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54 records · Page 3

AmeriFlux US-Bsg Burns Sagebrush

This is the AmeriFlux version of the carbon flux data for the site US-Bsg Burns Sagebrush. Site Description - The site was established in 2012 and is part of a NOAA observation network for high precision measurements of carbon dioxide concentrations. It is located about 60 km southwest of Burns, Oregon in the Oregon High Desert. The vegetation in this area is dominated by sagebrush. The sampling inlets are at the heights of 18.5, 28.5, and 38.5 m. Gas analysis is performed with a Picarro 2302 Cavity Ringdown Spectrometer and a Li-Cor 7200 enclosed path IRGA. The tower is also equipped with a set of meteorological instruments, including an HMP sensor, radiation sensors (incoming and diffuse PAR, Net radiometer), and a CSAT3 sonic anemometer. This site is also part of the PhenoCam network operated by Harvard University and the University of New Hampshire.

Still, Chris↗

AmeriFlux US-UC1 LTAR UCB (Upper Chesapeake Bay) EC1

This is the AmeriFlux version of the carbon flux data for the site US-UC1 LTAR UCB (Upper Chesapeake Bay) EC1. Site Description - Upper Chesapeake Bay farm is privately owned. The farming that took place was performed by the Farm Owner. The ground is rolling terrain, next to wooded areas, private resdiences and other large fields maintained by private land owners. At the time of this collection period, the site housed another Eddy Covariance System and a two Phenocams. Crop has been continuous corn with plans to rotate to alfalfa grass mixture.

Goslee, Sarah↗

AmeriFlux US-UC2 LTAR UCB (Upper Chesapeake Bay) EC2

This is the AmeriFlux version of the carbon flux data for the site US-UC2 LTAR UCB (Upper Chesapeake Bay) EC2. Site Description - Upper Chesapeake Bay farm is privately owned. The farming that took place was performed by the Farm Owner. The ground is rolling terrain, next to wooded areas, private resdiences and other large fields maintained by private land owners. At the time of this collection period, the site housed another Eddy Covariance System and a two Phenocams. Crop has been continuous corn with plans to rotate to alfalfa grass mixture.

Goslee, Sarah↗

AmeriFlux FLUXNET-1F US-HWB USDA ARS Pasture Sytems and Watershed Management Research Unit- Hawbecker Site

This is the AmeriFlux Management Project (AMP) created FLUXNET-1F version of the carbon flux data for the site US-HWB USDA ARS Pasture Sytems and Watershed Management Research Unit- Hawbecker Site. This is the FLUXNET version of the carbon flux data for the site US-HWB USDA ARS Pasture Sytems and Watershed Management Research Unit- Hawbecker Site produced by applying the standard ONEFlux (1F) software. Site Description - Hawbecker farm is owned by Penn State University. The farming that took place was performed by their Farm Operations Division. The ground is rolling terrain, next to wooded areas, the Beef and Sheep Reasearch Farm, The University Airport, and other large fields maintained by Farm Operations. At the time of this collection period, the site housed another Meteorological Site, a Phenocam, and the GraceNet plots. Crop Rotation during period was 2 years Alfalfa, 1 year Corn for grain and 1 year Wheat.

Goslee, Sarah↗

AmeriFlux FLUXNET-1F US-UC1 LTAR UCB (Upper Chesapeake Bay) EC1

This is the AmeriFlux Management Project (AMP) created FLUXNET-1F version of the carbon flux data for the site US-UC1 LTAR UCB (Upper Chesapeake Bay) EC1. This is the FLUXNET version of the carbon flux data for the site US-UC1 LTAR UCB (Upper Chesapeake Bay) EC1 produced by applying the standard ONEFlux (1F) software. Site Description - Upper Chesapeake Bay farm is privately owned. The farming that took place was performed by the Farm Owner. The ground is rolling terrain, next to wooded areas, private resdiences and other large fields maintained by private land owners. At the time of this collection period, the site housed another Eddy Covariance System and a two Phenocams. Crop has been continuous corn with plans to rotate to alfalfa grass mixture.

Goslee, Sarah↗

AmeriFlux FLUXNET-1F US-UC2 LTAR UCB (Upper Chesapeake Bay) EC2

This is the AmeriFlux Management Project (AMP) created FLUXNET-1F version of the carbon flux data for the site US-UC2 LTAR UCB (Upper Chesapeake Bay) EC2. This is the FLUXNET version of the carbon flux data for the site US-UC2 LTAR UCB (Upper Chesapeake Bay) EC2 produced by applying the standard ONEFlux (1F) software. Site Description - Upper Chesapeake Bay farm is privately owned. The farming that took place was performed by the Farm Owner. The ground is rolling terrain, next to wooded areas, private resdiences and other large fields maintained by private land owners. At the time of this collection period, the site housed another Eddy Covariance System and a two Phenocams. Crop has been continuous corn with plans to rotate to alfalfa grass mixture.

Goslee, Sarah↗

SPRUCE Experimental Plot Top View Aerial Images beginning June 2019

This data set provides a record of the aerial images of the SPRUCE experimental plots obtained periodically using an unmanned aerial vehicle (UAV) with attached camera from 2019-05-05- to 2022-08-25. New images of the plots will be added periodically. The initial RGB images may be used for studies of greenness and snow coverage and compared with ground-based measurements and chamber-based tree and shrub Phenocam images (e.g. Schädel et al., 2022). Also included are NDVI (Normalized Difference Vegetation Index) images showing calculated difference between visible near-infrared (NIR) light reflectance from vegetation, as well as infrared (IR) and multispectral images. Files are presented in JPEG (*.jpg) or PDF (*.pdf) format inside of 28 compressed (*.zip) files. Images were collected for the 10 plots with enclosures, the 7 unchambered plots, and the environmental monitoring instrument cluster area. Images are slightly off-plot center at 12 to 15 meters above ground level or approximately 2 meters above the top of an experimental chamber.

54 ENVIRONMENTAL SCIENCES↗

DeepPhenoMem V1.0: deep learning modelling of canopy greenness dynamics accounting for multi-variate meteorological memory effects on vegetation phenology

Abstract. Vegetation phenology plays a key role in controlling the seasonality of ecosystem processes that modulate carbon, water and energy fluxes between the biosphere and atmosphere. Accurate modelling of vegetation phenology in the interplay of Earth's surface and the atmosphere is thus crucial to understand how the coupled system will respond to and shape climatic changes. Phenology is controlled by meteorological conditions at different timescales: on the one hand, changes in key meteorological variables (temperature, water, radiation) can have immediate effects on the vegetation development; on the other hand, phenological changes can be driven by past environmental conditions, known as memory effects. However, the processes governing meteorological memory effects on phenology are not completely understood, resulting in their limited performance of vegetation phenology represented in land surface models. A deep learning model, specifically a long short-term memory network (LSTM), has the potential to capture and model the meteorological memory effects on vegetation phenology. Here, we apply the LSTM to model the vegetation phenology using meteorological drivers and high-temporal-resolution canopy greenness observations through digital repeat photography by the PhenoCam network. We compare a multiple linear regression model, a no-memory-effect LSTM model and a full-memory-effect LSTM model to predict the whole seasonal greenness trajectory and the corresponding phenological transition dates across 50 sites and 317 site years during 2009–2018, covering deciduous broadleaf forests, evergreen needleleaf forests and grasslands. Results show that the deep learning model outperforms the multiple linear regression model, and the full-memory-effect LSTM model performs better than the no-memory-effect model for all three plant function types (median R2 of 0.878, 0.957 and 0.955 for broadleaf forests, evergreen needleleaf forests and grasslands). We also find that the full-memory-effect LSTM model is capable of predicting the seasonal dynamic variations of canopy greenness and reproducing trends in shifting phenological transition dates. We also performed a sensitivity analysis of the full-memory-effect LSTM model to assess its plausibility, revealing its coherence with established knowledge of vegetation phenology sensitivity to meteorological conditions, particularly changes in temperature. Our study highlights that (1) multi-variate meteorological memory effects play a crucial role in vegetation phenology, and (2) deep learning opens up new avenues for improving the representation of vegetation phenological processes in land surface models via a hybrid modelling approach.

Geology↗

Vegetation Warming Experiment: Thaw depth and dGPS locations, Utqiagvik, Alaska, 2021

Thaw depth measurements within and around warming chambers, and in ambient plots located on the Barrow Environmental Observatory (BEO), Utqiagvik, Alaska. Measurements were taken at the start and end of chamber deployment, and two intermediate times during the 2021 growth season. dGPS measurements of chamber and ambient plot locations are also included. The files included in this data package are in .csv format, and include 2 data files and 3 metadata files. This data was recorded as part of the Zero Power Warming (ZPW) vegetation warming experiment. Other datasets under the Vegetation Warming Experiment include data for environmental conditions, leaf physiology, leaf traits, and landscape and plot phenocam images. The Next-Generation Ecosystem Experiments: Arctic (NGEE Arctic), was a research effort to reduce uncertainty in Earth System Models by developing a predictive understanding of carbon-rich Arctic ecosystems and feedbacks to climate. NGEE Arctic was supported by the Department of Energy's Office of Biological and Environmental Research. The NGEE Arctic project had two field research sites: 1) located within the Arctic polygonal tundra coastal region on the Barrow Environmental Observatory (BEO) and the North Slope near Utqiagvik (Barrow), Alaska and 2) multiple areas on the discontinuous permafrost region of the Seward Peninsula north of Nome, Alaska. Through observations, experiments, and synthesis with existing datasets, NGEE Arctic provided an enhanced knowledge base for multi-scale modeling and contributed to improved process representation at global pan-Arctic scales within the Department of Energy's Earth system Model (the Energy Exascale Earth System Model, or E3SM), and specifically within the E3SM Land Model component (ELM).

54 ENVIRONMENTAL SCIENCES↗

Vegetation Warming Experiment: Thaw depth and dGPS locations, Utqiagvik, Alaska, 2019

Thaw depth measurements within and around warming chambers, and in ambient plots located on the Barrow Environmental Observatory (BEO), Utqiagvik, Alaska. Measurements were taken at the start and end of chamber deployment, and two intermediate times during the 2019 growth season. dGPS measurements of chamber and ambient plot locations are also included. The files included in this data package are in .csv format, and include 3 data files and 3 metadata files. This data was recorded as part of the Zero Power Warming (ZPW) vegetation warming experiment. See related data files for environmental conditions, leaf physiology, leaf traits, and landscape and plot phenocam images. The Next-Generation Ecosystem Experiments: Arctic (NGEE Arctic), was a research effort to reduce uncertainty in Earth System Models by developing a predictive understanding of carbon-rich Arctic ecosystems and feedbacks to climate. NGEE Arctic was supported by the Department of Energy's Office of Biological and Environmental Research. The NGEE Arctic project had two field research sites: 1) located within the Arctic polygonal tundra coastal region on the Barrow Environmental Observatory (BEO) and the North Slope near Utqiagvik (Barrow), Alaska and 2) multiple areas on the discontinuous permafrost region of the Seward Peninsula north of Nome, Alaska. Through observations, experiments, and synthesis with existing datasets, NGEE Arctic provided an enhanced knowledge base for multi-scale modeling and contributed to improved process representation at global pan-Arctic scales within the Department of Energy's Earth system Model (the Energy Exascale Earth System Model, or E3SM), and specifically within the E3SM Land Model component (ELM).

54 ENVIRONMENTAL SCIENCES↗

Detecting Short Term Drought Impact in the Southwest US Using GOES-16 ABI Data

Satellite optical remote sensing has been often used for monitoring broad-region vegetation change, for example, phenology observations and the year-to-year leaf area index (LAI) responses to climate oscillations. However, rapid responses of vegetation to day-to-day weather perturbations are difficult to detect using available optical remote sensing satellites because of the low frequency of the observations. Sun-synchronous optical sensors, such as Moderate Resolution Imaging Spectroradiometer (MODIS) and Advanced Very High Resolution Radiometer (AVHRR), can observe a target area once a day. Daily observations cannot distinguish whether short-term changes in Normalized Differential Vegetation Index (NDVI) are actual LAI change or cloud contamination. NOAA’s GOES satellites make observations every 10 to 15 minutes using the Advanced Baseline Imager (ABI). In this study, we used the Geostationary-NASA Earth Exchange (GeoNEX) L1G Top-of-Atmosphere (TOA) ABI data to detect drought impact on NDVI time series in the Southwest US. We used an empirical method to cancel the BRDF effect of varying solar zenith angle. The ABI was able to detect short term drought impacts as well as an NDVI decrease in the dry season. Increased NDVI right after a rainfall followed by an immediate decrease was observed. These ABI NDVI changes were correlated with the RGB time series from PhenoCam Network data. Results indicated that the ABI can be used for short-term analysis of LAI and can detect small LAI changes caused by drought in an arid area, suggesting the potential for its use in near-real time drought monitoring applications.

ABI↗

Geostationary Satellite Observations Over Global Environmental Monitoring Sites

Globally, there are now hundreds of ground-based environmental monitoring stations routinely collecting data on a variety of earth-atmosphere interactions. Such observations are also being augmented with data from orbiting satellites. With the beginning of the EOS-era, the MODIS subset around flux towers has been frequently used for validating ecosystem models developed at flux towers and upscaling the observed flux data to regional scales. However, MODIS on the polar-orbiting satellites can observe target regions only once a day, while the Fluxnet eddy- covariance data are compiled as sub-hourly. Therefore, summarizing the sub-hourly flux data into daily statistics is necessary for the comparison between MODIS and Flux data. The new generation geostationary satellite sensors (GOES-16/17 ABI and Himawari-8/9 AHI) have capabilities similar to MODIS but collect data at 5-15 minute intervals. These high-frequency observations allow us to understand and scale diurnal fluxes. Some studies have already shown the effective utilization of time series of geostationary satellite data for ecosystem modeling. We are producing NEX Level-1G products, which are gridded Top-of-Atmosphere reflectance and brightness temperature data from geostationary satellite sensors. We cut out the NEX Level-1G data using the same file format with the MODIS subset except for the projection. The other data products (e.g., surface reflectance, land surface temperature, vegetation indices, and climate data) will be added upon their availability. Currently included networks are Fluxnet, PhenoCam, and AERONET. The NEX subset data will be provided through NASA NEX data portal.

Geostationary Satellites↗

GeoNEX-SUBSETS: Geostationary Satellite Observations Over International Observing Network Sites

Satellite remote sensing is crucial for monitoring the Earth’s surface and for simulating global carbon and water cycles. Subsets of satellite data from sensors such as MODIS over established observing networks have been valuable for researchers for comparing the ground observed phenomena with satellite observations. Here, we introduce new subsets of the GeoNEX geostationary satellite datasets over locations of several ground observation networks. The NASA Earth Exchange group has been generating geostationary satellite products with our international partners and universities to cover the entire globe. In comparison to polar-orbiting satellite sensors such as MODIS, the new generation geostationary satellites observe target areas at a higher frequency (5-10 minutes), which also significantly increased the data volume. To reduce the burden of downloading and extracting geostationary time series data and provide easy access to the community, we provide subsets of GeoNEX products through our data portal [www.data.nas.nasa.gov]. The ready-to-use subset follows the same format as the MODIS fixed sites subset tools for users who are familiar with MODIS subset data and software. The selected networks include Fluxnet, AERONET, and Phenocam over the conterminous US. We demonstrate the usage of the GeoNEX fixed-site subset data and showcase thir advantages with three example studies. The first example is simulating the diurnal cycle of plant ecophysiology at Fluxnet sites. The high frequency of the GeoNEX time series allows us to run ecological models at sub-hour time steps and directly compare the simulated carbon and water fluxes with half-hourly Fluxnet data. The second example uses the geostationary data to track phenological changes. It highlights the high-frequent observations of geostationary satellites in helping mask cloud covers and capture the quick responses of vegetation to environmental changes. As such, these examples demonstrate the value of ready-to-use GeoNEX subsets data in terrestrial ecophysiology research.

GeoNEX↗

GeoNEX-SUBSETS: Cutouts of geostationary satellite data over long-term monitoring sites

Satellite remote sensing data are important tool for extrapolating the knowledge obtained at the Fluxnet towers. We introduce our GEO-NEX geostationary satellite subset products, which make it easy to compare between ground observation and Geo-NEX products. The MODIS subset has been frequently used for validating ecosystem models developed at flux towers and upscaling the observed flux data to regional scales. However, MODIS on the polar orbiting satellites can observe target regions only once a day, while the Fluxnet eddy-covariance data are compiled as sub-hourly datasets. As a results, summarizing the sub-hourly flux data into daily statistics is necessary for the comparison between MODIS and Flux data. Here, the new generation geostationary satellite sensors (GOES-16/17 ABI and Himawari-8/9 AHI) has the high-frequent observation feature (10 minutes) in addition to similar spectral band and spatial resolution with MODIS. The high frequent observation allows us to compare the flux diurnal cycle with geostationary satellite sensor data. Some studies have already shown the effective utilization of time series of geostationary satellite data for ecosystem modeling. We are producing NEX Level-1G products, which is the gridded Top-of-Atmosphere reflectance and brightness temperature data of geostationary satellite sensors. We cut out the NEX Level-1G data using the same file format with the MODIS subset except for the projection. The other data products (e.g., surface reflectance, land surface temperature, vegetation indices and climate data) will be also added upon their availability. We selected the ground observation sites from Fluxnet, Phenocam, and AERONET networks. The NEX subset data will be provided through NASA NEX data portal.

GeoNEX↗

Mapping Temperate Forest Phenology Using Tower, UAV, and Ground-Based Sensors

Phenology is a distinct marker of the impacts of climate change on ecosystems. Accordingly, monitoring the spatiotemporal patterns of vegetation phenology is important to understand the changing Earth system. A wide range of sensors have been used to monitor vegetation phenology, including digital cameras with different viewing geometries mounted on various types of platforms. Sensor perspective, view-angle, and resolution can potentially impact estimates of phenology. We compared three different methods of remotely sensing vegetation phenology—an unoccupied aerial vehicle (UAV)-based, downward-facing RGB camera, a below-canopy, upward-facing hemispherical camera with blue (B), green (G), and near-infrared (NIR) bands, and a tower-based RGB PhenoCam, positioned at an oblique angle to the canopy—to estimate spring phenological transition towards canopy closure in a mixed-species temperate forest in central Virginia, USA. Our study had two objectives: (1) to compare the above- and below-canopy inference of canopy greenness (using green chromatic coordinate and normalized difference vegetation index) and canopy structural attributes (leaf area and gap fraction) by matching below-canopy hemispherical photos with high spatial resolution (0.03 m) UAV imagery, to find the appropriate spatial coverage and resolution for comparison; (2) to compare how UAV, ground-based, and tower-based imagery performed in estimating the timing of the spring phenological transition. We found that a spatial buffer of 20 m radius for UAV imagery is most closely comparable to below-canopy imagery in this system. Sensors and platforms agree within +/− 5 days of when canopy greenness stabilizes from the spring phenophase into the growing season. We show that pairing UAV imagery with tower-based observation platforms and plot-based observations for phenological studies (e.g., long-term monitoring, existing research networks, and permanent plots) has the potential to scale plot-based forest structural measures via UAV imagery, constrain uncertainty estimates around phenophases, and more robustly assess site heterogeneity.

Jeff W. Atkins↗

PS3: The Pheno-Synthesis software suite for integration and analysis of multi-scale, multi-platform phenological data

Phenology is the study of recurring plant and animal life-cycle stages which can be observed across spatial and temporal scales that span orders of magnitude (e.g., organisms to landscapes). The variety of scales at which phenological processes operate is reflected in the range of methods for collecting phenologically relevant data, and the programs focused on these collections. Consideration of the scale at which phenological observations are made, and the platform used for observation, is critical for the interpretation of phenological data and the application of these data to both research questions and land management objectives. However, there is currently little capacity to facilitate access, integration and analysis of cross-scale, multi-platform phenological data. This paper reports on a new suite of software and analysis tools – the “Pheno-Synthesis Software Suite,” or PS3 – to facilitate integration and analysis of phenological and ancillary data, enabling investigation and interpretation of phenological processes at scales ranging from organisms to landscapes and from days to decades. We use PS3 to investigate phenological processes in a semi-aride, mixed shrub-grass ecosystem, and find that the apparent importance of seasonal precipitation to vegetation activity (i.e., “greenness”) is affected by the scale and platform of observation. We end by describing potential applications of PS3 to phenological modeling and forecasting, understanding patterns and drivers of phenological activity in real-world ecosystems, and supporting agricultural and natural resource management and decision-making.

54 ENVIRONMENTAL SCIENCES↗

PiCAM: A Raspberry Pi-based open-source, low-power camera system for monitoring plant phenology in Arctic environments

Time-lapse cameras have been widely used as a tool to monitor the timing of seasonal vegetation growth. These simple, relatively inexpensive systems can provide high-frequency observations of leaf development and demography which are critical data sets needed to characterize plant phenology from species to landscapes. This is important for understanding how plants are responding to global changes, as well as for validating satellite-derived phenology products. However, in remote regions including the high-latitude Arctic, deploying time-lapse cameras could be challenging. The remoteness and lack of widespread power and telecommunications infrastructure limit options for the installation, maintenance and retrieval of data and equipment, and make it difficult for cameras to survive in extreme weather (e.g. long cold winters). To improve our understanding of Arctic phenology, new technologies are required to address these challenges. Here, we present a novel, low-power, compact, lightweight time-lapse camera system, called power-interval camera automation module (PiCAM). The PiCAM was designed with explicit consideration to simplify deployment (i.e. without a need for external power supplies) of camera systems and to address the challenges of camera survival in harsh Arctic environments. In this paper, we describe the design, setup and technical details of the PiCAM and provide a roadmap for how to build and operate these systems. As proof of concept, we deployed 26 PiCAMs at three low-Arctic tundra sites on the Seward Peninsula, Alaska in early August 2021 for characterizing Arctic plant phenology. Of the 26 PiCAMs, 70% remained active at the point of our revisit in late July 2022 despite the extreme winter temperatures they experienced (< –30°C, heavy snow cover). We extracted key plant phenology metrics from the PiCAMs and captured strong differences across key Arctic plant species. We showed that the PiCAM has the potential to be widely used for monitoring plant phenology across the broader Arctic region, addressing the need for ground-based understanding of Arctic phenological diversity to develop knowledge of plant response to climate change and to validate remote sensing products.

54 ENVIRONMENTAL SCIENCES↗

Impact of Shifts in Vegetation Phenology on the Carbon Balance of a Semiarid Sagebrush Ecosystem

Dryland ecosystems are critical in regulating the interannual variability of the global terrestrial carbon cycle. The responses of such ecosystems to weather and environmental conditions remain important factors that limit the accurate projections of carbon balance under future climate change. Here, we investigated how shifts in vegetation phenology resulting from changes in weather and environmental conditions influenced ecosystem carbon cycling in one semiarid ecosystem in the Hanford area of central Washington, United States. We examined two years of measurements of the phenology camera, eddy covariance, and soil chamber from an upland semiarid sagebrush ecosystem. Both years had contrasting diel and seasonal patterns of CO 2 fluxes, primarily driven by differences in vegetation phenology. The net ecosystem exchange of CO 2 (NEE) and evapotranspiration (ET) in 2019 were enlarged by shifted vegetation phenology, as a cold and snow-covered winter and warm and dry winter in 2020 resulted in constrained magnitudes of NEE and ET during the summer months. The annual gross primary productivity (GPP) was much higher in 2019 than in 2020 (-211 vs. -112 gC m -2 ), whereas ecosystem respiration was comparable in these two years (164 vs. 144 gC m -2 ). Thus, the annual NEE in 2019 was negative (-47 gC m -2 ) with the sagebrush ecosystem functioning as a carbon sink, while the positive annual NEE in 2020 indicated that the sagebrush ecosystem functioned as a carbon source. Our results demonstrate that winter snowpack can be a critical driver of annual carbon uptake in semiarid sagebrush ecosystems.

59 BASIC BIOLOGICAL SCIENCES↗