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Generating Vegetation Leaf Area Index Earth System Data Record from Multiple Sensors: Theory - Part 1

The generation of multi-decade long Earth System Data Records (ESDRs) of Leaf Area Index (LAI) and Fraction of Photosynthetically Active Radiation absorbed by vegetation (FPAR) from remote sensing measurements of multiple sensors is key to monitoring long-term changes in vegetation due to natural and anthropogenic influences. Challenges in developing such ESDRs include problems in remote sensing science (modeling of variability in global vegetation, scaling, atmospheric correction) and sensor hardware (differences in spatial resolution, spectral bands, calibration, and information content). In this paper, we develop a physically based approach for deriving LAI and FPAR products from the Advanced Very High Resolution Radiometer (AVHRR) data that are of comparable quality to the Moderate resolution Imaging Spectroradiometer (MODIS) LAI and FPAR products, thus realizing the objective of producing a long (multi-decadal) time series of these products. The approach is based on the radiative transfer theory of canopy spectral invariants which facilitates parameterization of the canopy spectral bidirectional reflectance factor (BRF). The methodology permits decoupling of the structural and radiometric components and obeys the energy conservation law. The approach is applicable to any optical sensor, however, it requires selection of sensor-specific values of configurable parameters, namely, the single scattering albedo and data uncertainty. According to the theory of spectral invariants, the single scattering albedo is a function of the spatial scale, and thus, accounts for the variation in BRF with sensor spatial resolution. Likewise, the single scattering albedo accounts for the variation in spectral BRF with sensor bandwidths. The second adjustable parameter is data uncertainty, which accounts for varying information content of the remote sensing measurements, i.e., Normalized Difference Vegetation Index (NDVI, low information content), vs. spectral BRF (higher information content). Implementation of this approach indicates good consistency in LAI values retrieved from NDVI (AVHRRmode) and spectral BRF (MODIS-mode). Specific details of the implementation and evaluation of the derived products are detailed in the second part of this two-paper series.

Ganguly, Sangram↗

Techniques for the estimation of leaf area index using spectral data

Based on the radiative transport theory of a homogeneous canopy, a new approach for obtaining transformations of spectral data used to estimate leaf area index (LAI), is developed. The transformations which are obtained without any ground knowledge of LAI show low sensitivity to soil variability, and are linearly related to LAI with relationships which are predictable from leaf reflectance, transmittance properties, and canopy reflectance models. Evaluation of the SAIL (scattering by arbitrarily inclined leaves) model is considered. Using only nadir view data, results obtained on winter and spring wheat and corn crops are presented.

Badhwar, G. D.↗

Assimilating Remote Sensing Observations of Leaf Area Index and Soil Moisture for Wheat Yield Estimates: An Observing System Simulation Experiment

Observing system simulation experiments were used to investigate ensemble Bayesian state updating data assimilation of observations of leaf area index (LAI) and soil moisture (theta) for the purpose of improving single-season wheat yield estimates with the Decision Support System for Agrotechnology Transfer (DSSAT) CropSim-Ceres model. Assimilation was conducted in an energy-limited environment and a water-limited environment. Modeling uncertainty was prescribed to weather inputs, soil parameters and initial conditions, and cultivar parameters and through perturbations to model state transition equations. The ensemble Kalman filter and the sequential importance resampling filter were tested for the ability to attenuate effects of these types of uncertainty on yield estimates. LAI and theta observations were synthesized according to characteristics of existing remote sensing data, and effects of observation error were tested. Results indicate that the potential for assimilation to improve end-of-season yield estimates is low. Limitations are due to a lack of root zone soil moisture information, error in LAI observations, and a lack of correlation between leaf and grain growth.

Nearing, Grey S.↗

Comparison of measured C-band scattering coefficients with model predictions as a function of leaf area index and Biomass

The backscattering coefficients for black spruce and aspen at an incidence angle of 50 deg obtained using a helicopter mounted C-band scatterometer are related to leaf area index (LAI) and biomass for several dates while leaves are present. These data are compared with estimates obtained from the Fung disk model for aspen. Implications for spacecraft SAR (e.g., SIR-C) systems and their ability to determine biophysical characteristics of forest canopies are discussed. The precision of SAR data is insufficient to provide consistent tests of the relationship of LAI to the scattering coefficient for single polarizations alone. Backscatter models only provide a simulation of part of the canopy, and more attention needs to be placed on collecting field data which support tests of the microwave scattering models.

Pitts, D. E.↗

Assessment of the Broadleaf Crops Leaf Area Index Product from the Terra MODIS Instrument

The first significant processing of Terra MODIS data, called Collection 3, covered the period from November 2000 to December 2002. The Collection 3 leaf area index (LAI) and fraction vegetation absorbed photosynthetically active radiation (FPAR) products for broadleaf crops exhibited three anomalies (a) high LAI values during the peak growing season, (b) differences in LAI seasonality between the radiative transfer-based main algorithm and the vegetation index based back-up algorithm, and (c) too few retrievals from the main algorithm during the summer period when the crops are at full flush. The cause of these anomalies is a mismatch between reflectances modeled by the algorithm and MODIS measurements. Therefore, the Look-Up-Tables accompanying the algorithm were revised and implemented in Collection 4 processing. The main algorithm with the revised Look-Up-Tables generated retrievals for over 80% of the pixels with valid data. Retrievals from the back-up algorithm, although few, should be used with caution as they are generated from surface reflectances with high uncertainties.

Tan, Bin↗

Assimilation of Remotely Sensed Leaf Area Index Enhances the Estimation of Anthropogenic Irrigation Water Use

Representation of irrigation in Earth System Models has advanced over the past decade, yet large uncertainties persist in the effective simulation of irrigation practices, particularly over locations where the on-ground practices and climate impacts are less reliably known. Here we investigate the utility of assimilating remotely sensed vegetation data for improving irrigation water use and associated fluxes within a land surface model. We show that assimilating optical sensor-based leaf area index estimates significantly improves the simulation of irrigation water use when compared to the USGS ground reports. For heavily irrigated areas, assimilation improves the evaporative fluxes and gross primary production (GPP) simulations, with the median correlation increasing by 0.1–1.1 and 0.3–0.6, respectively, as compared to the reference datasets. Further, bias improvements in the range of 14–35 mm mo^(−1) and 10–82 g m^(-2)mo^(−1) are obtained in evaporative fluxes and GPP as a result of incorporating vegetation constraints, respectively. These results demonstrate that the use of remotely sensed vegetation data is an effective, observation-informed, globally applicable approach for simulating irrigation and characterizing its impacts on water and carbon states.

Earth System Models↗

The influence of assimilating leaf area index in a land surface model on global water fluxes and storages

Vegetation plays a fundamental role not only in theenergy and carbon cycles but also in the global water balanceby controlling surface evapotranspiration (ET). Thus, accu-rately estimating vegetation-related variables has the poten-tial to improve our understanding and estimation of the dy-namic interactions between the water, energy, and carbon cy-cles. This study aims to assess the extent to which a land sur-face model (LSM) can be optimized through the assimilationof leaf area index (LAI) observations at the global scale. Twoobserving system simulation experiments (OSSEs) are per-formed to evaluate the efficiency of assimilating LAI into anLSM through an ensemble Kalman filter (EnKF) to estimateLAI, ET, canopy-interception evaporation (CIE), canopy wa-ter storage (CWS), surface soil moisture (SSM), and terres-trial water storage (TWS). Results show that the LAI dataassimilation framework not only effectively reduces errorsin LAI model simulations but also improves all the modeledwater flux and storage variables considered in this study (ET,CIE, CWS, SSM, and TWS), even when the forcing pre-cipitation is strongly positively biased (extremely wet con-ditions). However, it tends to worsen some of the modeledwater-related variables (SSM and TWS) when the forcingprecipitation is affected by a dry bias. This is attributed tothe fact that the amount of water in the LSM is conservative,and the LAI assimilation introduces more vegetation, whichrequires more water than what is available within the soil

Terrestrial Vegetation↗

Remote Sensing of Seasonal Leaf Area Index Across the Oregon Transect

Remotely sensed data acquired from four remote-sensing instruments on three different aircraft platforms over a transect of coniferous forest stands in Oregon were analyzed with respect to seasonal leaf area index (LAI). Data from the four instruments were corrected for the varying seasonal and geographic atmospheric conditions present along the transect. Strong logarithmic relationships were observed between seasonal maximum and minimum LAI and the simple ratio (SR) (near infrared/red reflectance) calculated from the broad-spectral-band Thematic Mapper Simulator (TMS), as well as from the narrow-spectral-band Airborne Visible/Infrared Imaging Spectrometer (AVIRIS), the Compact Airborne Spectrographic Imager (CASI), and a Spectron SE590 spectro-radiometer (R(exp 2) = 0.82-0.97). The TMS SR reached an asymptote at an LAI of approx. 7-8. However, the SE590 and the CASI SR continued to increase up to the maximum LAI of 10.6. The variability of the relationship between the AVIRIS SR and LAI increased at stands with LAIs greater than 7, making a trend in the AVIRIS SR-LAI relationship at LAIs greater than 7 difficult to discern. The SRs of the coniferous forest stands measured by the narrow-spectral-band instruments were higher than they were from the broad-spectral-band TMS. This is attributed partially to the integration of the TMS over a broad wavelength region in the red and more strongly to calibration differences between the sensors. Seasonal TMS SR trends for four time periods for some of the stands deviated from the expected seasonal LAI trends, possibly because of smoke and very low sun angles during some of the acquisition periods. However, the expected SR differences for the seasonal minimum and maximum LAI were observed for all of the sensors for nearly all of the forest stands. This study, demonstrates that remotely, sensed data from both broad- and narrow spectral band instruments can provide estimates of LAI for use in forest ecosystems simulation models to estimate evapotranspiration, photosynthesis, canopy turnover, and net primary production over large areas.

Spanner, Michael↗

Analysis of Leaf Area Index and Fraction of PAR Absorbed by Vegetation Products from the Terra MODIS Sensor: 2000-2005

The analysis of two years of Collection 3 and five years of Collection 4 Terra Moderate Resolution Imaging Spectroradiometer (MODIS) Leaf Area Index (LAI) and Fraction of Photosynthetically Active Radiation (FPAR) data sets is presented in this article with the goal of understanding product quality with respect to version (Collection 3 versus 4), algorithm (main versus backup), snow (snow-free versus snow on the ground), and cloud (cloud-free versus cloudy) conditions. Retrievals from the main radiative transfer algorithm increased from 55% in Collection 3 to 67% in Collection 4 due to algorithm refinements and improved inputs. Anomalously high LAI/FPAR values observed in Collection 3 product in some vegetation types were corrected in Collection 4. The problem of reflectance saturation and too few main algorithm retrievals in broadleaf forests persisted in Collection 4. The spurious seasonality in needleleaf LAI/FPAR fields was traced to fewer reliable input data and retrievals during the boreal winter period. About 97% of the snow covered pixels were processed by the backup Normalized Difference Vegetation Index-based algorithm. Similarly, a majority of retrievals under cloudy conditions were obtained from the backup algorithm. For these reasons, the users are advised to consult the quality flags accompanying the LAI and FPAR product.

Yang, Wenze↗

Assessing soybean leaf area and leaf biomass by spectral measurements

Red and photographic infrared spectral radiances were correlated with soybean total leaf area index, green leaf area index, chlorotic leaf area index, green leaf biomass, chlorotic leaf biomass, and total biomass. The most significant correlations were found to exist between the IR/red radiance ratio data and green leaf area index and/or green leaf biomass (r squared equals 0.85 and 0.86, respectively). These findings demonstrate that remote sensing data can supply information basic to soybean canopy growth, development, and status by nondestructive determination of the green leaf area or green leaf biomass.

Holben, B. N.↗

Evaluation of satellite Leaf Area Index in California vineyards for improving water use estimation

Remote sensing estimation of evapotranspiration (ET) directly quantifies plant water consumption and provides essential information for irrigation scheduling, which is a pressing need for California vineyards as extreme droughts become more frequent. Many ET models take satellite-derived Leaf Area Index (LAI) as a major input, but how uncertainties of LAI estimations propagate to ET and the partitioning between evaporation and transpiration is poorly understood. Here we assessed six satellite-based LAI estimation approaches using Landsat and Sentinel-2 images against ground measurements from four vineyards in California and evaluated ET sensitivity to LAI in the thermal-based two-source energy balance (TSEB) model. We found that radiative transfer modeling-based approaches predicted low to medium LAI well, but they significantly underestimated high LAI in highly clumped vine canopies (RMSE ~ 0.97 to 1.27). Cubist regression models trained with ground LAI measurements from all vineyards achieved high accuracy (RMSE ~ 0.3 to 0.48), but these empirical models did not generalize well between sites. Red edge bands and the related vegetation index (VI) from the Sentinel-2 satellite contain complementary information of LAI to VIs based on near-infrared and red bands. TSEB ET was more sensitive to positive LAI biases than negative ones. Positive LAI errors of 50% resulted in up to 50% changes in ET, while negative biases of 50% in LAI caused less than 10% deviations in ET. However, even when ET changes were minimal, negative LAI errors of 50% led to up to a 40% reduction in modeled transpiration, as soil evaporation and plant transpiration responded to LAI change divergently. These findings call for careful consideration of satellite LAI uncertainties for ET modeling, especially for the partitioning of water loss between vine and soil or cover crop for effective vineyard irrigation management.

54 ENVIRONMENTAL SCIENCES↗

Microwave Backscatter and Attenuation Dependence of Leaf Area Index for Flooded Rice Fields

Wetlands are important for their role in global climate as a source of methane and other reduced trace gases. As part of an effort to determine whether radar is suitable for wetland vegetation monitoring, we have studied the dependence of microwave backscatter and attenuation on leaf area index (LAI) for flooded rice fields. We find that the radar return from a flooded rice field does show dependence on LAI. In particular, the C-band VV cross section per unit area decreases with increasing LAI. A simple model for scattering from rice fields is derived and fit to the observed HH and VV data. The model fit provides insight into the relation of backscatter to LAI and is also used to calculate the canopy path attenuation as a function of LAI.

Durden, Stephen L.↗

Selecting a spatial resolution for estimation of per-field green leaf area index

For any application of multispectral scanner (MSS) data, a user is faced with a number of choices concerning the characteristics of the data; one of these is their spatial resolution. A pilot study was undertaken to determine the spatial resolution that would be optimal for the per-field estimation of green leaf area index (GLAI) in grassland. By reference to empirically-derived data from three areas of grassland, the suitable spatial resolution was hypothesized to lie in the lower portion of a 2-18 m range. To estimate per-field GLAI, airborne MSS data were collected at spatial resolutions of 2 m, 5 m and 10 m. The highest accuracies of per-field GLAI estimation were achieved using MSS data with spatial resolutions of 2 m and 5 m.

Curran, Paul J.↗

Estimating Species-Specific Leaf Area Index and Basal Area Using Optical and SAR Remote Sensing Data in Acadian Mixed Spruce-Fir Forests, USA

This study combined Sentinel-1 synthetic aperture radar (SAR), Sentinel-2 multispectral, and site variable datasets to model leaf area index (LAI) and basal area per ha (BAPH) of two economically important tree species in Northeast, USA; red spruce (Picea rubens Sarg.; RS), and balsam fir (Abies balsamea (L.) Mill.; BF). We used Random Forest (RF), and Multi-Layer Perceptron (MLP) algorithms for LAI and BAPH modeling. The results showed that RF outperformed MLP by reducing the normalized root mean square error (nRMSE) by 0.01 and 0.06 for LAI and BAPH, respectively. The final variables selected for modeling of both LAI and BAPH indicated the superiority of Sentinel-2 variables over the Sentinel-1 SAR with minor contributions of site variables (mainly elevation). The red-edge spectral vegetation indices played a significant role in both LAI and BAPH estimation. We attained the lowest nRMSEs of 0.12, and 0.16 for the final LAI model of RS, and BF, respectively using Sentinel-2 and site variables. The lowest nRMSE for both RS and BF BAPH models was 0.12. As RS and BF are the primary host species for a cyclically occurring and most destructive pest of the region, eastern spruce budworm (Choristoneura fumiferana; SBW), these estimations will be useful to evaluate SBW dynamics in the region.

Forest inventory↗

Atmospheric effects on the remote sensing estimation of forest leaf area index

An analysis is presented of the magnitude and variability of the effect of the atmosphere on high-altitude Daedalus Airborne Thematic Mapper data. By regressing ATM radiances against ground radiances (from measurements by a helicopter-mounted Barnes Modular Multiband Radiometer), it was possible to account for atmospheric conditions and variability across a 250 km transect in Oregon to estimate coniferous forest leaf area index. The technique permitted scene contrast to be increased, providing an improved capability for measurement of ground feature radiance.

Spanner, M. A.↗

Estimation of canopy parameters for inhomogeneous vegetation canopies from reflectance data. II - Estimation of leaf area index and percentage of ground cover for row canopies

The canopy reflectance (CR) model for row-planted vegetation proposed earlier has been tested for soybean canopies in three different stages of growth and for corn canopies at early and full growth stages. The model fits the field-measured bidirectional CR data quite well. It is shown that, by inverting this model, one could estimate the leaf area index as well as the percentage of ground cover quite accurately from measured canopy reflectances.

Goel, N. S.↗

Assimilation of Remotely Sensed Leaf Area Index into the Noah-MP Land Surface Model: Impacts on Water and Carbon Fluxes and States over the Continental U.S.

Accurate representation of vegetation states is required for the modeling of terrestrial water-energy-carbon exchanges and the characterization of the impacts of natural and anthropogenic vegetation changes on the land surface. This study presents a comprehensive evaluation of the impact of assimilating remote sensing-based Leaf Area Index (LAI) retrievals over the Continental U.S. in the Noah-MP land surface model, during a time period of 2000 to 2017. The results demonstrate that the assimilation has a beneficial impact on the simulation of key water budget terms such as soil moisture, evapotranspiration, snow depth, terrestrial water storage and streamflow, when compared with a large suite of reference datasets. In addition, the assimilation of LAI is also found to improve the carbon fluxes of Gross Primary Production (GPP) and Net Ecosystem Exchange (NEE). Most prominent improvements in the water and carbon variables are observed over the agricultural areas of the U.S., where assimilation improves the representation of vegetation seasonality impacted by cropping schedules. The systematic, added improvements from assimilation in a configuration that employs high quality boundary conditions highlight the significant utility of LAI data assimilation in capturing the impacts of vegetation changes.

anthropogenic vegetation↗

Watershed Modeling with Remotely Sensed Big Data: MODIS Leaf Area Index Improves Hydrology and Water Quality Predictions

Traditional watershed modeling often overlooks the role of vegetation dynamics. There is also little quantitative evidence to suggest that increased physical realism of vegetation dynamics in process-based models improves hydrology and water quality predictions simultaneously. In this study, we applied a modified Soil and Water Assessment Tool (SWAT) to quantify the extent of improvements that the assimilation of remotely sensed Leaf Area Index (LAI) would convey to streamflow, soil moisture, and nitrate load simulations across a 16,860 km2 agricultural watershedin the midwestern United States. We modified the SWAT source code to automatically override the model’s built-in semiempirical LAI with spatially distributed and temporally continuous estimates from Moderate Resolution Imaging Spectroradiometer (MODIS). Compared to a “basic” traditional model with limited spatial information, our LAI assimilation model (i) significantly improved daily streamflow simulations during medium-to-low flow conditions, (ii) provided realistic spatial distributions of growing season soil moisture, and (iii) substantially reproduced the long-term observed variability of daily nitrate loads. Further analysis revealed that the overestimation or underestimation of LAI imparted a proportional cascading effect on how the model partitions hydrologic fluxes and nutrient pools. As such, assimilation of MODIS LAI data corrected the model’sLAI overestimation tendency, which led to a proportionally increased rootzone soil moisture and decreased plant nitrogen uptake. With these new findings, our study fills the existing knowledge gap regarding vegetation dynamics in watershed modeling and confirms that assimilation of MODIS LAI data in watershed models can effectively improve both hydrology and water quality predictions.

Adnan Rajib↗