbles indicates that much of western Greenland's subglacial landscape is characterized by deep erosion and minimal subaerial exposure.

58 GEOSCIENCES↗

Many roads to the seam: How conformational flexibility drives nonadiabatic relaxation in a prototypical tetrapyrrolic chromophore

Large and structurally flexible chromophores pose challenges for in silico modeling of photodeactivation due to the many vibrational modes that can funnel the system toward energy degeneracy. In this work, we examine how the multiple degrees of freedom in biliverdin, a prototypical tetrapyrrolic chromophore, cooperate to drive access to the S 1 /S 0 intersection seam in vacuo. We begin by mapping the ground-state potential energy surface to identify representative biliverdin conformers relevant to photoexcitation. We then use a CASSCF-based framework to map the excited-state landscape and characterize the intersection seam, identifying distinct conical-intersection types. Finally, we employ ab initio multiple spawning to resolve the dynamical pathways by which the system accesses these regions. DFT potential-energy and free-energy mappings indicate that, although several conformers are relevant, the “locked-helix” ZsZsZs conformer predominates in the ground state. The intersection seam comprises numerous geometrically distinct regions characterized by varying degrees and combinations of dihedral torsion, pyramidalization, and bond-length alternation. Yet only select regions lie within energetic reach, and moderate barriers separate them from the S 1 minimum. Nonadiabatic dynamics combined with multivariate analyses show that, despite extensive mode coupling during deactivation that guides the system toward multiple regions of the seam, a single dihedral torsion, together with bond-length alternation, predominantly drives energy degeneracy. This work offers new insight into biliverdin’s intrinsic photochemical response and underscores a general feature of flexible chromophores: many modes may participate during photorelaxation, but only a limited subset ultimately dictates seam accessibility.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Geographical Variation in Community Divergence: Insights from Tropical Forest Monodominance by Ectomycorrhizal Trees

Convergence occurs in both species traits and community structure, but how convergence at the two scales influences each other remains unclear. To address this question, we focus on tropical forest monodominance, in which a single, often ectomycorrhizal (EM) tree species occasionally dominates forest stands within a landscape otherwise characterized by diverse communities of arbuscular mycorrhizal (AM) trees. Such monodominance is a striking potential example of community divergence resulting in alternative stable states. However, it is observed only in some tropical regions. A diverse suite of AM and EM trees locally codominate forest stands elsewhere. We develop a hypothesis to explain this geographical difference using a simulation model of plant community assembly. Simulation results suggest that in a region with a few EM species (e.g., South America), EM trees experience strong selection for convergent traits that match the abiotic conditions of the environment. Consequently, EM species successfully compete against other species to form monodominant stands via positive plant-soil feedbacks. By contrast, in a region with many EM species (e.g., Southeast Asia), species maintain divergent traits because of complex plant-soil feedbacks, with no species having traits that enable monodominance. An analysis of plant trait data from Borneo and Peruvian Amazon was inconclusive. Furthermore, this work highlights the utility of geographical comparison in understanding the relationship between trait convergence and community convergence.

59 BASIC BIOLOGICAL SCIENCES↗

Methane emission hotspots in a boreal forest-fen mosaic potentially linked to deep taliks

Permafrost thaw is transforming boreal forests into mosaics of wetlands and drier uplands. Topographic controls on hydrological and ecological conditions impact methane (CH 4 ) fluxes, contributing to uncertainty in local and regional CH 4 budgets and underlying drivers. The objective of this study was to explore CH 4 fluxes and their drivers in a transitioning boreal forest-fen ecosystem (Goldstream Valley, Alaska, USA). This landscape is characterized by thawing discontinuous permafrost and heterogeneous mosaics of fens, collapse-scar channels, and small mounds of permafrost soils. From a survey in July 2021, observed chamber CH4 fluxes included fen areas with intermediate to very high emissions (29.8–635.3 mg CH 4 m −2 d −1 ), clustered locations with CH 4 uptake (−2.11 to −0.7 mg CH 4 m −2 d −1 ), and three anomalous emission hotspots (342.4–772.4 mg CH 4 m −2 d −1 ) that were located near samples with lower emissions. Some surface and near-surface variables partially explained the spatial variation in CH 4 flux. Log-transformed CH 4 flux had a positive linear relationship with soil moisture at 20 cm depth ( R 2 = 0.31, p -value < 1e-5) and negative linear relationships with microtopography ( R 2 = 0.13, p -value < 0.006) and slope ( R 2 = 0.28, p -value < 2e-5). Methane emissions generally occurred in flat, wet, graminoid-dominated fens, whereas CH 4 uptake occurred on permafrost mounds dominated by feather mosses and woody vegetation. However, the CH 4 hotspots occurred on drier, slightly sloped locations with low or undetectable near-surface methanogen abundance, suggesting that CH 4 was produced in deeper soils. When the hotspot samples were omitted, log-transformed CH 4 flux had a positive linear relationship with near-surface methanogen abundance ( R 2 = 0.29, p -value = 0.0023), and stronger linear relationships with soil moisture, slope, and soil macronutrient concentrations. Our findings suggest that some CH 4 emission hotspots could arise from CH 4 in deep taliks. The inference that methanogenesis occurs in deep taliks was strengthened by the identification of intrapermafrost taliks across the study area using low-frequency geophysical induction. This study assesses surface spatial heterogeneity in the context of subsurface permafrost conditions and highlights the complexity of CH 4 flux patterns in transitioning forest-wetland ecosystems. To better inform regional CH 4 budgets, further research is needed to understand the spatial distribution of terrestrial CH 4 hotspots and to resolve their surface, near-surface, and subsurface drivers.

boreal↗

Exploring the energy landscape of RBMs: reciprocal space insights into bosons, hierarchical learning and symmetry breaking

Deep generative models have become ubiquitous due to their ability to learn and sample from complex distributions. Despite the proliferation of various frameworks, the relationships among these models remain largely unexplored, a gap that hinders the development of a unified theory of AI learning. In this work, we address two central challenges: clarifying the connections between different deep generative models and deepening our understanding of their learning mechanisms. We focus on Restricted Boltzmann Machines (RBMs), a class of generative models known for their universal approximation capabilities for discrete distributions. By introducing a reciprocal space formulation for RBMs, we reveal a connection between these models, diffusion processes, and systems of coupled bosons. Our analysis shows that at initialization, the RBM operates at a saddle point, where the local curvature is determined by the singular values of the weight matrix, whose distribution follows the Marc̆enko-Pastur law and exhibits rotational symmetry. During training, this rotational symmetry is broken due to hierarchical learning, where different degrees of freedom progressively capture features at multiple levels of abstraction. This leads to a symmetry breaking in the energy landscape, reminiscent of Landau’s theory. This symmetry breaking in the energy landscape is characterized by the singular values and the weight matrix eigenvector matrix. We derive the corresponding free energy in a mean-field approximation. We show that in the limit of infinite size RBM, the reciprocal variables are Gaussian distributed. Our findings indicate that in this regime, there will be some modes for which the diffusion process will not converge to the Boltzmann distribution. To illustrate our results, we trained replicas of RBMs with different hidden layer sizes using the MNIST dataset. Our findings not only bridge the gap between disparate generative frameworks but also shed light on the fundamental processes underpinning learning in deep generative models.

97 MATHEMATICS AND COMPUTING↗

Digital Astronaut Photography: A Discovery Dataset for Archaeology

Astronaut photography acquired from the International Space Station (ISS) using commercial off-the-shelf cameras offers a freely-accessible source for high to very high resolution (4-20 m/pixel) visible-wavelength digital data of Earth. Since ISS Expedition 1 in 2000, over 373,000 images of the Earth-Moon system (including land surface, ocean, atmospheric, and lunar images) have been added to the Gateway to Astronaut Photography of Earth online database (http://eol.jsc.nasa.gov ). Handheld astronaut photographs vary in look angle, time of acquisition, solar illumination, and spatial resolution. These attributes of digital astronaut photography result from a unique combination of ISS orbital dynamics, mission operations, camera systems, and the individual skills of the astronaut. The variable nature of astronaut photography makes the dataset uniquely useful for archaeological applications in comparison with more traditional nadir-viewing multispectral datasets acquired from unmanned orbital platforms. For example, surface features such as trenches, walls, ruins, urban patterns, and vegetation clearing and regrowth patterns may be accentuated by low sun angles and oblique viewing conditions (Fig. 1). High spatial resolution digital astronaut photographs can also be used with sophisticated land cover classification and spatial analysis approaches like Object Based Image Analysis, increasing the potential for use in archaeological characterization of landscapes and specific sites.

Stefanov, William L.↗

Measuring Multiple Cosmogenic Nuclides in Glacial Cobbles Sheds Light on Greenland Ice Sheet Processes

The extent and erosivity of the Greenland Ice Sheet during the Pleistocene remain uncertain due to the paucity of evidence predating the Last Glacial Maximum. Here, we employ a novel approach, cosmogenic nuclide analysis of individual subglacial cobbles, which allows us to infer the behavior of the ice sheet over time and space. From three locations in western Greenland, we collected 86 cobbles from the current ice sheet margin and nine cobbles exposed on the modern proglacial land surface. We measured the concentration of in situ 10Be in all cobbles (n= 95) and 26Al and 14C in a subset (n= 14). Cobbles deposited during Holocene retreat have 10Be exposure ages generally consistent with the timing of ice retreat determined by other means. Conversely, most of the 86 subglacial cobbles contain very low concentrations of 10Be (median 1.0 x 10^3 atoms g-1), although several have ~10^4 and one has ~10^5 atoms g-1. The low concentrations of 10Be in most subglacial cobbles imply that their source areas under the Greenland Ice Sheet are deeply eroded, preserving minimal evidence of surface or near-surface exposure. The presence of measurable 14C in ten of the cobbles requires that they experienced cosmogenic nuclide production within the past ~30 ka; however, 14C/10Be ratios of ~6 suggest that production occurred beneath thin overlying rock, sediment, and/or ice, where the muon component of 14C production dominates. Only two of the 86 subglacial cobbles definitively have cosmogenic nuclide concentrations consistent with prior surface exposure during times of reduced ice extent. Overall, isotopic analysis of subglacial cobbles indicates that western Greenland's subglacial landscape is characterized by deep erosion and minimal subaerial exposure.

Pliocene↗

Measuring multiple cosmogenic nuclides in glacial cobbles sheds light on Greenland Ice Sheet processes

The behavior of the Greenland Ice Sheet during the Pleistocene remains uncertain due to the paucity of evidence predating the Last Glacial Maximum. Here, we employ a novel approach, cosmogenic nuclide analysis of individual subglacially-derived cobbles, which allows us to make inferences about ice sheet processes and subglacial erosion. From three locations in western Greenland, we collected 86 cobbles from the current ice sheet margin and nine cobbles exposed on the modern proglacial land surface. We measured the concentration of in situ 10Be in all cobbles (n =95) and 26Al and 14C in a subset (n =14). Cobbles deposited during Holocene retreat have 10Be exposure ages generally consistent with the timing of ice retreat determined by other methods. Conversely, most of the 86 subglacial cobbles contain very low concentrations of 10Be (median 1.0×10^3atoms/g), although several have ∼104and one has ∼10^5atoms/g. The low concentrations of 10Be in most subglacial cobbles imply that their source areas under the Greenland Ice Sheet are deeply eroded, preserving minimal evidence of surface or near-surface exposure. The presence of measurable 14C in ten of the cobbles requires that they experienced cosmogenic nuclide production within the past ∼30 ka; however, 14C/10Be ratios of ∼6 suggest that nuclide production occurred during shielding by overlying material. Only two of the 86 subglacial cobbles definitively have cosmogenic nuclide concentrations consistent with prior surface exposure. Overall, isotopic analysis of subglacial cobbles indicates that much of western Greenland’s subglacial landscape is characterized by deep erosion and minimal subaerial exposure.

cosmogenic nuclides↗

The Resilience Planning Landscape for Communities and Electric Utilities

Synapse Energy Economics has conducted structured interviews to better characterize the current landscape of resilience planning within and across jurisdictions. Synapse interviewed representatives of a diverse group of communities and their electric utilities. The resulting case studies span geographies and utility regulatory structures and represent a range of threats. They also vary in terms of population density and size. This report summarizes our approach and the findings gleaned from these conversations. All the communities and utilities we interviewed see increased interest in and commitment of resources for energy-related resilience. The risks and consequences these communities and utilities faced in the past, face now, and will face in the future drove them to improve engagement, advance processes, further decision-making, and in many cases invest in projects. While no process used by communities and utilities was the same, the different processes used by communities and utilities allowed each one to make progress in its own way. Several approaches are emerging that can provide good models for other communities and utilities with an interest in improving resilience.

29 ENERGY PLANNING, POLICY, AND ECONOMY↗