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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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At least 55 records · Page 3

Radiation breakage of DNA: a model based on random-walk chromatin structure

Monte Carlo computer software, called DNAbreak, has recently been developed to analyze observed non-random clustering of DNA double strand breaks in chromatin after exposure to densely ionizing radiation. The software models coarse-grained configurations of chromatin and radiation tracks, small-scale details being suppressed in order to obtain statistical results for larger scales, up to the size of a whole chromosome. We here give an analytic counterpart of the numerical model, useful for benchmarks, for elucidating the numerical results, for analyzing the assumptions of a more general but less mechanistic "randomly-located-clusters" formalism, and, potentially, for speeding up the calculations. The equations characterize multi-track DNA fragment-size distributions in terms of one-track action; an important step in extrapolating high-dose laboratory results to the much lower doses of main interest in environmental or occupational risk estimation. The approach can utilize the experimental information on DNA fragment-size distributions to draw inferences about large-scale chromatin geometry during cell-cycle interphase.

Chromatin/radiation effects↗

Development of Upscaling Techniques and Construction of Calibrated Models for Fractured Rocks Using Discrete Fracture Network Approaches

The Pahute Mesa Corrective Action Unit on the Nevada National Security Site (NNSS) contains several fractured aquifers that can potentially provide high-permeability pathways for radionuclides to migrate away from underground nuclear testing locations. Although the geometric properties of fractures, such as length and orientation, can be found using geophysical methods and borehole image analyses, the hydraulic property of fractures (which are primarily influenced by apertures) are often unknown or have a high degree of uncertainty attached to their values. The aperture values have a profound impact on groundwater velocity and are critical to understanding transport scales at Pahute Mesa. Fracture aperture values and their distributions also have dominant control over radionuclide transport with potential for long-range correlations or scale-invariant dynamics. Understanding of the small-scale transport variability in fractures could lead to identification of distinct characteristics on larger scales. Furthermore, upscaling techniques need to be developed to adequately predict transport behavior at field scales by capturing the transport trends of smaller scale networks. This report explores these vital modeling needs to understand the role of fractures in Pahute Mesa. Discrete fracture network (DFN) models are the basis for constructing a well-calibrated model to ascertain aperture values of fractures in lava-flow aquifers. These models are also used to develop and compare the usefulness of several random-walk-based models to perform transport upscaling.

54 ENVIRONMENTAL SCIENCES↗

Simulation of Inflated Pahoehoe Lava Flows

A new stochastic model simulates late-stage pahoehoe lobes where random processes dominate emplacement. The model prescribes probabilistic rules for determining where and when parcels of lava move within the lobe. Unlike a classical Brownian motion random walk, the model allows individual parcels to remain dormant, but fluid, for multiple time steps. The randomness of parcel volume transfers within the lobe interior as well as at the margins qualitatively reflects inflation processes observed in the field. The fraction of inflated volume to total volume increases with the total volume, with greater than 75% of the lobe volume contributed through inflation for typical lobes. The influence on planform shape and topographic cross-sectional profiles of total volume, source area and shape, topographic confinement, and sequential breakouts at the lobe margins, are all explored with the stochastic model. Each of these factors influences the overall lobe thickness and width. The model provides a means for assessing the relative importance of these processes through comparisons with field data. For the first time, Gaussian and parabolic functions are quantitatively fit to field measurements of pahoehoe lobes. Both functional forms provide adequate description of the cross-sectional flow shapes. When comparing simulated lobes to field data, sequential breakouts at the lobe margins are found to be an important process controlling the final topographic distribution of observed pahoehoe lobes.

modeling↗

Calculation of Dose Deposition in 3D Voxels by Heavy Ions and Simulation of gamma-H2AX Experiments

The biological response to high-LET radiation is different from low-LET radiation due to several factors, notably difference in energy deposition and formation of radiolytic species. Of particular importance in radiobiology is the formation of double-strand breaks (DSB), which can be detected by -H2AX foci experiments. These experiments has revealed important differences in the spatial distribution of DSB induced by low- and high-LET radiations [1,2]. To simulate -H2AX experiments, models based on amorphous track with radial dose are often combined with random walk chromosome models [3,4]. In this work, a new approach using the Monte-Carlo track structure code RITRACKS [5] and chromosome models have been used to simulate DSB formation. At first, RITRACKS have been used to simulate the irradiation of a cubic volume of 5 m by 1) 450 1H+ ions of 300 MeV (LET 0.3 keV/ m) and 2) by 1 56Fe26+ ion of 1 GeV/amu (LET 150 keV/ m). All energy deposition events are recorded to calculate dose in voxels of 20 m. The dose voxels are distributed randomly and scattered uniformly within the volume irradiated by low-LET radiation. Many differences are found in the spatial distribution of dose voxels for the 56Fe26+ ion. The track structure can be distinguished, and voxels with very high dose are found in the region corresponding to the track "core". These high-dose voxels are not found in the low-LET irradiation simulation and indicate clustered energy deposition, which may be responsible for complex DSB. In the second step, assuming that DSB will be found only in voxels where energy is deposited by the radiation, the intersection points between voxels with dose > 0 and simulated chromosomes were obtained. The spatial distribution of the intersection points is similar to -H2AX foci experiments. These preliminary results suggest that combining stochastic track structure and chromosome models could be a good approach to understand radiation-induced DSB and chromosome aberrations.

Plante, I.↗

Wang–Landau approach to the simulation of water clusters

The Wang–Landau Monte Carlo method [Wang FG, Landau DP. Efficient, multiple-range random walk algorithm to calculate the density of states. Phys Rev Lett. 2001;86:2050-2053; Determining the density of states for classical statistical models: a random walk algorithm to produce a flat histogram. Phys Rev E. 2001;64:056101] has been established as an effective computational approach for studying complex systems. In this study, we review the properties of 6 popular empirical water potentials, including a recently proposed explicit 3-body potential, obtained by applying the Wang–Landau method to the simulation of water clusters. Finally, comparing to numerous classical and first principle calculations, we show that several classical water models can provide a consistent description of the structural and thermodynamical properties of water clusters partially in agreement of ab initio results, although they were designed to reproduce macroscopic properties of water at ambient conditions.

74 ATOMIC AND MOLECULAR PHYSICS↗

The noise of BL Lacertae

Results are presented from an intensive optical and IR monitoring program of the flux and polarization characteristics of BL Lac. It is found that the polarization variations increase in amplitude with increasing time interval, and that the path traced out by the polarization vector in the Q-U plane is a random walk. In view of earlier measurements of BL Lac, the polarization fluctuations can be represented at low frequencies by the flat power spectrum of white noise, up to a frequency of 0.05 cycles/day. Above this frequency, the spectrum steepens to that of a random walk. A model for BL Lac suggested by the polarimetric noise can be constructed from independent sources of light with randomly oriented, strong polarization. Small random differences in spectral index from source to source could also explain the variable wavelength dependence of polarization.

Moore, R. L.↗

Effect of Turbulence Modeling on the Melt Flow and Inclusions Transport in a Steel Filtration Experiment

The current article deals with the effect of turbulence modeling on inclusions transport and melt flow in an induction crucible furnace (ICF), which was employed in order to investigate the efficiency and the performance of a ceramic filter. Furthermore, the influence of the discrete random-walk dispersion model on the behavior of inclusions in the ICF was investigated. Different turbulence models were employed in order to predict the turbulent melt flow. The numerical results show that the flow field is affected by the turbulence modeling method. Moreover, the distribution of the turbulent kinetic energy depends considerably on the choice of the turbulence model. In addition, the turbulence model and dispersion model also affect the inclusion transport in the melt. The filtration rate is also affected by the choice of the turbulence model.

36 MATERIALS SCIENCE↗

Upscaling of Regional Scale Transport Under Transient Conditions: Evaluation of the Multirate Mass Transfer Model

Abstract Regional scale transport models are needed to support the long‐term evaluation of groundwater quality and to develop management strategies aiming to prevent serious groundwater degradation. The purpose of this study is to evaluate the capacity of a previously developed upscaling approach to adequately describe the main solute transport processes, including the capture of late‐time tails under changing boundary conditions. Potential factors that impact the performance of upscaling methods, including temporal variations in mass transfer rates and mass distributions, were investigated. Advective‐dispersive contaminant transport in a 3‐D heterogeneous domain was simulated and used as a reference solution. The equivalent transport under homogeneous flow conditions was then evaluated by applying the multirate mass transfer (MRMT) model. The random walk particle tracking method was used to solve the solute transport for heterogeneous and homogeneous MRMT scenarios under steady state and transient conditions. The results indicate that the MRMT model can capture the tails satisfactorily for plumes transported with ambient steady state flow fields at all studied scales using the same parameters. However, when the boundary conditions change in either local, plume, or regional scale, the mass transfer model calibrated for transport under steady state conditions cannot accurately reproduce the tailings observed for the heterogeneous scenario. The deteriorating impacts of transient boundary conditions on the upscaled model are more significant for regions where the flow fields are dramatically affected, which highlights the poor applicability of the MRMT approach for complex field settings. This finding also has implications for the suitability of other potential upscaling approaches.

Guo, Zhilin↗

COWALKER:EFFECTIVE TRANSPORT PROPERTIES OF COMPOSITE MATERIALS

SF-23-026 This software computes effective transport properties of composite materials involving fibers and nanoparticles using a random-walk algorithm that efficiently scales to an arbitrary number of processes and cores. Effective transport properties (thermal, electrical) are key to bridge the microstructure of complex materials with its macroscopic behavior. Traditional approaches either use effective medium approximations (closed mathematical expressions that are approximation for certain conditions) or continuum simulation models such as finite element or finite volume, which require the generation of a mesh for each configuration explored. cowalker leverages the equivalence between laplacian or heat equation-based models and random walks to compute the asymptotic transport properties from an ensemble of first sojourn times of a random walker moving through the composite material. This allows us to directly define a composite material as a collection of particles and use algorithms developed for molecular dynamics to quickly compute the intersection of the walker with the different interfaces in the material. cowalker is developed in C++, and it relies on the GNU Scientific Library for random generation. cowalker is currently delivered as source code, so the GSL library is not included in cowalker's distribution. A more userfriendly version, cowalker.jl is currently in development and will be released as part of cowalker.

YANGUAS-GIL, ANGEL↗

Numerical Simulation of the Anomalous Transport of High-Energy Cosmic Rays in Galactic Superbubble

A continuous-time random-walk (CTRW) model to simulate the transport and acceleration of high-energy cosmic rays in galactic superbubbles has recently been put forward (Barghouty & Schnee 2102). The new model has been developed to simulate and highlight signatures of anomalous transport on particles' evolution and their spectra in a multi-shock, collective acceleration context. The superbubble is idealized as a heterogeneous region of particle sources and sinks bounded by a random surface. This work concentrates on the effects of the bubble's assumed astrophysical characteristics (cf. geometry and roughness) on the particles' spectra.

Barghouty, A. F.↗

A Finite Difference informed Random Walk solver for simulating radiation defect evolution in polycrystalline structures with strongly inhomogeneous diffusivity

Diffusivity of species and defects on grain boundaries is usually several orders of magnitude larger than that inside grains. Such strongly inhomogeneous diffusivity requires prohibitively high computational demands for modeling microstructural evolution. Here, this paper presents a highly-efficient numerical solver, combining the Finite Difference method and Random Walk model, designed for accurately modeling strongly inhomogeneous diffusion within polycrystalline structures. The proposed solver, termed Finite Difference informed Random Walk (FDiRW), integrates a customized Finite Difference (cFD) scheme tailored for fast diffusion along thin grain boundaries represented by a single-layer of nodes. Numerical experiments demonstrate that the FDiRW solver achieves an impressive efficiency gain of 1560x compared to traditional Finite Difference methods while maintaining accuracy, making it feasible for personal computer machines to handle diffusional systems with strongly inhomogeneous diffusivity across static polycrystalline microstructures. The model has been successfully applied to simulate radiation defect evolution, showcasing its scalability to engineering scales in both length and time dimensions.

36 MATERIALS SCIENCE↗

Optical variability of quasars with 20-yr photometric light curves

ABSTRACT We study the optical gri photometric variability of a sample of 190 quasars within the SDSS Stripe 82 region that have long-term photometric coverage during ∼1998−2020 with SDSS, PanSTARRS-1, the Dark Energy Survey, and dedicated follow-up monitoring with Blanco 4m/DECam. With on average ∼200 nightly epochs per quasar per filter band, we improve the parameter constraints from a Damped Random Walk (DRW) model fit to the light curves over previous studies with 10–15 yr baselines and ≲ 100 epochs. We find that the average damping time-scale τDRW continues to rise with increased baseline, reaching a median value of ∼750 d (g band) in the rest frame of these quasars using the 20-yr light curves. Some quasars may have gradual, long-term trends in their light curves, suggesting that either the DRW fit requires very long baselines to converge, or that the underlying variability is more complex than a single DRW process for these quasars. Using a subset of quasars with better-constrained τDRW (less than 20 per cent of the baseline), we confirm a weak wavelength dependence of τDRW∝λ0.51 ± 0.20. We further quantify optical variability of these quasars over days to decades time-scales using structure function (SF) and power spectrum density (PSD) analyses. The SF and PSD measurements qualitatively confirm the measured (hundreds of days) damping time-scales from the DRW fits. However, the ensemble PSD is steeper than that of a DRW on time-scales less than ∼ a month for these luminous quasars, and this second break point correlates with the longer DRW damping time-scale.

79 ASTRONOMY AND ASTROPHYSICS↗

OzDES Reverberation Mapping Programme: Mg ii lags and R − L relation

ABSTRACT The correlation between the broad line region radius and continuum luminosity (R–L relation) of active galactic nuclei (AGNs) is critical for single-epoch mass estimates of supermassive black holes (SMBHs). At z ∼ 1–2, where AGN activity peaks, the R–L relation is constrained by the reverberation mapping (RM) lags of the Mg ii line. We present 25 Mg ii lags from the Australian Dark Energy Survey RM project based on 6 yr of monitoring. We define quantitative criteria to select good lag measurements and verify their reliability with simulations based on both the damped random walk stochastic model and the rescaled, resampled versions of the observed light curves of local, well-measured AGN. Our sample significantly increases the number of Mg ii lags and extends the R–L relation to higher redshifts and luminosities. The relative iron line strength $\mathcal {R}_{\rm Fe}$ has little impact on the R–L relation. The best-fitting Mg iiR–L relation has a slope α = 0.39 ± 0.08 with an intrinsic scatter $\sigma _{\rm rl} = 0.15^{+0.03}_{-0.02}$ . The slope is consistent with previous measurements and shallower than the H β R–L relation. The intrinsic scatter of the new R–L relation is substantially smaller than previous studies and comparable to the intrinsic scatter of the H β R–L relation. Our new R–L relation will enable more precise single-epoch mass estimates and SMBH demographic studies at cosmic noon.

79 ASTRONOMY AND ASTROPHYSICS↗

The short-term prediction of universal time and length of day using atmospheric angular momentum

The ability to predict short-term variations in the Earth's rotation has gained importance in recent years owing to more precise spacecraft tracking requirements. Universal time (UT1), that component of the Earth's orientation corresponding to the rotation angle, can be measured by number of high-precision space geodetic techniques. A Kalman filter developed at the Jet Propulsion Laboratory (JPL) optimally combines these different data sets and generates a smoothed times series and a set of predictions for UT1, as well as for additional Earth orientation components. These UT1 predictions utilize an empirically derived random walk stochastic model for the length of the day (LOD) and require frequent and up-to-date measurements of either UT1 or LOD to keep errors from quickly accumulating. Recent studies have shown that LOD variations are correlated with changes in the Earth's axial atmospheric angular momentum (AAM) over timescales of several years down to as little as 8 days. AAM estimates and forecasts out to 10 days are routinely available from meteorological analysis centers; these data can supplement geodetic measurements to improve the short-term prediction of LOD and have therefore been incorporated as independent data types in the JPL Kalman filter. We find that AAM and, to a lesser extent, AAM forecast data are extremely helpful in generating accurate near-real-time estimates of UT1 and LOD and in improving short-term predictions of these quantities out to about 10 days.

Freedman, A. P.↗

Anomalous Transport of High Energy Cosmic Rays in Galactic Superbubbles

High-energy cosmic rays may exhibit anomalous transport as they traverse and are accelerated by a collection of supernovae explosions in a galactic superbubble. Signatures of this anomalous transport can show up in the particles' evolution and their spectra. In a continuous-time-random- walk (CTRW) model assuming standard diffusive shock acceleration theory (DSA) for each shock encounter, and where the superbubble (an OB stars association) is idealized as a heterogeneous region of particle sources and sinks, acceleration and transport in the superbubble can be shown to be sub-diffusive. While the sub-diffusive transport can be attributed to the stochastic nature of the acceleration time according to DSA theory, the spectral break appears to be an artifact of transport in a finite medium. These CTRW simulations point to a new and intriguing phenomenon associated with the statistical nature of collective acceleration of high energy cosmic rays in galactic superbubbles.

Barghouty, Nasser F.↗

Continuous-Time Multidimensional Walks as an Integrable Model

We consider continuous-time random walks on multidimensional symplectic lattices. It is shown that the generating functions of random walks and the transition amplitudes of continuous-time quantum walks can be expressed through dynamical correlation functions of an exactly solvable model describing strongly correlated bosons on a chain, the so-called phase model. The number of random lattice paths with a fixed number of steps connecting the starting and ending points on the multidimensional lattice is expressed through solutions of the Bethe equations of the phase model. Its asymptotics is obtained in the limit of a large number of steps.

97 MATHEMATICS AND COMPUTING↗

Searching for quasar candidates with periodic variations from the Zwicky Transient Facility: results and implications

ABSTRACT We conduct a systematic search for quasars with periodic variations from the archival photometric data of the Zwicky Transient Facility by cross-matching with the quasar catalogues of the Sloan Digital Sky Survey and Véron-Cetty and Véron. We first select out 184 primitive periodic candidates using the generalized Lomb–Scargle periodogram and autocorrelation function and then estimate their statistical significance of periodicity based on two red-noise models, i.e. damped random walk (DRW) and single power-law (SPL) models. As such, we finally identify 106 (DRW) and 86 (SPL) candidates with the most significant periodic variations out of 143 700 quasars. We further compare DRW and SPL models using Bayes factors, which indicate a relative preference of the SPL model for our primitive sample. We thus adopt the candidates identified with SPL as the final sample and summarize its basic properties. We extend the light curves of the selected candidates by supplying other archival survey data to verify their periodicity. However, only three candidates (with 6–8 cycles of periods) meet the selection criteria. This result clearly implies that, instead of being strictly periodic, the variability must be quasi-periodic or caused by stochastic red-noise. This exerts a challenge to the existing search approaches and calls for developing new effective methods.

Chen, Yong-Jie (ORCID:0000000342807673)↗

A test of the deadline model for speed-accuracy tradeoffs

Two experiments were conducted to evaluate the deadline model for speed-accuracy tradeoffs. According to the deadline model, participants in speeded-response tasks terminate stimulus discrimination as soon as it has run to completion or as soon as a predetermined time deadline has arrived, whichever comes first. Speed is traded for accuracy by varying the time deadlines; short deadlines yield fast but sometimes inaccurate responses, whereas long deadlines allow for slow, accurate responses. A new prediction of this model, based on a comparison of reaction time distributions, was derived and tested in experiments involving the joint manipulation of speed stress and stimulus discriminability. Clear violations of this prediction were observed when participants made relative brightness judgments (Experiment 1) and when they made lexical decisions (Experiment 2), rejecting both the deadline model and the fast-guess model. Several alternative models for speed-accuracy tradeoffs, including random-walk and accumulator models, are compatible with the results.

Discrimination (Psychology)↗