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At least 55 records · Page 3

Determining density of maize canopy. 3: Temporal considerations

Multispectral scanner data were collected in two flights over ground cover plots at an altitude of 305 m. Eight ground reflectance panels in close proximity to the ground cover plots were used to normalize the scanner data obtained on different dates. Separate prediction equations were obtained for both flight dates for all eleven reflective wavelength bands of the multispectral scanner. Ratios of normalized scanner data were related to leaf area index over time. Normalized scanner data were used to plot relative reflectance versus wavelength for the ground cover plots. Spectral response curves were similar to those for bare soil and green vegetation as determined by laboratory measurements. The spectral response curves from the normalized scanner data indicated that reflectance in the 0.72 to 1.3 micron wavelength range increased as leaf area index increased. A decrease in reflectance was observed in the 0.65 micron chlorophyll absorption band as leaf area index increased.

Stoner, E. R.↗

A Passive Method for Detecting Vegetation Stress from Orbit: Chlorophyll Fluorescence Spectra from Fraunhofer Lines

Solar-stimulated chlorophyll fluorescence measured with the Fraunhofer line depth method has correlated well with vegetation stress in previous studies. However, the instruments used in those studies were limited to a single solar absorption line (e.g. 656.3 nm), obviating the red/far-red ratio (R/FR) method. Optics and detector technology have reached the level whereby multiple, very narrow Fraunhofer lines are resolvable. Thirteen such lines span the visible spectrum in the red to far-red region where chlorophyll fluorescence occurs. Fluorescence intensities at the 13 Fraunhofer line wavelengths were used to model emission spectra. The source data were collected for summer and fall bean crops (Phaseolus vulgaris L.) subjected to various levels of nitrogen fertilization. The intensities were adjusted to account for Fraunhofer line depth and atmospheric transmittance. Multiple R/FR fluorescence ratios, calculated from the modeled fluorescence spectra, correlated strongly with leaf chlorophyll concentration and well with applied nitrogen. The ratio yielding the best correlation with chlorophyll utilized red fluorescence at the 694.5 nm Fraunhofer line and farred fluorescence at the 755.6 nm Fraunhofer line. Twenty R/FR ratios, each evaluated for the maximum differential between low and high (optimal) nitrogen treatments, ranked higher in some cases and lower in others, possibly related to the time of year the crops were grown and the stage of growth of the crops. Ratios with 728.9 nm and 738.9 nm in the denominator consistently ranked in the lowest and next lowest quartile, respectively. Ratios of the 656.3 nm Fraunhofer line and the 755.6 nm line consistently ranked highest for the summer crop. Ratios with 755.6 nm in the denominator ranked in the upper quartile for 10 out of 12 measurement dates. Differences in ratio ranking indicate that physiological conditions may be estimated using selected ratios of Fraunhofer lines within the context of R/FR analysis. A passive instrument designed to monitor R/FR chlorophyll fluorescence (i.e. vegetation stress) from orbit could be built today.

Theisen, Arnold F.↗

Response of Grape Leaf Spectra to Phylloxera Infestation

During the 1993 growing season, leaf reflectance and chlorophyll concentrations were monitored with respect to phylloxera (root-louse) infestation in a Napa Valley (California) vineyard. Study plots were established in areas of severely infested, mildly infested, and uninfested sections of the vineyard. A handheld chlorophyll meter, measuring leaf transmittance of near-infrared and red light, confirmed that reduced foliar chlorophyll concentrations were symptomatic of phylloxera stress in the sample vines. Bidirectional reflectance measurements of green and near-infrared light, taken on fresh leaves with a laboratory spectrophotometer, were related to chlorophyll concentration but did not allow discrimination of mildly infested from uninfested vines.

Johnson, Lee F.↗

The current status of airborne laser fluorosensing

Airborne laser fluorosensors have been used to identify and quantify specific substances in the aquatic environment. It has been shown that the sensor can identify and classify oil films. If the extinction coefficient is known then the thickness of thinner films (less than 20 micrometers) may be calculated. The intensity of the water Raman signal is proportional to the water volume sampled by the sensor and hence an effective attenuation coefficient for the water can be calculated. The same Raman measurement provides the normalization necessary to map chlorophyll and dye concentrations using the intensity of their respective fluorescence signatures.

Oneil, R. A.↗

Relationship between vegetation reflectance spectra and soil geochemistry: New data from Catheart Mountain, Maine

Spectral reflectance curves for red spruce and balsam fir in the 350- to 1100-nanometer region showed differences between specimens growing over and away from a concealed copper deposit at Catheart Mountain, Maine. A sample group of 15 anomalous spruce, 9 background spruce, 10 anomalous fir, and 10 background fir was studied. Measurements of copper and molybdenum contents in the supporting soil were used to categorize the trees as anomalous or background. Analyses using parametric and nonparametric statistical tests were performed to establish whether significant differences existed between the anomalous and background groups. At the 95% confidence level, significant differences were found to exist for both species, generally in the chlorophyll band centered at about 550 nanometers and in the region from 700 to 900 nanometers.

Canney, F. C.↗

Expanded Signal to Noise Ratio Estimates for Validating Next-Generation Satellite Sensors in Oceanic, Coastal, and Inland Waters

The launch of the NASA Plankton, Aerosol, Cloud, ocean Ecosystem (PACE) and the Surface Biology and Geology (SBG) satellite sensors will provide increased spectral resolution compared to existing platforms. These new sensors will require robust calibration and validation datasets, but existing field-based instrumentation is limited in its availability and potential for geographic coverage, particularly for coastal and inland waters, where optical complexity is substantially greater than in the open ocean. The minimum signal-to-noise ratio (SNR) is an important metric for assessing the reliability of derived biogeochemical products and their subsequent use as proxies, such as for biomass, in aquatic systems. The SNR can provide insight into whether legacy sensors can be used for algorithm development as well as calibration and validation activities for next-generation platforms. We extend our previous evaluation of SNR and associated uncertainties for representative coastal and inland targets to include the imaging sensors PRISM and AVIRIS-NG, the airborne-deployed C-AIR radiometers, and the shipboard HydroRad and HyperSAS radiometers, which were not included in the original analysis. Nearly all the assessed hyperspectral sensors fail to meet proposed criteria for SNR or uncertainty in remote sensing reflectance (R rs ) for some part of the spectrum, with the most common failures (>20% uncertainty) below 400 nm, but all the sensors were below the proposed 17.5% uncertainty for derived chlorophyll-a. Instrument suites for both in-water and airborne platforms that are capable of exceeding all the proposed thresholds for SNR and R rs uncertainty are commercially available. Thus, there is a straightforward path to obtaining calibration and validation data for current and next-generation sensors, but the availability of suitable high spectral resolution sensors is limited.

signal-to-noise ratio↗

Beyond green with synthetic chlorophylls – Connecting structural features with spectral properties

The distinct features of chlorophylls in photosynthesis have led to the formation of numerous derivatives for applications encompassing solar energy conversion, molecular photonics, photodynamic therapy, and molecular imaging. Synthetic chlorins created de novo and bearing a geminal dimethyl group in the reduced ring have proved invaluable for fundamental studies. Four decades of research have led to accumulation of tabulated spectra for > 400 such synthetic chlorins with distinct structural frameworks (17-oxochlorins, 13 1 -oxophorbines, chlorinimides) and substituents (alkyl, aryl, ethynyl, phenylethynyl, acetyl, formyl) located at specific (meso, β) positions. In this review, spectral traces (324 absorption, 247 fluorescence) are assembled along with photophysical data including the molar absorption coefficient (ε), fluorescence quantum yield (Φ f ) and singlet excited-state lifetime (τ s ). The review uses the accumulated spectral data derived from chlorins all containing a uniform molecular scaffold to (1) highlight the effects of molecular structure on spectral features, and (2) identify trends including how ε, Φ f and τ s vary with wavelength and other features. Use of a common geminal-dimethyl-substituted chlorin scaffold – beginning with no substituents, to one substituent at designated sites, and to 2 or more substituents – provides a systematic Aufbau approach for understanding the absorption spectra of chlorins on a path to and beyond the native chlorophylls. Finally, the review provides insights concerning the rational design of potent analogues of Nature’s preeminent red-region absorbers for potential utilization in diverse applications and is aimed at multiple audiences: those interested in spectral properties, tetrapyrrole photophysics, and the molecular design of new chromophores.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Rising CO 2 and warming reduce global canopy demand for nitrogen

Nitrogen (N) limitation has been considered as a constraint on terrestrial carbon uptake in response to rising CO 2 and climate change. By extension, it has been suggested that declining carboxylation capacity (V cmax ) and leaf N content in enhanced-CO 2 experiments and satellite records signify increasing N limitation of primary production. We predicted Vcmax using the coordination hypothesis and estimated changes in leaf-level photosynthetic N for 1982–2016 assuming proportionality with leaf-level V cmax at 25°C. The whole-canopy photosynthetic N was derived using satellite-based leaf area index (LAI) data and an empirical extinction coefficient for V cmax , and converted to annual N demand using estimated leaf turnover times. The predicted spatial pattern of V cmax shares key features with an independent reconstruction from remotely sensed leaf chlorophyll content. Predicted leaf photosynthetic N declined by 0.27% yr -1 , while observed leaf (total) N declined by 0.2–0.25% yr -1 . Predicted global canopy N (and N demand) declined from 1996 onwards, despite increasing LAI. Leaf-level responses to rising CO 2 , and to a lesser extent temperature, may have reduced the canopy requirement for N by more than rising LAI has increased it. This finding provides an alternative explanation for declining leaf N that does not depend on increasing N limitation.

54 ENVIRONMENTAL SCIENCES↗

Opportunities and challenges for assigning cofactors in cryo-EM density maps of chlorophyll-containing proteins

Abstract The accurate assignment of cofactors in cryo-electron microscopy maps is crucial in determining protein function. This is particularly true for chlorophylls (Chls), for which small structural differences lead to important functional differences. Recent cryo-electron microscopy structures of Chl-containing protein complexes exemplify the difficulties in distinguishing Chl b and Chl f from Chl a . We use these structures as examples to discuss general issues arising from local resolution differences, properties of electrostatic potential maps, and the chemical environment which must be considered to make accurate assignments. We offer suggestions for how to improve the reliability of such assignments.

59 BASIC BIOLOGICAL SCIENCES↗

Laboratory analysis of techniques for remote sensing of estuarine parameters using laser excitation

The theoretical concepts underlying remote sensing of estuarine parameters using laser excitation are examined. The concepts are extended to include Mie scattering as a measure of the total suspended solids and to develop the water Raman signal as an internal standard. Experimental validation of the theory was performed using backscattered laser light from a laboratory tank to simulate a remote-sensing geometry. Artificially prepared sediments and biological cultures were employed to check specific aspects of the theory under controlled conditions. Natural samples gathered from a variety of water types were also analyzed in the tank to further enhance the simulation. The results indicate that it should be possible to remotely quantify total suspended solids, dissolved organics, attenuation coefficient, chlorophyll a, and phycoerythrin in estuarine water using laser excitation.

Exton, R. J.↗

Remote sensing of phytoplankton density and diversity in Narragansett Bay using an airborne fluorosensor

An aircraft-borne remote system is presented that utilizes narrow-band light from multiple dye lasers to excite selected algae photopigments and then measures the resultant flourescence emitted from chlorophyll a at 685 nm. Tests were conducted with both pure and mixed cultures of marine algae from a series of field tests taken from piers and bridges of Narragansett Bay, and a prototype remote fluorosensor was flown over the Bay during the 1978 winter-spring diatom bloom. Remote fluorescence obtained at hover points over sea-truth stations showed correlations with in situ fluorescence, total chlorophyll a, and cell count. It was concluded that the ratio of remote fluorescence to direct chlorophyll a concentration was less variable than expected, and the distribution of total chlorophyll a between two major photoplankton color groups showed three distinct areas, within the Bay, of green and golden-brown species.

Farmer, F. H.↗

Unmixing of Spectral Components Affecting AVIRIS Imagery of Tampa Bay

Models have been developed for use with hyperspectral remote-sensing reflectance data collected just above the air-sea interface for the West Florida Shelf 1,2,3,4,. They respond to variations in pigment, detrital, and gelbstoff absorption, chlorophyll a and gelbstoff flourescence, water Raman Scattering, Backscattering by water and particulate, and bottom depth and albedo.

Imagery↗

Airborne Fraunhofer Line Discriminator

Airborne Fraunhofer Line Discriminator enables prospecting for fluorescent materials, hydrography with fluorescent dyes, and plant studies based on fluorescence of chlorophyll. Optical unit design is the coincidence of Fraunhofer lines in the solar spectrum occurring at the characteristic wavelengths of some fluorescent materials.

Gabriel, F. C.↗

Discovery of Chlorophyll d : Isolation and Characterization of a Far-Red Cyanobacterium from the Original Site of Manning and Strain (1943) at Moss Beach, California

We have isolated a chlorophyll-d-containing cyanobacterium from the intertidal field site at Moss Beach, on the coast of Central California, USA, where Manning and Strain (1943) originally discovered this far-red chlorophyll. Here, we present the cyanobacterium’s environmental description, culturing procedure, pigment composition, ultrastructure, and full genome sequence. Among cultures of far-red cyanobacteria obtained from red algae from the same site, this strain was an epiphyte on a brown macroalgae. Its Q y in vivo absorbance peak is centered at 704–705 nm, the shortest wavelength observed thus far among the various known Acaryochloris strains. Its Chl a /Chl d ratio was 0.01, with Chl d accounting for 99% of the total Chl d and Chl a mass. TEM imagery indicates the absence of phycobilisomes, corroborated by both pigment spectra and genome analysis. The Moss Beach strain codes for only a single set of genes for producing allophycocyanin. Genomic sequencing yielded a 7.25 Mbp circular chromosome and 10 circular plasmids ranging from 16 kbp to 394 kbp. We have determined that this strain shares high similarity with strain S15, an epiphyte of red algae, while its distinct gene complement and ecological niche suggest that this strain could be the closest known relative to the original Chl d source of Manning and Strain (1943). The Moss Beach strain is designated Acaryochloris sp. (marina) strain Moss Beach.

chlorophyll d↗

Laboratory tank studies of a single species of phytoplankton using a remote sensing fluorosensor

Phytoplankton were grown in the laboratory for the purpose of testing a remote fluorosensor. The fluorosensor uses a unique four-wavelength dye laser system to excite phytoplankton bearing chlorophyll and to measure the chlorophyll fluorescence generated by this excitation. Six different species were tested, one at a time, and each was grown two to four times. Fluorescence measured by the fluorosensor provides good quantitative measurement of chlorophyll concentrations for all species tested while the cultures were in log phase growth. Fluorescene cross section ratios obtained in the single species tank tests support the hypothesis that the shape of the fluorescence cross section curve remains constant with the species (differences in fluorescence cross section ratios are a basis for determining composition of phytoplankton according to color group when a multiwavelength source of excitation is used. Linear relationships exist between extracted chlorophyll concentration and fluorescence measured by the remote fluorosensor during the log phase growth of phytoplankton cultures tested.

Brown, C. A., Jr.↗

Airborne Oceanographic Lidar (AOL) flight mission participation

From February 1986 to the present, the AOL participated in six interagency flight missions. (1) Shelf Edge Exchange Processes (SEEP II) (Department of Energy). The SEEP experiments are designed to assess the assimilative capacity of the Continental Shelf to absorb the energy by-products introduced into the near-shore ocean environment from coastal communities and marine activities such as energy production plants and offshore oil operations. (2) BIOWATT II (Office of Naval Research). The major objective of this study was to provide a better understanding of the relationships between ocean physics, biology, bioluminescence, and optics in oligotrophic portions of the Atlantic Ocean. (3) Fall Experiment (FLEX) (Department of Energy). The FLEX studies were designed to determine the fate of low salinity water in the coastal boundary zone that is advected south towards the Florida coast during autumn. (4) Greenland Sea and Icelandic Marine Biological Experiments (NASA). The investigations were designed to evaluate the distribution of surface layer chlorophyll in the Greeland Sea and in the coastal waters in the vicinity of Iceland. (5) Submerged Oceanic Scattering Layer Experiment (Naval Ocean Systems Center). This flight experiment demonstrated for the first time the feasibility of detecting and metrically measuring the depth to submerged layers of particulate matter in the shelf break region and in the inner coastal zone. (6) Microbial Exchanges and Coupling in Coastal Atlantic Systems (National Science Foundation). This investigation was designed to study the transportation and fate of particulates in coastal waters and in particular the Chesapeake Bay/coastal Atlantic Ocean. Shortly after the conduct of the flight experiments, airborne laser-induced chlorophyll a and phycoerythrin fluorescence data, as well as sea surface temperature and airborne expendable bathythermograph water column temperature profiles are supplied to cooperating institutions.

Hoge, F. E.↗

Spaceborne Sun-Induced Vegetation Fluorescence Time Series from 2007 to 2015 Evaluated with Australian Flux Tower Measurements

A global, monthly averaged time series of Sun-induced Fluorescence (SiF), spanning January 2007 to June 2015, was derived from Metop-A Global Ozone Monitoring Experiment 2 (GOME-2) spectral measurements. Far-red SiF was retrieved using the filling-in of deep solar Fraunhofer lines and atmospheric absorption bands based on the general methodology described by Joiner et al, AMT, 2013. A Principal Component (PC) analysis of spectra over non-vegetated areas was performed to describe the effects of atmospheric absorption. Our implementation (SiF KNMI) is an independent algorithm and differs from the latest implementation of Joiner et al, AMT, 2013 (SiF NASA, v26), because we used desert reference areas for determining PCs (as opposed to cloudy ocean and some desert) and a wider fit window that covers water vapour and oxygen absorption bands (as opposed to only Fraunhofer lines). As a consequence, more PCs were needed (35 as opposed to 12). The two time series (SiF KNMI and SiF NASA, v26) correlate well (overall R of 0.78) except for tropical rain forests. Sensitivity experiments suggest the strong impact of the water vapour absorption band on retrieved SiF values. Furthermore, we evaluated the SiF time series with Gross Primary Productivity (GPP) derived from twelve flux towers in Australia. Correlations for individual towers range from 0.37 to 0.84. They are particularly high for managed biome types. In the de-seasonalized Australian SiF time series, the break of the Millennium Drought during local summer of 2010/2011 is clearly observed.

Australia↗