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Results for “Molecular Probes”

Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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At least 55 records · Page 3
All sourcesNASA NTRSDOE OSTI
NASA NTRS2001

Molecular Dynamic Simulations of Interaction of an AFM Probe with the Surface of an SCN Sample

Molecular dynamic (MD) simulations is conducted in order to estimate forces of probe-substrate interaction in the Atomic Force Microscope (AFM). First a review of available molecular dynamic techniques is given. Implementation of MD simulation is based on an object-oriented code developed at the University of Delft. Modeling of the sample material - succinonitrile (SCN) - is based on the Lennard-Jones potentials. For the polystyrene probe an atomic interaction potential is used. Due to object-oriented structure of the code modification of an atomic interaction potential is straight forward. Calculation of melting temperature is used for validation of the code and of the interaction potentials. Various fitting parameters of the probe-substrate interaction potentials are considered, as potentials fitted to certain properties and temperature ranges may not be reliable for the others. This research provides theoretical foundation for an interpretation of actual measurements of an interaction forces using AFM.

Bune, Adris↗
NASA NTRS1981

New interstellar molecular transitions in the 2 millimeter range

A Sgr B2 kinetic temperature of about 47 K is derived based on observations of K components of the 9K-8K transition of CH3CCH. Interstellar line emission is detected in the 2 mm wavelength region from SO, (S-34)O, SO2, CH3OH, CH3CCH, CH3CH2CN, HC3N, and nine unidentified transitions. The methylacetylene K component data combined with the derived data reduction technique, demonstrates the utility of the molecule as a temperature probe of molecular clouds when two or more rotational transitions are observed. Evidence for the existence of interstellar HNO is presented, and an attempt is made to detect sulfuric acid, formic anhydride, and the 0-18 isotopic for CO2 in interstellar clouds and in the Venusian atmosphere during inferior conjunction.

Hollis, J. M.↗
NASA NTRS2023

ALMA Observations of Molecular Complexity in the Large Magellanic Cloud: Probing the Star-forming Region N 160

Hot molecular cores represent one of the earliest stages of high mass star formation, yet the number of known extragalactic hot cores is currently very small (six). A typical Galactic hot core found around a forming massive star is small, dense, hot, and it is rich in complex organic molecules (COMs; six or more atoms including carbon). In this presentation, we report the results of 1.2 mm continuum and molecular line single-pointing observations with the Atacama Large Millimeter/submillimeter Array (ALMA) of the field in the Large Magellanic Cloud (LMC) we dubbed N160A–mm. The goal of our study is to investigate the chemical complexity in this region and search for hot cores. The LMC is an ideal location for studying hot core chemistry in an environment distinctly different from the Milky Way due to its lower metallicity and strong UV radiation. N160A–mm is located in the star-forming region N160 south of 30 Doradus. It hosts two dominant young stellar objects and water (H2O), methanol (CH3OH), and hydroxyl (OH) masers, indicating ongoing star formation. We detect six 1.2 mm continuum sources, five of which are associated with the CH3OH emission peaks and/or extended emission. Methyl cyanide (CH3CN), another COM, is found towards the brightest continuum source in N160A–mm (N160A–mm A), and smaller molecules typically associated with Galactic hot cores (e.g., SO2, SO) are detected in four sources. Using spectral modeling, we estimate the rotational temperatures and column densities of the continuum sources. Based on the derived temperature of above 100 K, we identify N160–mm A as a hot core candidate. Most of the sources in N160A–mm exhibit a complex kinematic structure, providing evidence for large scale motions in the region (e.g., outflows, rotation). We compare the molecular abundances measured for N160-mm A to those found in Galactic hot cores and other LMC hot cores to investigate the impact of the environment on hot core chemistry.

Amanda Broadmeadow↗
NASA NTRS2005

Issues in the analysis of oligonucleotide tiling microarrays for transcript mapping

Traditional microarrays use probes complementary to known genes to quantitate the differential gene expression between two or more conditions. Genomic tiling microarray experiments differ in that probes that span a genomic region at regular intervals are used to detect the presence or absence of transcription. This difference means the same sets of biases and the methods for addressing them are unlikely to be relevant to both types of experiment. We introduce the informatics challenges arising in the analysis of tiling microarray experiments as open problems to the scientific community and present initial approaches for the analysis of this nascent technology.

Review↗
NASA NTRS1972

Electron paramagnetic resonance study of alinement induced by magnetic fields in two smectic-A liquid crystals not exhibiting nematic phases

Using vanadyl acetylacetonate (VAAC) as a paramagnetic probe, the molecular ordering in two smectic-A liquid crystals that do not display nematic phases were studied. Reproducible alinement was attained by slow cooling throughout the isotropic smectic-A transition in dc magnetic fields of 1.1 and 2.15 teslas. The degree of order attained is small for a smectic-A liquid crystal. Measurements were made of the variation of the average hyperfine splitting of the alined samples as a function of orientation relative to the dc magnetic field of the spectrometer. This functional dependence is in agreement with the theoretical prediction except where the viscosity of the liquid crystal becomes large enough to slow the tumbling of the VAAC, as indicated by asymmetry in the end lines of the spectrum.

Fryburg, G. C.↗
NASA NTRS1980

Laser spectroscopy of the CN radical and astrophysical applications

The formation of CN radicals by flash photolysis of a number of parent molecules was monitored by laser induced fluorescence in the B2Sigma(plus)-X2Sigma(plus) transition of CN. The rotational and vibrational energy of the newly formed radicals in the X state was measured directly. Formation of CN(A2Pi) in the lower vibrational levels was determined by an indirect method based on resonant energy transfer to higher vibrational levels of the ground state. These laboratory studies have shown that high initial internal excitation of CN with rotational levels of maximum N equals 50-70 is the rule. In general, the formation of simple molecules in excited states is commonly the case. There appear to be astrophysical systems where radiation from these excited levels may be detectable. Such observations would serve as a probe of molecular formation.

Cody, R. J.↗
NASA NTRS1988

Inverse gas chromatography. V - Computer simulation of diffusion processes on the column

The elution behavior of low molecular weight probes on inverse gas chromatography (IGC) columns is simulated using a computer. The IGC model is based on a polymer stationary phase of uniform thickness with a nonnegligible resitance to probe penetration. Three characteristic numbers are found to determine the whole process: Z(p) characterizing the distribution of the probe between phases, Z(f) describing the diffusion in the polymer phase, and Z(g) related to diffusion in the gaseous phase. For situations when Z(p)/Z(f) is less than 2, the standard evaluation procedures are virtually useless. The actual behavior of such systems is described.

Hattam, Paul↗
NASA NTRS1992

Slow-Positron Generator For Studying Polymer Films

Aspects of molecular structures probed by positron-annihilation spectroscopy (PAS). Slow-positron-beam generator suitable for PAS measurements in thin polymer films. Includes Na22 source of positrons and two moderators made of well-annealed tungsten foil. With proper choice of voltage, positrons emitted by inward-facing surfaces of moderators made to stop in polymer films tested.

Singh, Jag J.↗
NASA NTRS2000

Leonid Shower Probe of Aerothermochemistry in Meteoric Plasmas and Implication for the Origin of Life

The rarefied and high Mach number (up to 270) of the flow field of a typical meteoroid as it enters the Earth's atmosphere implies conditions of ablation and atmospheric chemistry that have proven to be as difficult to grasp as the proverbial shooting star. An airborne campaign was organized to study these processes during an intense Leonid shower. A probe of molecular band emission now demonstrates that the flash of light from a common meteor originates in the wake of the object rather than in the meteor head. A new theoretical approach using the direct simulation Monte Carlo technique demonstrates that the ablation process is critical in heating the air in that wake. Air molecules impinge on a dense cloud of ablated material in front of the meteoroid head into an extended wake that has the observed excitation temperatures. These processes determine what extraterrestrial materials may have been delivered to Earth at the time of the origin of life.

Jenniskens, Peter S. I.↗
NASA NTRS2000

Analysis of cell mechanics in single vinculin-deficient cells using a magnetic tweezer

A magnetic tweezer was constructed to apply controlled tensional forces (10 pN to greater than 1 nN) to transmembrane receptors via bound ligand-coated microbeadswhile optically measuring lateral bead displacements within individual cells. Use of this system with wild-type F9 embryonic carcinoma cells and cells from a vinculin knockout mouse F9 Vin (-/-) revealed much larger differences in the stiffness of the transmembrane integrin linkages to the cytoskeleton than previously reported using related techniques that measured average mechanical properties of large cell populations. The mechanical properties measured varied widely among cells, exhibiting an approximately log-normal distribution. The median lateral bead displacement was 2-fold larger in F9 Vin (-/-) cells compared to wild-type cells whereas the arithmetic mean displacement only increased by 37%. We conclude that vinculin serves a greater mechanical role in cells than previously reported and that this magnetic tweezer device may be useful for probing the molecular basis of cell mechanics within single cells. Copyright 2000 Academic Press.

Non-NASA Center↗
NASA NTRS1989

Primitive bodies - Molecular abundances in Comet Halley as probes of cometary formation environments

The most recent results on abundances of molecules in Halley's comet are examined in the context of various models for the environment in which comets formed. These environments include molecular clouds associated with star-forming regions, the solar nebula, gaseous disks around proto-planets, and combinations of these. Of all constituents in a cometary nucleus, the highly volatile molecules such as methane, ammonia, molecular nitrogen, and carbon monoxide are most sensitive to the final episode of cometary grain formation and incorporation in the comet's nucleus; hence they likely reflect at least some chemical processing in the solar nebula. Proper interpretation requires modeling of a number of physical processes including gas phase chemistry, chemistry on grain surfaces, and fractionation effects resulting from preferential incorporation of certain gases in proto-cometary grains. The abundance of methane in Halley's comet could be a key indicator of where that comet formed, provided the methane abundance on grains in star-forming regions can be observationally constrained.

Lunine, Jonathan I.↗
NASA NTRS1985

Turbulence in molecular clouds - A new diagnostic tool to probe their origin

A method is presented to uncover the instability responsible for the type of turbulence observed in molecular clouds and the value of the physical parameters of the 'placental medium' from which turbulence originated. The method utilizes the observational relation between velocities and sizes of molecular clouds, together with a recent model for large-scale turbulence (constructed by Canuto and Goldman, 1985).

Canuto, V. M.↗
NASA NTRS2002

Microgravity: Molecular Dynamics Simulations at the NCCS Probe the Behavior of Liquids in Low Gravity

The life of the very small, whether in something as complicated as a human cell or as simple as a drop of water, is of fundamental scientific interest: By knowing how a tiny amount of material reacts to changes in its environment, scientists maybe able to answer questions about how a bulk of material would react to comparable changes. NASA is in the forefront of computational research into a broad range of basic scientific questions about fluid dynamics and the nature of liquid boundary instability. For example, one important issue for the space program is how drops of water and other materials will behave in the low-gravity environment of space and how the low gravity will affect the transport and containment of these materials. Accurate prediction of this behavior is among the aims of a set of molecular dynamics experiments carried out on the NCCSs Cray supercomputers. In conventional computational studies of materials, matter is treated as continuous - a macroscopic whole without regard to its molecular parts - and the behavior patterns of the matter in various physical environments are studied using well-established differential equations and mathematical parameters based on physical properties such as compressibility density, heat capacity, and vapor pressure of the bulk material.

Source record↗
NASA NTRS1989

Fast molecular shocks. I - Reformation of molecules behind a dissociative shock

The physical and chemical processes that operate in the cooling gas behind a fast, dissociative, single-fluid shock propagating in a dense interstellar cloud are discussed. The treatment extends previous theoretical work on fast molecular shocks by including the effects of the conversion of Ly-alpha photons into radiation of the two-photon continuum and into H2 Lyman band emission lines, the effects of CO photodissociation following line absorption, and the formation and destruction of molecules containing the elements nitrogen, silicon, and sulphur, and of the complex hydrocarbons. Abundance profiles for the molecular species of interest are presented. After molecular hydrogen begins to reform, by means of gas phase and grain surface processes, the neutral species OH, H2O, O2, CO, CN, HCN, N2, NO, SO, and SiO reach substantial abundances. The molecular ions HeH(+), OH(+), SO(+), CH(+), H2(+), and H3(+), are produced while the gas is still hot and partially ionized. Emissions from them provide a possible diagnostic probe of fast molecular shocks.

Neufeld, David A.↗
NASA NTRS1991

Imaging Jupiter's aurorae from H3+ emissions in the 3-4 micrometers band

Since H3+ was first spectroscopically detected on Jupiter, there has been considerable interest in using this simple molecular ion to probe conditions existing in the planet's auroral regions. Here we present a series of images of Jupiter recorded at wavelengths sensitive to emission by H3+, which reveal the spatial distribution of excited H3+ molecular ions in the jovian ionosphere, as seen from Earth. We believe that they provide high-spatial-resolution images of polar aurorae on Jupiter. They suggest that the intensity of the auroral emission can vary on a timescale of an hour, a shorter period than had previously been noted. We also find that the spatial distribution of H3+ emissions correlates only partially with the loci of auroral activity inferred from ultraviolet and longer-wavelength infrared observations. The H3+ emission may therefore be controlled by auroral processes that are different from those responsible for the ultraviolet and infrared emissions.

Non-NASA Center↗
NASA NTRS2022

Physical and Chemical Conditions in the N113 Star-Forming Region in the Low-Metallicity Large Magellanic Cloud

The Large Magellanic Cloud (LMC) is the nearest (~50 kpc) star-forming galaxy characterized by a low metallicity (Z~0.3-0.5 Z⨀) similar to galaxies during the early phases of their assembly. As a result, star formation studies in the LMC provide a stepping stone to understanding star formation at earlier epochs of the universe where these processes cannot be directly observed. N113 is one of the most prominent star-forming regions in the LMC hosting one of the most massive giant molecular clouds.N113 is small enough to be imaged in its entirety, but large enough to showcase many important phenomena such as multiple generations of stars, stellar feedback, and different environments. We present our findings from an investigation of the early stages of star formation in the N113 region using the Atacama Large Millimeter/submillimeter Array (ALMA)molecular line data probing a wide density range: 12CO, 13CO, and C18O (2-1), 13COand C18O (1-0), HCN (1-0), HCO+ (1-0), H13CN (1-0) and (3-2), H13CO+ (1-0) and (3-2), CS (2-1) and (5-4), as well as 1.3 mm and 3 mm continuum. We used the Python package quick clump to identify molecular clumps. We utilized the multiline non-LTE fitting tool based on models from RADEX developed by Finn et al. (2021, ApJ, 917, 106)to construct the CO, HCN, HCO+, and CS temperature and column density, and the H2density maps of N113. We constructed a catalog of molecular clumps including their physical properties, chemical abundances, sizes, velocities, and velocity dispersions. To establish the evolutionary status of the clumps, their positions were compared with previously identified young stellar objects (YSOs) from the Spitzer/SAGE and Herschel/HERITAGE surveys, as well as water and OH masers. We compared the properties of the clumps in N113 to those in the Galaxy and other regions in the LMC to assess the impact of the environment (e.g., metallicity, stellar feedback) on the star formation process.

Jonathon Noswitz↗