Concurrent Prebiotic Formation of Nucleoside‐Amidophosphates and Nucleoside‐Triphosphates Potentiates Transition from Abiotic to Biotic Polymerization
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Huacan Lin↗
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Temporal variability in the importance of hydrologic, biotic, and climatic descriptors of dissolved oxygen dynamics in a shallow tidal‐marsh creek
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Natalie G. Nelson↗
Links between prey assemblages and poison frog toxins: A landscape ecology approach to assess how biotic interactions affect species phenotypes
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Ivan Prates↗
Magnetite: What it reveals about the origin of the banded iron formations
Magnetite, Fe3O4 is produced abiotically and biotically. Abiotically, magnetite is a late magmatic mineral and forms as a consequence of the cooling of iron rich magma. Biotically, magnetite is produced by several organisms, including magnetotactic bacteria. Hematite, Fe2O3, is also produced abiotically and biotically. Abiotically, hematite rarely occurs as a primary mineral in igneous rocks, but is common as an alteration product, fumarole deposit, and in some metamorphosed Fe-rich rocks. Biotically, hematite is produced by several types of microorganisms. Biologically-produced magnetite and hematite are formed under the control of the host organism, and consequently, have characteristics not found in abiotically produced magnetite and hematite crystals. To determine if the magnetite and hematite in the Banded Iron Formation was biologically or abiotically produced, the characteristics of biologically-produced magnetite and hematite (concentrated from Aquaspirillum magnetotacticum) and abiotically-produced magnetite and hematite obtained from Wards Scientific Supply Company, were compared with characteristics of magnetite and hematite concentrated from the Gunflint Banded Iron Formation (Ontario, Canada) using thermal and crystallographic analytical techniques. Whole rock analysis of the Gunflint Banded Iron Formation by x-ray diffraction (XRD) and differential thermal analysis (DTA) revealed the presence of quartz, hematite, siderite and dolomite as the major minerals, and magnetite, greenalite, pyrite, pyrrhotite and apatite as the minor minerals. Analysis of a crude magnetic fraction of the Gunflint showed the minerals quartz, hematite, siderite, dolomite, and magnetite. Analysis of the crude magnetic fraction from Aquaspirillum magnetotacticum revealed organic compounds plus hematite and magnetite. The mineral identification and particle size distribution data obtained from the DTA along with XRD data indicate that the magnetite and hematite from the Gunflint BIF share some similarities with biologically formed magnetite and hematite.
Schwartz, D. E.↗
Nearest-Neighbor Machine Learning Feature Selection for Interpretation of Microbial Molecular Signatures from Isotope Ratio Mass Spectrometry Data
Mass spectrometry (MS) promises to be a powerful tool for potential biosignature detection during astrobiological missions on ocean worlds in our solar system. Accurate and generalizable machine learning methods could enhance science return on investment by predicting seawater chemistry and classifying isotopic biosignatures, either as a signature consistent with microbial life (biotic) or as a novelty (unclassified/unique). However, machine learning models are likely to be complex and involve interactions between MS features, making biosignatures difficult to interpret. Feature selection methods provide biological and chemical context that help interpret the mechanisms of machine learning models, but these methods also need the ability to detect complex interactions. Previously, we developed a machine learning feature selection algorithm called nearest-neighbor projected distance regression (NPDR) that has the ability to identify important model features that involve complex interactions and automatically reduce correlation and the dimensionality in a high-dimensional variable space. The standard distance metrics used in NPDR – Manhattan and Euclidean – assume the multivariate data are isotropic, which is often violated in real data due to differences in the covariance between variables. Thus, we extend NPDR to include a random forest distance, and other anisotropic distance metrics, for computing nearest neighbors. We also augment the isotope-ratio MS data with time-series features from the raw MS signal to improve biotic classification. We test NPDR on our novel experimental ocean world seawater analog MS data. We measure isotope fractionations of volatile CO 2 that could be measured in exospheres or plumes. Samples include baseline abiotic conditions using a range of possible seawater chemistry consistent with Europa and Enceladus, and biotic samples that include microbes in these seawaters. We use penalized NPDR with random forest proximity to identify interpretable microbial molecular signatures. We compare features with random forest importance, and we train a classifier that discriminates between biotic and abiotic samples with high accuracy. These ML-trained ocean-world analog MS data could be used to assist in identifying biosignatures during future missions.
geochemistry↗
Global carbon - nitrogen - phosphorus cycle interactions: A key to solving the atmospheric CO2 balance problem?
If all biotic sinks of atmospheric CO2 reported were added a value of about 0.4 Gt C/yr would be found. For each category, a very high (non-conservative) estimate was used. This still does not provide a sufficient basis for achieving a balance between the sources and sinks of atmospheric CO2. The bulk of the discrepancy lies in a combination of errors in the major terms, the greatest being in a combination of errors in the major terms, the greatest being in the net biotic release and ocean uptake segments, but smaller errors or biases may exist in calculations of the rate of atmospheric CO2 increase and total fossil fuel use as well. The reason why biotic sinks are not capable of balancing the CO2 increase via nutrient-matching in the short-term is apparent from a comparison of the stoichiometry of the sources and sinks. The burning of fossil fuels and forest biomass releases much more CO2-carbon than is sequestered as organic carbon.
Peterson, B. J.↗
Strangelove ocean at era boundaries, terrestrial or extraterrestrial cause
Negative perturbations in carbon-isotope value of calcite in pelagic sediments were found at times of biotic crisis, marking horizons which are, or were proposed as era boundaries: Cretaceous/Tertiary (K/T), Permian/Triassic (P/T), and Precambrian/Cambrian (PreC/C). The anomaly was also found at several other mass-extinction horizons, such as terminal Ordovician, Frasnian-Famenian, etc. Studies of K/T boundary indicate that only the planktic fraction of the sediments has the negative isotope anomaly, whereas the benthic fraction has the same value across the boundary. This geochemical signal is thus considered a record of strangelove ocean, or an ocean where isotope fractionation of dissolved carbonate ions in surface waters (by biotic function of planktic organisms) has been significantly reduced because of the drastic reduction of the biomass in the oceans. The reduction of marine biomass at each of the era boundaries was related to chemical pollution of the oceans as a consequence of a catastrophic event; a pH decrease of 0.5 could inhibit the fertility of planktons. Studies of earthquakes, volcanic eruptions, and meteorite-impact occurrences have indicated a linearly inverse log/log relationship between the magnitude and frequency of events. The frequency of era boundaries in geologic history supports the postulate that the rare events causing those biotic crises were large bolide-impacts.
Hsue, Kenneth J.↗
Biogeography
As a field of study, biogeography may be considered a bricolage - it has been constructed from many different facets from an array of research disciplines including biology, botany, zoology, geography, and geology. Biogeography focuses on the study of the constantly changing ranges of plants and animals, over multitude of space and time scales. It also includes the study of the structure and dynamics of biotic communities and ecosystems as they relate to both natural and anthropogenic processes. As it exists today, biogeography is an interdisciplinary research area founded in both the biological and Earth sciences. From a purely biological perspective, biogeography may be perceived as one of two types of studies: 1. biotic distributions and broad scales, and interpretations of the evolutionary and dispersal history of a single taxon or a few taxa; or 2. biotic distributions at local-to-regional scales, and interpretations of these distributions in relation to contemporary environments and rates of immigration or extinction. The first type of study is what is most usually associated with the term "biogeography" as disciplinary research field. It is conventionally termed "classical biogeography" because it reflects the continuity of research foci on which biogeography was founded in the nineteenth-century. The second type of biogeographical study has more modern day roots and is termed "geographical ecology" to reflect the theoretical predilections of ecologists and population biologists. Geographical ecology for all intents has become merged with ecology and exists as a sub discipline within this larger field of study.
Quattrochi, Dale A.↗
Dissecting global diversity patterns: examples from the Ordovician Radiation
Although the history of life has been characterized by intermittent episodes of radiation that can be recognized in global compilations of biodiversity, it does not necessarily follow that these episodes are caused by processes that occurred uniformly around the world. Major diversity increases could be generated by the cumulative effects of different mechanisms operating simultaneously at several geographic or environmental scales. The purpose of this review is to describe ongoing research on the manifestations, at several scales, of the Ordovician Radiation, which was among the most extensive intervals of diversification in the history of life. Through much of the period, diversity was concentrated most heavily near regions of active mountain building and volcanism; differences in diversity patterns from continent to continent, and among regions within continents, reflect this overprint. While this suggests a linkage of the Radiation and tectonic activity, this is by no means the only mediating agent. Outcrop-based research in North America has demonstrated that tectonic activity was detrimental to some biotic elements, in contrast to its effects on other organisms. Moreover, in the Great Basin of North America where the local stratigraphic record is of particularly high quality, biotic transitions characteristic of the period occurred far more rapidly than observed in global compilations of diversity, suggesting that the global rate of transition may represent the aggregate sum of transitions that occurred abruptly, but at different times, around the world. Finally, it has been demonstrated that, in concert with an increase in average age, the environmental and geographic ranges of Ordovician genera both increased significantly through the period, indicating a role for intrinsic factors in producing Ordovician biotic patterns.
Non-NASA Center↗
Biomass of the cryptoendolithic microbiota from the Antarctic desert
Extractable lipid phosphate was used to determine the biomass of the cryptoendolithic microbiota that colonizes sandstone rocks in the Ross Desert region of Antarctica. The mean amount of lipid phosphate was 0.053 micromole/cm2 (n = 9), which equals 2.54 g of C per m2 (range, 1.92 to 3.26 g of C per m2) of biomass in the biotic zone of these rocks. The turnover of phospholipids was comparable to that of temperate sediments and soils (t1/2, 6 to 9 days) at 0 degrees C and a light intensity of 305 micromoles of photons per m2 per s, indicating that this was a good method to measure viable biomass. The biomass was 0.3 to 9.6% of the total carbon content of the biotic zone and was about 2 orders of magnitude smaller than the epilithic lichen dry weight at a location some 7 degrees north in latitude. The cryptoendolithic microbiota had a uniform density throughout the biotic zone under the rock surface. The results indicate that the cryptoendolithic microbial biomass is small but viable in this unique, extreme ecosystem.
NASA Discipline Exobiology↗
Squeezing Every Last 'Bit' of Information from Enceladus Mass Spectrometry
Potential opportunities to return to Enceladus in Discovery and Flagship class missions inspire development of next-generation instruments and creative approaches to sample collection, sample analysis, and data analysis and transmission strategies. Mass spectrometers (MS) are ideally suited to future Enceladus missions due to their analytical power in identifying a range of molecular and ionic compositions – including complex organics – and potentially astrobiologically-important features such as isotope ratios, chirality, and enantiomeric excess. However, long communication delays from Enceladus and limited bandwidth limits the data transmission from these higher-data-volume instruments, likely delaying mission-related response to new data. We explore the utility of data science and machine learning (ML) on isotope ratio (IR)MS data collected from laboratory analogs of Enceladus to: 1) process data quickly for rapid ground-based analyses, 2) understand if compositional and biosignature information could be extracted from IRMS data, and 3) evaluate whether onboard ML techniques could improve sample analysis, cadence, and transmission prioritization. Laboratory analogs analyzed isotopes of volatile CO2 that interacted with seawaters of varying composition, and include both abiotic and biotic (microbially-influenced) experiments. Enceladus’s alkaline oceans promote speciation of carbon into multiple forms (e.g., H2CO3 / CO2, HCO3-, and CO32-), each of which could be isotopically fractionated by abiotic or biotic reactions. Large (>2‰) changes in carbon isotopes (δ13C) are observed from some biotic experiments inoculated with complex microbial ecosystems relative to the abiotic seawaters. ML training and classification suggests that microbial samples can be distinguished from abiotic samples, yet that a broad range of microbial experiments are necessary to train ML models to cover a range of complexities including disequilibria, and isotopic and compositional fractionation.
geochemistry↗
Analysis of patterns of N-alkane distributions Final report
Distinguishing biotic material from non-biotic material
Hitchcock, D. R.↗
Controlled ecological life support system - biological problems
The general processes and controls associated with two distinct experimental paradigms are examined. Specific areas for research related to biotic production (food production) and biotic decomposition (waste management) are explored. The workshop discussions were directed toward Elemental cycles and the biological factors that affect the transformations of nutrients into food, of food material into waste, and of waste into nutrients were discussed. To focus on biological issues, the discussion assumed that (1) food production would be by biological means (thus excluding chemical synthesis), (2) energy would not be a limiting factor, and (3) engineering capacity for composition and leak rate would be adequate.
Moore, B., III↗
Inducement of heterochronic variation in a species of planktic foraminifera by a Late Eocene impact event
While it is well known that the cosmic impact event at or near the Cretaceous-Tertiary boundary coincides with an interval of mass extinction, a similar impact (or series of impacts) near the Eocene-Oligocene boundary presents a more complex picture, in terms of associated fluctuations in marine biotic diversity. Tektites, microtektites, and mineral grains exhibiting features of shock metamorphism found in Eocene sediments of the western N. Atlantic, Caribbean, and Gulf of Mexico (comprising the North American microtektite strewn field) offer compelling evidence for a catastrophic impact event. Despite the magnitude of this event, however, few extinctions in the planktic marine fauna are known to have occurred coincident with this event. Instead, changes in relative abundance, morphology, and development occurred. Cosmic impacts generally have been interpreted as influencing the course of evolution through the wholesale elimination of significant portions of standing biotic diversity. Indeed, extinction traditionally has been viewed as the negative side of evolution. In some instances, it is suggested such impact events can serve instead to increase, rather than decrease, morphological and ecological diversity, by altering the developmental programs within species at the level of the local population.
Macleod, N.↗
Evidence of volcanic ash at a K-T boundary section: Ocean drilling program hole 690 C, Maud Rise, Weddell Sea off East Antarctica
Rare vitric volcanogenic ash but more abundant clay minerals considered volcanogenic in origin are associated with an expanded and essentially complete K-T boundary sequence from Ocean Drilling Project (ODP) Hole 690 C on Maud Rise in the Weddell Sea off East Antarctica. Results at this writing are preliminary and are still based to some extent on shipboard descriptions. Further shore-based studies are in progress. It would appear, however, that the presence of volcanic ash and altered ash in the Danian section beginning at the biostratigraphically and paleomagnetically determined K-T boundary on Maud Rise can be cited as evidence of significant volcanic activity within the South Atlantic-Indian Ocean sector of the Southern Ocean coincident with the time of biotic crises at the end of the Maestrichtian. This is a postulated time of tectonic and volcanic activity within this Southern Hemisphere region, including possible initiation of the Reunion hot spot and a peak in explosive volcanism on Walvis Ridge (1) among other events. A causal relationship with the biotic crisis is possible and volcanism should be given serious consideration as a testable working hypothesis to explain these extinctions.
Wise, S. W.↗
An evaluation of criteria that may be used to identify species surviving a mass extinction
One of the most difficult obstacles to establishing a causal connection between mass extinctions and large body impacts is the existence of what appear to be many more KT survivor species than previously suspected. Though interpretations of 'Cretaceous' faunal elements in lowermost Danian sediments differ, this enigmatic fauna has not been recovered from every biozone-complete boundary section, including the El Kef stratotype. In terms of their potential for providing constraints on scenarios seeking to account for the KT extinction event, the significance of such observations cannot be overstated. Owing to the consistency with which these observations have been made over the last several years, the possibility of widespread trans-KT biotic survivorship can no longer be dismissed. Rather, the survivorship hypothesis must be tested alongside its alternative (the reworking hypothesis) to determine which explains the available data in the most complete yet parsimonious manner. Moreover, valid tests for survivorship cannot be based on negative evidence or on the assumption that only a small cohort of species could have survived the KT boundary event. Several authors have recently proposed various criteria that might be used to test alternative interpretations for this aspect lowermost Danian biotic record.
Macleod, N.↗
Self-organization of the earth's biosphere-geochemical or geophysiological?
We explore the implications of indicating the biosphere's self-organization by the trend over time of the net entropic flow from the Earth's surface, the actual physical boundary of virtually all biotic mass. This flow, derived from the radiative surface entropy budget, is approximately inversely related to the surface temperature when the solar incident flux remains constant. In the geophysiological ('gaian') interpretation, biospheric self-organization has increased with the progressive colonization of the continents and evolutionary developments in the land biota, as a result of surface cooling arising from biotic enhancement of weathering. The key site for this self-organization is at the interface between land and atmosphere, the soil, where carbon is sequestered by its reaction (as carbonic and organic acids) with calcium magnesium silicates. Along with disequilibrium (steady-state) levels of carbon dioxide in the atmosphere, the occurrence of differentiated soil is the critical material evidence for biospheric self-organization, whether it be geophysiological or geochemical (ie., purely result of inorganic reactions). The computed equilibrium levels of carbon dioxide and corresponding equilibrium temperatures in the past are dramatically different from the steady-state levels. With future solar luminosity increase, the biospheric capacity for climatic regulation will decrease, leading to the ending of self-organization some two billion years from now. The Earth's surface will then approach chemical equilibrium with respect to the carbonate-silicate cycle.
Schwartzman, David W.↗
Bridging Two Worlds: From the Archean to the Proterozoic
As now known, the Archean and Proterozoic appear to have been different worlds: the geology (tectonic style, basinal distribution, dominant rock types), atmospheric composition (O2, CO21, CH4), and surface environment (day-length, solar luminosity, ambient temperature) all appear to have changed over time. And virtually all paleobiologic indicators can be interpreted as suggesting there were significant biotic differences as well: (1) Stromatolites older than 2.5 Ga are rare relative to those of the Proterozoic; their biotic components are largely unknown; and the biogenicity of those older than approx. 3.2 Ga has been questioned. (2) Bona fide microfossils older than approx. 2.4 Ga are rare, poorly preserved, and of uncertain biological relations. Gaps of hundreds of millions of years in the known record make it impossible to show that Archean microorganisms are definitely part of the 2.4 Ga-to-present evolutionary continuum. and (3) In rocks older than approx. 2.2 Ga, the sulfur isotopic record is subject to controversy; phylogenetically distinctive bio-markers are unknown; and nearly a score of geologic units contain organic carbon anomalously light isotopically (relative to that of the Proterozoic and Phanerozoic) that may reflect the presence of Archaeans ("Archaebacteria of earlier classifications) but may not (since cellularly preserved Archean-age Archaeans have never been identified).
Schopf, J. William↗