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At least 55 records · Page 3

Insights from 20 years of the Molecule of the Month

For 20 years, Molecule of the Month articles have highlighted the functional stories of 3D structures found in the Protein Data Bank (PDB). The PDB is the primary archive of atomic structures of biological molecules, currently providing open access to more than 150,000 structures studied by researchers around the world. The wealth of knowledge embodied in this resource is remarkable, with structures that allow exploration of nearly any biomolecular topic, including the basic science of genetic mechanisms, mechanisms of photosynthesis and bioenergetics, and central biomedical topics like cancer therapy and the fight against infectious disease. The central motivation behind the Molecule of the Month is to provide a user-friendly introduction to this rich body of data, charting a path for users to get started with finding and exploring the many available structures. The Molecule of the Month and related materials are updated regularly at the education portal PDB-101 (http://pdb101.rcsb.org/), offering an ongoing resource for molecular biology educators and students around the world.

59 BASIC BIOLOGICAL SCIENCES↗

Review of pulsed power-driven high energy density physics research on Z at Sandia

Pulsed power accelerators compress electrical energy in space and time to provide versatile experimental platforms for high energy density and inertial confinement fusion science. The 80-TW “Z” pulsed power facility at Sandia National Laboratories is the largest pulsed power device in the world today. Z discharges up to 22 MJ of energy stored in its capacitor banks into a current pulse that rises in 100 ns and peaks at a current as high as 30 MA in low-inductance cylindrical targets. Considerable progress has been made over the past 15 years in the use of pulsed power as a precision scientific tool. This paper reviews developments at Sandia in inertial confinement fusion, dynamic materials science, x-ray radiation science, and pulsed power engineering, with an emphasis on progress since a previous review of research on Z in Physics of Plasmas in 2005.

Sinars, D. B. (ORCID:0000000155473532)↗

Faster Finances

TRW has applied the Apollo checkout procedures to retail-store and bank-transaction systems, as well as to control systems for electric power transmission grids -- reducing the chance of power blackouts. Automatic checkout equipment for Apollo Spacecraft is one of the most complex computer systems in the world. Used to integrate extensive Apollo checkout procedures from manufacture to launch, it has spawned major advances in computer systems technology. Store and bank credit system has caused significant improvement in speed and accuracy of transactions, credit authorization, and inventory control. A similar computer service called "Validata" is used nationwide by airlines, airline ticket offices, car rental agencies, and hotels.

Source record↗

RCSB Protein Data Bank: supporting research and education worldwide through explorations of experimentally determined and computationally predicted atomic level 3D biostructures

The Protein Data Bank (PDB) was established as the first open-access digital data resource in biology and medicine in 1971 with seven X-ray crystal structures of proteins. Today, the PDB houses >210 000 experimentally determined, atomic level, 3D structures of proteins and nucleic acids as well as their complexes with one another and small molecules ( e.g. approved drugs, enzyme cofactors). These data provide insights into fundamental biology, biomedicine, bioenergy and biotechnology. They proved particularly important for understanding the SARS-CoV-2 global pandemic. The US-funded Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB) and other members of the Worldwide Protein Data Bank (wwPDB) partnership jointly manage the PDB archive and support >60 000 `data depositors' (structural biologists) around the world. wwPDB ensures the quality and integrity of the data in the ever-expanding PDB archive and supports global open access without limitations on data usage. The RCSB PDB research-focused web portal at https://www.rcsb.org/ (RCSB.org) supports millions of users worldwide, representing a broad range of expertise and interests. In addition to retrieving 3D structure data, PDB `data consumers' access comparative data and external annotations, such as information about disease-causing point mutations and genetic variations. RCSB.org also provides access to >1 000 000 computed structure models (CSMs) generated using artificial intelligence/machine-learning methods. To avoid doubt, the provenance and reliability of experimentally determined PDB structures and CSMs are identified. Related training materials are available to support users in their RCSB.org explorations.

59 BASIC BIOLOGICAL SCIENCES↗

High speed optical object recognition processor with massive holographic memory

Real-time object recognition using a compact grayscale optical correlator will be introduced. A holographic memory module for storing a large bank of optimum correlation filters, to accommodate the large data throughput rate needed for many real-world applications, has also been developed. System architecture of the optical processor and the holographic memory will be presented. Application examples of this object recognition technology will also be demonstrated.

512 X 512 grayscale optical correlator holographic↗

Powering the Blue Economy Foundational Research & Development Topics Reliability for Marine Energy Power Systems

Ocean observing platforms are deployed across the world’s oceans to collect meteorological and oceanographic data. Current technology makes use of solar panels and battery banks to provide power to these platforms, which can be challenging at high latitudes due to lack of solar insolation and cold temperatures. Marine renewable energy (MRE) generation offers a potential improvement in consistent power generation throughout the year for this use on ocean observation buoys. This report analyzes existing reliability of high latitude coastal weather buoys and tsunami detection buoys to determine performance standards that MRE generation sources must meet to become viable power sources for these remote systems. Using measurements recorded from the U.S. National Data Buoy Center’s coastal weather buoys and tsunami detection buoys, the analysis calculated the historic data availability – or the percentage of time a measurement is recorded – to evaluate the reliability of ocean observation buoys. The results show that coastal weather buoys operate at 74% data availability and the tsunami detection systems operate at an average 72% data availability. The results describe the total reliability of the system, including many different types of failures not associated with the power system such as mooring failures or equipment failures caused by extreme weather. Power system outages may only account for a small portion of the system failures. Reliability is an important design criterion for the power system of ocean observation platforms. Future power systems that would be designed for these buoys, such as an MRE generator, need to have a minimum reliability of 72% and 74% to meet the overall performance of the weather buoys and tsunami buoys, respectively. However, power system reliability likely needs to be much higher than overall system reliability, so that power system outages do not negatively impact the overall performance of the buoy.

42 ENGINEERING↗

PDB‐101: Molecular Explorations through Biology and Medicine

PDB‐101 is an online portal for teachers, students, and the general public to promote exploration of the structural biology of proteins and nucleic acids ( pdb101.rcsb.org ). Learning about the diverse shapes and functions of these biological macromolecules helps to understand all aspects of biomedicine and agriculture, from protein synthesis to health and disease to biological energy. Why PDB‐101? Researchers around the world are studying these molecules at the atomic level. These 3D structures are freely available at the Protein Data Bank (PDB), the central storehouse of biomolecular structures. This website builds introductory materials to help beginners get started in the basics of biomolecular structure and function (“101”, as in an entry level course) as well as resources for extended learning. Since 2011, PDB‐101 has been developed by the RCSB PDB , a global resource for the advancement of research and education in biology and medicine. Along with our Worldwide PDB collaborators, RCSB PDB curates, annotates, and makes publicly available the PDB data deposited by scientists around the globe. The RCSB PDB then provides a window to these data through a rich online resource with powerful searching, reporting, and visualization tools for researchers. This information is then streamlined for students and teachers at PDB‐101. Features include the ongoing Molecule of the Month series, educational materials such as paper models, posters, molecular animations, educational curricula and more. The section “Guide to Understanding PDB Data” is a primer for detailed PDB‐specific information: PDB Data, Visualizing Structures, Reading Coordinate Files, scientific methods for structure determination, and more. PDB‐101 also runs annual Video Challenges for high school students. Participants create short videos that tell molecular stories that connect structural biology and medicine. Previous topics have included HIV/AIDS, diabetes, and antimicrobial resistance. The 2022 challenge will focus on Molecular Mechanisms of Cancer. PDB‐101 activities are evaluated using user surveys, feedback from in‐person activities, and website analytics. In 2020, PDB‐101 hosted >850,000 users and >2.6 million page views.

Zardecki, Christine↗

LAMMR world data base documentation support and demonstrations

The primary purpose of the World Surface Map is to provide the LAMMR subsystem with world surface type classifications that are used to set up LAMMR LEVEL II process control. This data base will be accessed solely by the LAMMR subsystem. The SCATT and ALT subsystems will access the data base indirectly through the T sub b (Brightness Temperature) Data Bank, where the surface types were updated from a priori to current classification, and where the surface types were organized on an orbital subtrack basis. The single most important factor in the design of the World Surface Maps is the ease of access to the information while the complexity of generating these maps is of lesser importance because their generation is a one-time, off-line process. The World Surface Map provides storage of information with a resolution of 7 km necessary to set flags concerning the earth's features with a different set of maps for each month of the year.

Chin, R.↗

RCSB Protein Data Bank tools for 3D structure-guided cancer research: human papillomavirus (HPV) case study

Abstract Atomic-level three-dimensional (3D) structure data for biological macromolecules often prove critical to dissecting and understanding the precise mechanisms of action of cancer-related proteins and their diverse roles in oncogenic transformation, proliferation, and metastasis. They are also used extensively to identify potentially druggable targets and facilitate discovery and development of both small-molecule and biologic drugs that are today benefiting individuals diagnosed with cancer around the world. 3D structures of biomolecules (including proteins, DNA, RNA, and their complexes with one another, drugs, and other small molecules) are freely distributed by the open-access Protein Data Bank (PDB). This global data repository is used by millions of scientists and educators working in the areas of drug discovery, vaccine design, and biomedical and biotechnology research. The US Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB) provides an integrated portal to the PDB archive that streamlines access for millions of worldwide PDB data consumers worldwide. Herein, we review online resources made available free of charge by the RCSB PDB to basic and applied researchers, healthcare providers, educators and their students, patients and their families, and the curious public. We exemplify the value of understanding cancer-related proteins in 3D with a case study focused on human papillomavirus.

60 APPLIED LIFE SCIENCES↗

The Hydraulic and Electric Reverse Osmosis Wave Energy Converter (HERO WEC)

The Hydraulic and Electric Reverse Osmosis Wave Energy Converter (HERO WEC) is a 6-ft wave energy device that turns seawater into drinking water. It is designed for rapid deployment in disaster response scenarios where fresh water is limited. Featuring both hydraulic and electric power takeoff systems, HERO WEC has undergone two ocean deployments at Jennette's Pier on the Outer Banks of North Carolina in addition to extensive in-lab testing. The research provides practical insights into the real-world challenges of wave energy conversion beyond modeling and dry-lab environments. Attendees will develop an understanding of the practical considerations for deploying wave energy devices and the lessons learned from real-world HERO WEC deployments.

16 TIDAL AND WAVE POWER↗

Task 1: Water Depth Management, 1388

The author has identified the following significant results. ERTS-1 MSS data taken on October 10, 1972, of the Little Bahama Bank are being used to demonstrate the use of ERTS-1 data for mapping of shallow water features for the purpose of upgrading world navigation charts. Marked reflectance differences occur for the shallow water areas in bands 4, 5, and 6. Digital processing of two adjacent data tapes within the ERTS-1 frame covering an area of about 40 by 40 miles has been completed. Correlation of depth measurements to 5 meters has been successful. A mathematical model for depth measurements using ratio of voltages in band 4 and 5 has been successfully developed and is being tested for accuracy. Additional studies for areas near Puerto Rico and in northern Lake Michigan will be undertaken. Satellite data will also provide geographical evidence for verifying existence or nonexistence of doubtful shoal waters now appearing on world charts and considered to be hazardous to shipping.

Polcyn, F. C.↗

Calculations of water depth from ERTS-MSS data

ERTS-1 MSS data taken on October 10, 1972 of the Little Bahama Bank are being used to demonstrate the use of ERTS-1 data for mapping of shallow water features for the purpose of upgrading world navigation charts. Marked reflectance differences occur for the shallow water areas in Bands 4, 5, and 6. Digital processing of two adjacent data tapes within the ERTS frame covering an area of about 40 by 40 miles has been completed. Correlation of depth measurements to 5 meters has been successful. A mathematical model for depth measurements using ratio of voltages in Band 4 and 5 has been successfully developed and is being tested for accuracy. Additional studies for areas near Puerto Rico and in Northern Lake Michigan will be undertaken. Satellite data will also provide geographical evidence for verifying existence or nonexistence of doubtful shoal waters now appearing on world charts and considered to be hazardous to shipping.

Polcyn, F. C.↗

A 90GHz Bolometer Camera Detector System for the Green Bank Telescope

We describe a close-packed, two-dimensional imaging detector system for operation at 90GHz (3.3mm) for the 100 m Green Bank Telescope (GBT) This system will provide high sensitivity (<1mjy in 1s rapid imaging (15'x15' to 250 microJy in 1 hr) at the world's largest steerable aperture. The heart of this camera is an 8x8 close packed, Nyquist-sampled array of superconducting transition edge sensor bolometers. We have designed and are producing a functional superconducting bolometer array system using a monolithic planar architecture and high-speed multiplexed readout electronics. With an NEP of approx. 2.10(exp 17) W/square root Hz, the TES bolometers will provide fast linear sensitive response for high performance imaging. The detectors are read out by and 8x8 time domain SQUID multiplexer. A digital/analog electronics system has been designed to enable read out by SQUID multiplexers. First light for this instrument on the GBT is expected within a year.

Benford, Dominic J.↗

Integrated Stirling Convertor and Hall Thruster Test Conducted

An important aspect of implementing Stirling Radioisotope Generators on future NASA missions is the integration of the generator and controller with potential spacecraft loads. Some recent studies have indicated that the combination of Stirling Radioisotope Generators and electric propulsion devices offer significant trip time and payload fraction benefits for deep space missions. A test was devised to begin to understand the interactions between Stirling generators and electric thrusters. An electrically heated RG- 350 (350-W output) Stirling convertor, designed and built by Stirling Technology Company of Kennewick, Washington, under a NASA Small Business Innovation Research agreement, was coupled to a 300-W SPT-50 Hall-effect thruster built for NASA by the Moscow Aviation Institute (RIAME). The RG-350 and the SPT-50 shown, were installed in adjacent vacuum chamber ports at NASA Glenn Research Center's Electric Propulsion Laboratory, Vacuum Facility 8. The Stirling electrical controller interfaced directly with the Hall thruster power-processing unit, both of which were located outside of the vacuum chamber. The power-processing unit accepted the 48 Vdc output from the Stirling controller and distributed the power to all the loads of the SPT-50, including the magnets, keeper, heater, and discharge. On February 28, 2001, the Glenn test team successfully operated the Hall-effect thruster with the Stirling convertor. This is the world's first known test of a dynamic power source with electric propulsion. The RG-350 successfully managed the transition from the purely resistive load bank within the Stirling controller to the highly capacitive power-processing unit load. At the time of the demonstration, the Stirling convertor was operating at a hot temperature of 530 C and a cold temperature of -6 C. The linear alternator was producing approximately 250 W at 109 Vac, while the power-processing unit was drawing 175 W at 48 Vdc. The majority of power was delivered to the Hall thruster discharge circuit operating at 115 Vdc and 0.9 A. Testing planned for late 2001 will examine the possibility of directly driving the Hall thruster discharge circuit using rectified and filtered output from the Stirling alternator.

Mason, Lee S.↗

Numerical simulation of frost formation and heat transfer on fin-and-tube heat exchangers in turbulent cross-flow

Frost formation in fin-and-tube heat exchangers in turbulent cross-flow presents significant challenges in industrial refrigeration applications, affecting heat transfer efficiency and operational reliability. The purpose of this work is to investigate frost deposition and growth on a staggered bank of a fin-and-tube freezer coil under turbulent forced convection conditions. The focus here is on investigating conditions that closely replicate real-world scenarios in large walk-in industrial freezers. Using a direct numerical simulation approach, we examine the flow dynamics and thermal behaviour in the presence of frost, considering turbulent regimes characterized by a Reynolds number in the range 1050 ≤ R e D , avg ≤ 4800 , with the characteristic length being the outer diameter of the tube and the velocity being the bulk fluid velocity between the plates (fins). Computational fluid dynamics simulations are employed to resolve the interactions between turbulent airflow and the frost layer. Our approach incorporates a modified immersed boundary method and a slow-time acceleration technique to address the complex dynamic interface between the continuously evolving frost layer and the flowing air stream. Our findings indicate that frost forms more on the sides of the finned surfaces (plates) and less on the tubes themselves. This article is part of the theme issue ‘Heat and mass transfer in frost and ice’.

Science & Technology - Other Topics↗

A 90GHz Bolometer Camera Detector System for the Green

We describe a close-packed, two-dimensional imaging detector system for operation at 90GHz (3.3 mm) for the 100m Green Bank Telescope (GBT). This system will provide high sensitivity (less than 1mJy in 1s) rapid imaging (15'x15' to 150 micron Jy in 1 hr) at the world's largest steerable aperture. The heart of this camera is an 8x8 close-packed, Nyquist-sampled array of superconducting transition edge sensor (TES) bolometers. We have designed and are producing a functional superconducting bolometer array system using a monolithic planar architecture and high-speed multiplexed readout electronics. With an NEP of approximately 2 x 10(exp -17) W/square root of Hz, the TES bolometers will provide fast, linear, sensitive response for high performance imaging. The detectors are read out by an 8x8 time domain SQUID multiplexer. A digital/analog electronics system has been designed to enable read out by SQUID multiplexers. First light for this instrument on the GBT is expected within a year.

Benford, Dominic J.↗

Event Cause Analysis in Distribution Networks using Synchro Waveform Measurements

This paper presents a machine learning method for event cause analysis to enhance situational awareness in distribution networks. The data streams are captured using time-synchronized high sampling rates synchro waveform measurement units (SWMU). The proposed method is formulated based on a machine learning method, the convolutional neural network (CNN). This method is capable of capturing the spatiotemporal feature of the measurements effectively and perform the event cause analysis. Several events are considered in this paper to encompass a range of possible events in real distribution networks, including capacitor bank switching, transformer energization, fault, and high impedance fault (HIF). The dataset for our study is generated using the real time digital simulator (RTDS) to simulate real-world events. The event cause analysis is performed using only one cycle of the voltage waveforms after the event is detected. The simulation results show the effectiveness of the proposed machine learning-based method compared to the state-of-the-art classifiers.

Niazazari, Iman↗

Interactions with Virtual People: Do Avatars Dream of Digital Sheep?

This paper explores another form of artificial entity, ones without physical embodiment. We refer to virtual characters as the name for a type of interactive object that have become familiar in computer games and within virtual reality applications. We refer to these as avatars: three-dimensional graphical objects that are in more-or-less human form which can interact with humans. Sometimes such avatars will be representations of real-humans who are interacting together within a shared networked virtual environment, other times the representations will be of entirely computer generated characters. Unlike other authors, who reserve the term agent for entirely computer generated characters and avatars for virtual embodiments of real people; the same term here is used for both. This is because avatars and agents are on a continuum. The question is where does their behaviour originate? At the extremes the behaviour is either completely computer generated or comes only from tracking of a real person. However, not every aspect of a real person can be tracked every eyebrow move, every blink, every breath rather real tracking data would be supplemented by inferred behaviours which are programmed based on the available information as to what the real human is doing and her/his underlying emotional and psychological state. Hence there is always some programmed behaviour it is only a matter of how much. In any case the same underlying problem remains how can the human character be portrayed in such a manner that its actions are believable and have an impact on the real people with whom it interacts? This paper has three main parts. In the first part we will review some evidence that suggests that humans react with appropriate affect in their interactions with virtual human characters, or with other humans who are represented as avatars. This is so in spite of the fact that the representational fidelity is relatively low. Our evidence will be from the realm of psychotherapy, where virtual social situations are created that do test whether people react appropriately within these situations. We will also consider some experiments on face-to-face virtual communications between people in the same shared virtual environments. The second part will try to give some clues about why this might happen, taking into account modern theories of perception from neuroscience. The third part will include some speculations about the future developments of the relationship between people and virtual people. We will suggest that a more likely scenario than the world becoming populated by physically embodied virtual people (robots, androids) is that in the relatively near future we will interact more and more in our everyday lives with virtual people- bank managers, shop assistants, instructors, and so on. What is happening in the movies with computer graphic generated individuals and entire crowds may move into the space of everyday life.

Slater, Mel↗