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Results for “Landscape Evolution”

Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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At least 55 records · Page 3
All sourcesNASA NTRSDOE OSTI
DOE OSTI2023

Numerical Study of Coupled Water and Vapor Flow, Heat Transfer, and Solute Transport in Variably-Saturated Deformable Soil During Freeze-Thaw Cycles

As climate change intensifies, soil water flow, heat transfer, and solute transport in the active, unfrozen zones within permafrost and seasonally frozen ground exhibit progressively more complex interactions that are difficult to elucidate with measurements alone. For example, frozen conditions impede water flow and solute transport in soil, while heat and mass transfer are significantly affected by high thermal inertia generated from water-ice phase change during the freeze-thaw cycle. To assist in understanding these subsurface processes, the current study presents a coupled two-dimensional model, which examines heat conduction-convection with water-ice phase change, soil water (liquid water and vapor) and groundwater flow, advective-dispersive solute transport with sorption, and soil deformation (frost heave and thaw settlement) in variably saturated soils subjected to freeze-thaw actions. This coupled multiphysics problem is numerically solved using the finite element method. The model's performance is first verified by comparison to a well-documented freezing test on unsaturated soil in a laboratory environment obtained from the literature. Then based on the proposed model, we quantify the impacts of freeze-thaw cycles on the distribution of temperature, water content, displacement history, and solute concentration in three distinct soil types, including sand, silt and clay textures. The influence of fluctuations in the air temperature, groundwater level, hydraulic conductivity, and solute transport parameters was also comparatively studied. The results show that (a) there is a significant bidirectional exchange between groundwater in the saturated zone and soil water in the vadose zone during freeze-thaw periods, and its magnitude increases with the combined influence of higher hydraulic conductivity and higher capillarity; (b) the rapid dewatering ahead of the freezing front causes local volume shrinkage within the non-frozen region when the freezing front propagates downward during the freezing stage and this volume shrinkage reduces the impact of frost heave due to ice formation. This gradually recovers when the thawed water replenishes the water loss zone during the thawing stage; and (c) the profiles of soil moisture, temperature, displacement, and solute concentration during freeze-thaw cycles are sensitive to the changes in amplitude and freeze-thaw period of the sinusoidal varying air temperature near the ground surface, hydraulic conductivity of soil texture, and the initial groundwater levels. Our modeling framework and simulation results highlight the need to account for coupled thermal-hydraulic-mechanical-chemical behaviors to better understand soil water and groundwater dynamics during freeze-thaw cycles and further help explain the observed changes in water cycles and landscape evolution in cold regions.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2026

Energy Infrastructure Futures: A Multiscale Evaluation of Projected Power Plant Siting Across the Western Interconnection

The US Western Interconnection is facing unprecedented challenges in the form of less predictable peak demand, increasingly diverse generating resources, and fast-growing loads due to the onset of artificial intelligence, hyperscale computing, and electrification. Projecting where future generation may be developed is critical to maintaining a robust and resilient electric grid under this mounting uncertainty and variability. Using an integrated multisectoral, multiscale modeling framework that links a human-Earth systems model, an hourly load model, a geospatial power plant siting model, and an hourly grid operations model, we evaluate the power plant landscape evolution under eight alternative futures between 2020 and 2055. These futures represent a wide but plausible range of atmospheric conditions, emissions constraints, and economic, technological, and population growth assumptions. We find that local-level development can vary substantially both by generation type and capacity buildout across these futures. Specific regions of the Western Interconnection are projected to see large amounts of capacity development regardless of the future scenario. We additionally determine that projected power plant locations are more heavily influenced by the cost to interconnect to the electric grid than the locational energy value.

Mongird, Kendall↗
DOE OSTI2020

Landscape responses to intraplate deformation in the Kalahari constrained by sediment provenance and chronology in the Okavango Basin

The structural depression that occupies the Okavango Basin in southern Africa comprises a depo-centre within the intracratonic Kalahari Basin where sediments of the Cenozoic Kalahari Group have accumulated. The Okavango Basin has been formed due to stretching and subsidence at an area of diffused deformation, southwestwards to the main East African Rift System (EARS). Sediments from two full Kalahari Group sequences, located on opposite sides of the Gumare Fault that forms a major fault within the Okavango Basin, were studied to determine their provenance and chronology. Terrestrial Cosmogenic Nuclide (TCN) 26 Al/ 10 Be burial dating was used to constrain a chronostratigraphical framework, and Pb, Sr, and Nd isotopic ratios combined with geochemical and sedimentological analyses were applied to track the source areas of the sediments.Results indicate the following sequence of basin filling: (a) Accumulation between ca. 4–3 Ma during which the currently downthrown (southern) block received a mixture of sediments mostly from the Choma-Kalomo, Ghanzi-Chobe, and Damara terranes, and possibly from the Lufilian Belt and/or Karoo basalts during earlier stages of deposition. Simultaneously, the upthrown (northern) block received sediments from more distant Archean sources in the Zimbabwe and/or Kasai cratons, (b) Hiatus in sedimentation occurred at both sites between ca. 3–2 Ma, (c) Sediments on both sides of the Gumare Fault share a similar source (Angolan Shield) with minor distinct contributions to the downthrown block from the Kasai Craton and local sources input to the upthrown block, and (d) Regional distribution of aeolian sand since at least 1 Ma. The change in source areas is attributed to rearrangements of the drainage systems that were probably linked to vertical crustal movements on the margins of the Okavango Basin. The tectonically induced morphodynamics controlled the landscape evolution of the endorheic basin where vast lakes, wetlands and salt pans have developed through time.

58 GEOSCIENCES↗
DOE OSTI2019

Simulating 10,000 Years of Erosion to Assess Nuclear Waste Repository Performance

Long-term environmental performance assessments of natural processes, including erosion, are critically important for waste repository site evaluation. Yet, assessing a site’s ability to continuously function is challenging due to parameter uncertainty and compounding nonlinear processes. In lieu of unavailable site data for model calibration, we present a workflow to include multiple sources of surrogate data and reduced-order models to validate parameters for a long-term erosion assessment of a low-level radioactive nuclear waste repository. We apply this new workflow to a low-level waste repository on mesas in Los Alamos National Laboratory in New Mexico. To account for parameter uncertainty, we simulate high-, moderate-, and low-erosion cases. The assessment extends to 10,000 years, which results in large erosion uncertainties, but is necessary given the nature of the interred waste. Our long-term erosion analysis shows that high-erosion scenarios produce rounded mesa tops and partially filled canyons, diverging from the moderate-erosion case that results in gullies and sharp mesa rims. Our novel model parameterization workflow and modeling exercise demonstrates the utility of long-term assessments, identifies sources of erosion forecast uncertainty, and demonstrates the utility of landscape evolution model development. We end with a discussion on methods to reduce assessment uncertainty and increase model confidence.

12 MANAGEMENT OF RADIOACTIVE AND NON-RADIOACTIVE W↗
DOE OSTI2024

Technical note: Optimizing the in situ cosmogenic 36 Cl extraction and measurement workflow for geologic applications

Abstract. In situ cosmogenic 36Cl analysis by accelerator mass spectrometry (AMS) is routinely employed to date Quaternary surfaces and assess rates of landscape evolution. However, standard laboratory preparation procedures for 36Cl dating require the addition of large amounts of isotopically enriched chlorine spike solution; these solutions are expensive and increasingly difficult to acquire from commercial sources. In addition, the typical workflow for 36Cl dating involves measuring both 35Cl/37Cl and 36Cl/Cl concurrently on the high-energy (post-accelerator) end of the AMS system, but 35Cl/37Cl determinations using this technique can be complicated by isotope fractionation and system memory during measurement. The traditional workflow also does not provide 36Cl extraction laboratories with the data needed to calculate native Cl concentrations in advance of 36Cl/Cl measurements. In light of these concerns, we present an improved workflow for extracting and measuring chlorine in geologic materials. Our initial step is to characterize 35Cl/37Cl on sample aliquots of up to ∼1 g prepared in Ag(Cl, Br) matrices, which greatly reduces the amount of isotopically enriched spike solution required to measure native Cl content in each sample. To avoid potential issues with isotope fractionation through the accelerator, 35Cl/37Cl is measured on the low-energy, pre-accelerator end of the AMS line. Then, for 36Cl/Cl measurements, we extract Cl as AgCl or Ag(Cl, Br) in analytical batches with a consistent total Cl load across all samples; this step is intended to minimize source memory effects during 36Cl/Cl measurements and allows the preparation of AMS standards that are customized to match known Cl contents in the samples. To assess the efficacy of this extraction and measurement workflow, we compare chlorine isotope ratio measurements on seven geologic samples prepared using standard procedures and the updated workflow. Measurements of 35Cl/37Cl and 36Cl/Cl are consistent between the two workflows, and 35Cl/37Cl values measured using our methods have considerably higher precision than those measured following standard protocols. The chemical preparation and measurement workflow presented here (1) reduces the amount of isotopically enriched chlorine spike used per rock sample by up to 95 %; (2) identifies rocks with high native Cl concentrations, which may be lower priority for 36Cl surface exposure dating, at an early stage of analysis; and (3) allows laboratory users to maintain control over the total chlorine content within and across analytical batches. These methods can be incorporated into existing laboratory and AMS protocols for 36Cl analyses and will increase the accessibility of 36Cl dating for geologic applications.

58 GEOSCIENCES↗
NASA NTRS1985

Quantitative analysis in megageomorphology

Megageomorphology is the study of regional topographic features and their relations to independent geomorphic variables that operate at the regional scale. These independent variables can be classified as either tectonic or climatic in nature. Quantitative megageomorphology stresses the causal relations between plate tectonic factors and landscape features or correlations between climatic factors and geomorphic processes. In addition, the cumulative effects of tectonics and climate on landscape evolution that simultaneously operate in a complex system of energy transfer is of interst. Regional topographic differentiation, say between continents and ocean floors, is largely the result of the different densities and density contrasts within the oceanic and continental lithosphere and their isostatic consequences. Regional tectonic processes that alter these lithospheric characteristics include rifting, collision, subduction, transpression and transtension.

Mayer, L.↗
NASA NTRS2003

The Surface Roughness of Terrains on Mars

The RMS roughness measurements produced by Neumann et al. from Mars Orbiter Laser Altimeter (MOLA) data provide unique information about surface height variations at an effective length scale of < 75 m. Roughness at this scale is important not only for landing site safety considerations, but also for assessment of landscape evolution, which depends on emplacement mechanisms and erosional/depositional processes. Here we present an examination of the global surface roughness map with discussion of terrain types and potential formation and/or alteration mechanisms. Spatially coherent terrain types were identified based on inspection of the roughness map. These terrains were further characterized through analysis of morphology and geology using MOLA topography, MOC wide-angle, and MOC narrow-angle images as well as the geologic maps produced by Scott & Tanaka and Greeley & Guest. All of these data were used to explore potential formation and modification processes.

K S Deal↗
NASA NTRS2003

Applicability of Complexity Theory to Martian Fluvial Systems: A Preliminary Analysis

In the last 15 years, terrestrial geomorphology has been revolutionized by the theories of chaotic systems, fractals, self-organization, and selforganized criticality. Except for the application of fractal theory to the analysis of lava flows and rampart craters on Mars, these theories have not yet been applied to problems of Martian landscape evolution. These complexity theories are elucidated below, along with the methods used to relate these theories to the realities of Martian fluvial systems.

Rosenshein, E. B.↗
NASA NTRS2005

Lunar and Planetary Science XXXVI, Part 13

Contents include the following: A Fast, Non-Destructive Method for Classifying Ordinary Chondrite Falls Using Density and Magnetic Susceptibility. An Update on Results from the Magnetic Properties Experiments on the Mars Exploration Rovers, Spirit and Opportunity. Measurement Protocols for In Situ Analysis of Organic Compounds at Mars and Comets. Piping Structures on Earth and Possibly Mars: Astrobiological Implications. Uranium and Lead in the Early Planetary Core Formation: New Insights Given by High Pressure and Temperature Experiments. The Mast Cameras and Mars Descent Imager (MARDI) for the 2009 Mars Science Laboratory. MGS MOC: First Views of Mars at Sub-Meter Resolution from Orbit. Analysis of Candor Chasma Interior Layered Deposits from OMEGA/MEX Spectra. Analysis of Valley Networks on Valles Marineris Plateau Using HRSC/MEX Data. Solar Abundance of Elements from Neutron-Capture Cross Sections. Preliminary Evaluation of the Secondary Ion/Accelerator Mass Spectrometer, MegaSIMS. Equilibrium Landforms in the Dry Valleys of Antarctica: Implications for Landscape Evolution and Climate Change on Mars. Continued Study of Ba Isotopic Compositions of Presolar Silicon Carbide Grains from Supernovae. Paleoenviromental Evolution of the Holden-Uzboi Area. Stability of Magnesium Sulfate Minerals in Martian Environments. Tungsten Isotopic Constraints on the Formation and Evolution of Iron Meteorite Parent Bodies. Migration of Dust Particles and Volatiles Delivery to the Inner Planets. On the Sitting of Trapped Noble Gases in Insoluble Organic Matter of Primitive Meteorites. Trapping of Xenon Upon Evaporation-Condensation of Organic Matter Under UV Irradiation: Isotopic Fractionation and Electron Paramagnetic Resonance Analysis. Stability of Water on Mars. A Didactic Activity. Analysis of Coronae in the Parga Chasma Region, Venus. Photometric and Compositional Surface Properties of the Gusev Crater Region, Mars, as Derived from Multi-Angle, Multi-Spectral Investigation of Mars Express HRSC Data. Mapping Compositional Diversity on Mars: Spatial Distribution and Geological Implications. A New Simulation Chamber for Studying Planetary Environments. Folded Structure in Terra Sirenum. Mars. Nitrogen-Noble Gas Static Mass Spectrometry of Genesis Collector Materials. Neon Isotope Heterogeneity in the Terrestrial Mantle: Implication for the Acquisition of Volatile Elements in Terrestrial Planets. The Cosmic Clock, the Cycle of Terrestrial Mass Extinctions.

Source record↗
NASA NTRS2020

The Biological Potential of Present-day Mars

In the mid-1970s the twin Viking Landers conducted three biological experiments in two different locations on the surface of Mars. Results from these experiments did not provide conclusive evidence of biological activity, and instead they were consistent with abiotic chemical reactions in the regolith. The paradigm established by the Viking missions is that the near-surface environment on Mars is too cold, dry, and hostile for life as we know it. Our understanding of the limits of metabolic activity and growth in terrestrial organisms, together with ecological studies in terrestrial analog environments, some of which approximate the temperature and dryness conditions on Mars, seem to support this view. But data gathered by surface and orbital assets in the past two decades suggests that liquid water could still be an important agent of landscape evolution over timescales ranging from seasons to millions of years. In addition, the tantalizing discovery of both liquid water buried deep beneath the southern polar deposits and fluctuating levels of methane in the atmosphere make the existence of a subsurface biosphere both possible and realistic. These discoveries have sparked a renewed interest on the biological potential of present-day Mars, and the possibility of extant life. This chapter reviews the environmental aspects most relevant to the biological potential of present-day Mars, emphasizing the near-surface environment that will be sampled and investigated by future robotic missions.

Life↗
NASA NTRS2020

Ancient Martian aeolian sand dune deposits recorded in the stratigraphy of Valles Marineris and implications for past climates

Aeolian sediment transport, deposition, and erosion have been ongoing throughout Mars’ history. This record of widespread aeolian processes is preserved in landforms and geologic units that retain important clues about past environmental conditions including wind patterns. In this study we describe landforms within Melas Chasma, Valles Marineris, that occur in distinct groups with linear to crescentic shapes, arranged with a characteristic wavelength; some possess slope profiles analogous to modern sand dunes, yet show evidence for lithification. Based on the features’ dimensions, asymmetry, and spatial patterns relative to modern equivalents, we interpret these landforms to be two classes of aeolian bedforms: decameter-scale mega-ripples and sand dunes. The presence of superposed erosional features and depositional units indicates these landforms were cemented and likely ancient. Melas paleo-dunes are found atop Hesperian-aged layered deposits, but we estimate them to be younger, likely lithified in the Amazonian period. Although a range of degradation was observed, some paleo-dunes are >10 m tall and maintain steep lee sides (>25°), an uncommon scenario for terrestrial examples as other geologic processes lead to dune obliteration. The preserved paleo-bedform geometries are largely consistent with those of modern aeolian indicators, suggesting no major shifts in wind regime or contributing boundary conditions. Finally, we propose their appearance and context require sequential periods of dune migration, stabilization following catastrophic burial, cementation, differential erosion, exposure, and burial. The presence of wholly preserved duneforms appears to be more common on Mars compared to the Earth and may signal something important about Martian landscape evolution. Plain Language Summary Wind-driven sand dunes are common on modern Mars and the presence of certain sedimentary rock layers indicates these landforms occurred there in the past. Here, we explore features in the canyons of Valles Marineris which show characteristics frequently attributed to dunes, yet evidence for their lithification and burial is clear. Their horizontal extent, height, shape, slopes, and collective spatial patterns led to our interpretation of them as lithified dune fields. The heavily eroded appearance along with superposed elements such as craters and boulders led to the conclusion that these are relatively ancient landforms. Despite this erosion This level of preservation is rare for terrestrial sand dunes due to erosion and tectonics, thus providing an opportunity to reconstruct the various factors contributing to their history. Understanding the circumstances that led to the preservation of these ancient duneforms will yield crucial information regarding planetary sedimentary processes and the geologic history of the region.

Matthew Chojnacki↗
DOE OSTI2022

The weathered bedrock vadose zone: A hidden control on water availability in the western United States (Final Technical Report)

This report summarizes the research completed during the project entitled "The weathered bedrock vadose zone: A hidden control on water availability in the western United States" (Award: DE-SC0018039). The report covers work completed between 9/15/17 and 9/14/20. The objective of the exploratory project work was to evaluate the overarching hypothesis that the subsurface underlying actively eroding landscapes is systematically structured as a result of a balance between weathering and erosion and that this structure leads to dynamic moisture storage within weathered rock. To accomplish project objectives, we characterized hillslope weathering profile structure and conducted subsurface moisture monitoring across four study sites with comparable bedrock types but differing erosion rate and hydroclimate: The Angelo Coast Range Reserve (ACRR), Sagehorn-Russell Ranch (SRR), Antelope Valley Ranch (AVR), and the LBNL Watershed Function Scientific Focus Area (SFA). New characterization and monitoring infrastructure at the AVR and SFA sites was established through this project and enables long-term monitoring of hydrologic and carbon fluxes at the sites for comparison with long-term monitoring in other sites. Deep drilling, downhole logging, and characterization of chemistry and porosity of rock recovered from drilling reveals two weathering fronts across the sites. A shallower front is marked by the extent of pervasive fracturing and oxidation of pyrite and organic carbon. A deeper weathering front is marked by the appearance of open fractures and discoloration. At the AVR site, multiple ridge tops of different hillslope length were investigated to establish the relationship between the weathering front and topography. Drilling reveals that the fraction of the hillslope relief that is weathered scales with hillslope length, consistent with the theoretical framework that guided the project relating groundwater drainage with landscape evolution. With the establishment of new boreholes, we have documented significant water storage in weathered bedrock using low-field borehole nuclear magnetic resonance (NMR) across all four sites. In the upper 4 m of bedrock, the average water contents at ACRR, AVR, SRR, and SFA are approximately 25%, 16%, 25%, 23% respectively. At the ACRR site, where long-term monitoring via neutron probe surveys and time-domain transmission sensors are available, we have demonstrated that NMR reliably records moisture content and importantly, moisture content dynamics in weathered bedrock. Across all sites, our NMR monitoring has also revealed that a considerable fraction of the water storage occurs in fractures or pores that are significantly larger than the fine-grained bedrock matrix of the parent rock. To identify the proportion of water storage occurring in fractures and large pores, we analyzed the NMR signal by evaluating both the sum of echoes and an inversion of the NMR signal for a distribution of T2 relaxation times. Both methods reveal that at least 20% of the water storage occurs in fractures and larger pores across all sites. To constrain the interpretation of the in-situ field-scale NMR measurements, we compare the NMR response in the field to independent pore-structure information obtained via helium pycnometry. Results support the inference that dynamic seasonal water storage is dominantly restricted to the fracture network, which can reach 7% of the total volume. This dynamic range in water content is comparable to that of some soils, underscoring the need to understand how this region of the Earth System is structured, and functions as a hydrologic reservoir.

58 GEOSCIENCES↗
DOE OSTI2019

Quantifying Rates of Erosion Using Historical Aerial Photos - 19478

Erosion can play an important role in the fate and transport of waste at sites where disposal of long-lived waste is anticipated. The statistical characterization of key processes related to erosion is essential to the understanding of site stability through time. In this work multi-temporal historical aerial images are analyzed in conjunction with orthophotography and Lidar data to develop probability distributions for variables representing important erosion processes. Scans of photographic negatives were obtained for multiple photographs and several negatives were scanned with a calibrated photogrammetric scanner by Geomni (formerly Blue Skies Consulting) in Belen, New Mexico. Other negatives were provided by USDA or scanned on a high-resolution, large format media scanner in the United States National Archives Cartographic Research Room, College Park, Maryland (1939). An additional set of aerial photographs was obtained from the USGS EROS Data Center web site. For other years, photographic prints were available for aerial photography. Several prints were scanned with a large-format media scanner at 1200 dpi. Ground control points for selected digital images used in the stereoscopic analyses were identified in ArcMap. Ground control points were collected by matching features which could be identified in the aerial photography as well as the orthophotography or shaded relief imagery from the Lidar dataset. Such features included fence line intersections, road intersections, railroad bridges, and structures, depending on the age of the photography. Many old fence lines and abandoned roads remained visible in the shaded relief imagery while they were completely obscured by tree canopy in modern photography. Ground control elevations were sampled from the Lidar-based DEM or directly from point clouds. The image coordinates and matching three-dimensional projected coordinates of the ground control points were exported to IDL where parameters for a three-dimensional direct linear transformation (DLT) were obtained. Built-in singular value decomposition routines were used to solve an overdetermined set of equations for the eleven parameters of the DLT for a particular historical photograph. A solution to the DLT parameters was obtained for each historical aerial photograph in which features of interest were identified using the stereoscope. Ultimately, this process resulted in the identification of locations for features like gully heads using both the Lidar dataset and projection of the estimated location from the historical aerial photo under consideration back to the Lidar dataset. The distance between the estimate of the location from the historical image and that of the Lidar dataset was the estimated distance the feature has moved. This distance was then divided by the number of years between the Lidar dataset and the year of the historical aerial image of interest to get a rate of movement through time. This was done for several dozen points on each historical aerial image. There was inevitable uncertainty associated with the estimation of points from the historical aerial imagery. This includes estimation of changes in locations of features like gully heads through time. In this work a method to estimate the uncertainty associated with measurements of locations of features using the stereoscopic analysis is developed and applied. For features with locations in space that do not change (e.g., road intersections, etc.) the difference in measurements of locations from the Lidar dataset and that of the estimate from the historical aerial image provides an observation of the measurement error. These points used to estimate the measurement error are referred to as control points. For each of the historical aerial images, a different measurement error distribution is estimated using control points. These measurement errors are combined with the estimated distances from the stereoscopic analyses to produce distributions of gully retreat rates and hillslope erosion rates used along with output from Erosion Working Group (EWG) Landscape Evolution Models (LEMs) to provide statistical probability distributions for input into the PPA Model. Specifically, gully head retreat rate and gully widening rate were characterized using statistical probability distributions. The central limit theorem was then applied to develop rates that represent long-term averages that are used to inform a PPA Model built in GoldSim. The importance of these rates with respect to characterization of future risk can then assessed using sensitivity analyses. This provides an approach to determine if subsequent reduction of the uncertainty associated with the probability distributions of erosion rates will correspond to meaningful reduction in the estimation of future risk from the site. Ultimately this is a general method that utilizes historical aerial imagery to estimate rates of erosion with uncertainty. This information can be used to inform PPA models to project future risks from a given site. (authors)

12 MANAGEMENT OF RADIOACTIVE AND NON-RADIOACTIVE W↗
DOE OSTI2019

Targeted evolution of pinning landscapes for large superconducting critical currents

The ability of type II superconductors to carry large amounts of current at high magnetic fields is a key requirement for future design innovations in high-field magnets for accelerators and compact fusion reactors, and largely depends on the vortex pinning landscape comprised of material defects. The complex interaction of vortices with defects that can be grown chemically, e.g., self-assembled nanoparticles and nanorods, or introduced by postsynthesis particle irradiation precludes a priori prediction of the critical current and can result in highly nontrivial effects on the critical current. Here, we borrow concepts from biological evolution to create a vortex pinning genome based on a genetic algorithm, naturally evolving the pinning landscape to accommodate vortex pinning and determine the best possible configuration of inclusions for two different scenarios: a natural evolution process initiating from a pristine system and one starting with preexisting defects to demonstrate the potential for a postprocessing approach to enhance critical currents. Furthermore, the presented approach is even more general and can be adapted to address various other targeted material optimization problems.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗
DOE OSTI2018

MERS-CoV and H5N1 influenza virus antagonize antigen presentation by altering the epigenetic landscape

Convergent evolution dictates that diverse groups of viruses will target both similar and distinct host pathways in order to manipulate the immune response and improve infection. In this study, we sought to leverage this uneven viral antagonism to identify critical host factors that govern disease outcome. Utilizing a systems based approach, we examined differential regulation of IFNγ dependent genes following infection with highly pathogenic viruses including influenza (H5N1-VN1203, H1N1-CA04) and coronaviruses (SARS-CoV, MERS-CoV). Categorizing by function, we observed down regulation of genes associated with antigen presentation following both H5N1-VN1203 and MERS-CoV infection. Further examination revealed global down regulation of antigen presentation genes and was confirmed by proteomics for both H5N1-VN1203 and MERS-CoV infection. Importantly, epigenetic analysis suggested that DNA methylation rather than histone modification plays a crucial role in MERS-CoV mediated antagonism of antigen presentation genes; in contrast, H5N1-VN1203 likely utilizes a combination of epigenetic mechanisms to target antigen presentation. Altogether, the results indicate a common approach utilized by H5N1-VN1203 and MERS-CoV to modulate antigen presentation and the host adaptive immune response.

59 BASIC BIOLOGICAL SCIENCES↗
NASA NTRS1979

Evolution of Martian polar landscapes - Interplay of long-term variations in perennial ice cover and dust storm intensity

The discovery of a new type of Martian polar terrain, called undulating plain, is reported and the evolution of the plains and other areas of the Martian polar region is discussed in terms of the trapping of dust by the perennial ice cover. High-resolution Viking Orbiter 2 observations of the north polar terrain reveal perennially ice-covered surfaces with low relief, wavelike, regularly spaced, parallel ridges and troughs (undulating plains) occupying areas of the polar terrain previously thought to be flat, and associated with troughs of considerable local relief which exhibit at least partial annual melting. It is proposed that the wavelike topography of the undulating plains originates from long-term periodic variations in cyclical dust precipitation at the margin of a growing or receding perennial polar cap in response to changes in insolation. The troughs are proposed to originate from areas of steep slope in the undulating terrain which have lost their perennial ice cover and have become incapable of trapping dust. The polar landscape thus appears to record the migrations, expansions and contractions of the Martian polar cap.

Cutts, J. A.↗
DOE OSTI2020

How directed evolution reshapes the energy landscape in an enzyme to boost catalysis

Two steps forward—now look back Whether designed computationally or uncovered in activity screening, enzymes repurposed for biocatalysis rarely start at the peak of proficiency. However, directed evolution can in some cases increase catalytic efficiency of a poor enzyme by many orders of magnitude. Otten et al. used a suite of biochemical techniques to investigate the origins of rate enhancement in a previously evolved model enzyme. Two conformational states are present in the initial, computationally designed enzyme, but only one is active. Shifting the population toward the active state is one factor in increasing catalytic efficiency during evolution. Single mutations do not greatly increase activity, but the synergistic combination of just two out of 17 substitutions can provide most of the rate enhancement seen in the final, evolved enzyme. Science , this issue p. 1442

Science & Technology - Other Topics↗
DOE OSTI2026

The landscape of regulatory element evolution in a C4 perennial grass

Gene regulatory evolution is a well-known source of phenotypic diversity and adaptive evolution. Although cis-regulatory elements (CREs) play a vital role in gene expression evolution, the molecular evolution of CREs remains mostly unknown due to the difficulty in identifying and characterizing these functional elements. Comparative genomic analyses of noncoding DNA can be leveraged to identify conserved noncoding sequences (CNS), many of which may harbor functional CREs conserved by purifying selection. However, purely computational inference of CREs from putative CNS can be erroneous due to the complex genomic architecture in plants. One promising experimental approach to identify CREs is by profiling accessible chromatin regions (ACRs) that are often associated with the location of CREs. In this study, we use comparative genomics along with the profiling of ACRs to study the molecular evolution of putative functional noncoding regulatory regions in Panicoid grasses. We identified sets of CNS that varied in relationship to the degree of evolutionary divergence among the studied taxa, including identifying core-Panicoid-CNS. We augmented this analysis by profiling ACRs in Panicum hallii ecotypes using ATAC-seq. ACRs had low SNP density at the summit, harbored a high frequency of core-Panicoid-CNS, and were enriched with expression QTL. These data help to annotate the P. hallii genome for putative functional elements and suggest that a large proportion of these ACRs are evolving under purifying selection. Turnover in CNS and ACR between ecotypes of P. hallii identifies a small set of putatively divergent CREs that may underlie differences in gene regulation between genotypes from inland and coastal habitats. In summary, we profiled ACRs in Panicoid grasses and integrated this data with our putative CNS prediction framework, which provides unique insight into patterns of polymorphism and divergence in CREs in C4 perennial grasses.

59 BASIC BIOLOGICAL SCIENCES↗