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At least 55 records · Page 3

Los Alamos National Laboratory Meteorology Monitoring Program: 2016 Data Completeness/ Quality Report

This report summarizes data completeness by tower and by instrument for 2016 and compares that data with the Los Alamos National Laboratory (LANL) and American National Standards Institute (ANSI) 2015 standards. This report is designed to make data users aware of data completeness and any data quality issues. LANL meteorology monitoring goals include 95% completeness for all measurements. The ANSI 2015 standard requires 90% completeness for all measurements. This report documents instrument/tower issues as they impact data completeness.

58 GEOSCIENCES↗

Los Alamos National Laboratory Meteorology Monitoring Program: 2019 Data Completeness (Quality Report)

This report summarizes data completeness by tower and by instrument for 2019 and compares that data with the Los Alamos National Laboratory (LANL) and the ANSI/ANS-3.11-2015 standard. This report is designed to make data users aware of data completeness and any data quality issues. LANL meteorology monitoring goals include 95% completeness for all measurements. The ANS 2015 standard requires 90% completeness for all measurements. This report documents instrument/tower issues as they impact data completeness.

54 ENVIRONMENTAL SCIENCES↗

Multiphase complete exchange on Paragon, SP2 and CS-2

The overhead of interprocessor communication is a major factor in limiting the performance of parallel computer systems. The complete exchange is the severest communication pattern in that it requires each processor to send a distinct message to every other processor. This pattern is at the heart of many important parallel applications. On hypercubes, multiphase complete exchange has been developed and shown to provide optimal performance over varying message sizes. Most commercial multicomputer systems do not have a hypercube interconnect. However, they use special purpose hardware and dedicated communication processors to achieve very high performance communication and can be made to emulate the hypercube quite well. Multiphase complete exchange has been implemented on three contemporary parallel architectures: the Intel Paragon, IBM SP2 and Meiko CS-2. The essential features of these machines are described and their basic interprocessor communication overheads are discussed. The performance of multiphase complete exchange is evaluated on each machine. It is shown that the theoretical ideas developed for hypercubes are also applicable in practice to these machines and that multiphase complete exchange can lead to major savings in execution time over traditional solutions.

Bokhari, Shahid H.↗

Absolute measures of the completeness of the fossil record

Measuring the completeness of the fossil record is essential to understanding evolution over long timescales, particularly when comparing evolutionary patterns among biological groups with different preservational properties. Completeness measures have been presented for various groups based on gaps in the stratigraphic ranges of fossil taxa and on hypothetical lineages implied by estimated evolutionary trees. Here we present and compare quantitative, widely applicable absolute measures of completeness at two taxonomic levels for a broader sample of higher taxa of marine animals than has previously been available. We provide an estimate of the probability of genus preservation per stratigraphic interval, and determine the proportion of living families with some fossil record. The two completeness measures use very different data and calculations. The probability of genus preservation depends almost entirely on the Palaeozoic and Mesozoic records, whereas the proportion of living families with a fossil record is influenced largely by Cenozoic data. These measurements are nonetheless highly correlated, with outliers quite explicable, and we find that completeness is rather high for many animal groups.

Non-NASA Center↗

NASA’s Space Launch System: Exploration Mission-1 Hardware Nears Completion

The Space Launch System (SLS) Program completed several significant production milestones in 2018 for the launch vehicle’s first mission (Fig. 1) and is poised for greater accomplishments in 2019. With manufacturing and hardware installation finished, Boeing completed the core stage forward join and shipped the liquid hydrogen tank structural test article to Marshall Space Flight Center for testing. The core stage aft join and LOX tank STA are expected to be completed in 2019 on the way to final stage integration. The four EM-1 engines are poised for stage integration in 2019. The Launch Vehicle Stage Adapter completed outfitting at Marshall and will be shipped to Kennedy Space Center in 2019. All solid rocket motor segments for the EM-1 boosters are cast, inspected and ready for shipment to KSC. The upper stage, the Interim Cryogenic Propulsion Stage (ICPS), and the Orion Stage Adapter (OSA), where 13 6U CubeSats will ride to deep space on EM-1, were completed and delivered to Exploration Ground Systems at KSC in 2017 and 2018, respectively. The Program continues to work toward first launch of the nation’s new super heavy lift deep space capability in fiscal 2020. SLS is designed, engineered and tested to launch the most challenging exploration missions, minimizing risk and providing the greatest opportunity for mission success. This paper will discuss the technical and programmatic successes and challenges of the past year and look ahead to plans for 2019.

Honeycutt, John↗

NASA’s Space Launch System: First Mission Hardware Nears Completion

The Space Launch System (SLS) Program (Fig. 1) completed several significant production milestones in 2018 for its first mission and is poised for greater accomplishments in 2019. With manufacturing and hardware installation complete, Boeing completed the core stage forward join and shipped the liquid hydrogen tank structural test article to Marshall Space Flight Center for testing. The core stage aft join and LOX tank STA are expected to be completed in 2019 on the way to final stage integration. The four EM-1 engines are poised for stage integration in 2019. The Launch Vehicle Stage Adapter completed outfitting at Marshall and will be shipped to Kennedy Space Center in 2019. All solid rocket motor segments for the EM-1 boosters are cast, inspected and ready for shipment to KSC. The Program continues to work toward first launch of the nation’s new super heavy lift deep space capability in fiscal 2020. SLS is designed, engineered and tested to launch the most challenging exploration missions, minimizing risk and providing the greatest opportunity for mission success and scientific discovery. This paper will discuss the technical and programmatic successes and challenges of the past year and look ahead to plans for 2019.

Honeycutt, John↗

Matrix Completion Using Alternating Minimization for Distribution System State Estimation

This paper examines the problem of state estimation in power distribution systems under low-observability conditions. The recently proposed constrained matrix completion method which combines the standard matrix completion method and power flow constraints has been shown to be effective in estimating voltage phasors under low-observability conditions using single-snapshot information. However, the method requires solving a semidefinite programming (SDP) problem, which becomes computationally infeasible for large systems and if multiple-snapshot (time-series) information is used. This paper proposes an efficient algorithm to solve the constrained matrix completion problem with time-series data. This algorithm is based on reformulating the matrix completion problem as a bilinear (non-convex) optimization problem, and applying the alternating minimization algorithm to solve this problem. This paper proves the summable convergence of the proposed algorithm, and demonstrates its efficacy and scalability via IEEE 123-bus system and a real utility feeder system. This paper also explores the value of adding more data from the history in terms of computation time and estimation accuracy.

41 EE - Solar Energy Technologies Office (EE-4S)↗

Matrix Completion Using Alternating Minimization for Distribution System State Estimation: Preprint

This paper examines the problem of state estimation in power distribution systems under low-observability conditions. The recently proposed constrained matrix completion method which combines the standard matrix completion method and power flow constraints has been shown to be effective in estimating voltage phasors under low-observability conditions using single-snapshot information. However, the method requires solving a semidefinite programming (SDP) problem, which becomes computationally infeasible for large systems and if multiple-snapshot (time-series) information is used. This paper proposes an efficient algorithm to solve the constrained matrix completion problem with time-series data. This algorithm is based on reformulating the matrix completion problem as a bilinear (non-convex) optimization problem, and applying the alternating minimization algorithm to solve this problem. This paper proves the summable convergence of the proposed algorithm, and demonstrates its efficacy and scalability via IEEE 123-bus system and a real utility feeder system. This paper also explores the value of adding more data from the history in terms of computation time and estimation accuracy.

41 EE - Solar Energy Technologies Office (EE-4S)↗

Mechanisms of Complete Dissociation of CO 2 on Iron Clusters

Dissociation of CO 2 on iron clusters was studied by using semilocal density functional theory and basis sets of triple-zeta quality. Fe 2 , Fe 4 , and Fe 16 clusters were selected as the representative host clusters. When searching for isomers of Fe n CO 2 , n=2, 4 and 16 corresponding to carbon dioxide attachment to the host clusters, its reduction to O and CO, and to the complete dissociation, it was found that the total spin magnetic moments of the lowest energy states of the isomers are often quenched with respect to those of initial reagents Fe n +CO 2 . Dissociation pathways of the Fe 2 +CO 2 , Fe 4 +CO 2 , and Fe 16 +CO 2 reactions contain several transition states separated by the local minima states; therefore, a natural question is where do the spin flips occur? Since lifetimes of magnetically excited states were shown to be of the order of 100 fs, the search for the CO 2 dissociation pathways was performed under the assumption that magnetic deexcitation may occur at the intermediate local minima. Two dissociation pathways were obtained for each Fe n +CO 2 reaction using the gradient-based methods. It was found that the Fe 2 +CO 2 reaction is endothermic with respect to both reduction and complete dissociation of CO 2 , whereas the Fe 4 +CO 2 and Fe 16 +CO 2 reactions are exothermic to both reduction and complete dissociation of carbon dioxide. Finally, the CO 2 reduction was found to be more favorable than its complete dissociation in the Fe 4 case.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Structured versus narrative reporting of pelvic MRI in perianal fistulizing disease: impact on clarity, completeness, and surgical planning

Objective: To evaluate clarity, completeness, and impact on surgical planning of MRI reporting of perianal fistulizing disease using a structured disease-specific template versus narrative reporting for planning of disease treatment by colorectal surgeons. Materials and methods: In this HIPAA-compliant, IRB-approved study with waiver of informed consent, a structured reporting template for perianal fistulizing disease MRIs was developed based on collaboration between colorectal surgeons and abdominal radiologists. The study population included 45 consecutive patients who underwent pelvic MRI for perianal fistulizing disease prior to implementation of structured reporting, and 60 consecutive patients who underwent pelvic MRI for perianal fistulizing disease after implementation of structured reporting. Objective evaluation of the reports for the presence of 12 key features was performed, as also subjective evaluation regarding the clarity and completeness of reports, and impact on surgical planning. Results: Significantly more key features were absent in narrative reports [mean: 6.3 ± 1.8 (range 3–11)] than in structured reports [mean: 0.3 ± 0.9 (range 1–5)] (p ≤ 0.001). The use of structured reporting also increased the percentage of completeness (72.5–88.3% for surgeon 1, and 61.2–81.3% for surgeon 2; p = 0.05 and 0.03, respectively), helpfulness in surgical planning (7.1 ± 1.5–7.6 ± 1.5 for surgeon 1, and 5.8 ± 1.4–7.1 ± 1.1 for surgeon 2; p = 0.05 and p < 0.001, respectively), and clarity (7.6 ± 1.3–8.3 ± 1.1 for surgeon 1, and 5.2 ± 1.4–7.1 ± 1.3 for surgeon 2; p = 0.006 and p < 0.001, respectively) of the reports. Conclusion: Structured MRI reports in patients with perianal fistulizing disease miss fewer key features than narrative reports. Moreover, structured reports were described as more complete and clear, and more helpful for treatment planning.

62 RADIOLOGY AND NUCLEAR MEDICINE↗

Is the Matrix Completion of Reduced Density Matrices Unique?

Reduced density matrices are central to describing observables in many-body quantum systems. In electronic structure theory, the two-particle reduced density matrix (2-RDM) suffices to determine the energy and other key properties. Recent work has used matrix completion, leveraging the low-rank structure of RDMs and approximate theoretical models, to reconstruct the 2-RDM from partial data and thus reduce the computational cost. However, matrix completion is, in general, an under-determined problem. Revisiting Rosina’s theorem (Rosina, M. Queen’s Papers on Pure and Applied Mathematics , 1968, No. 11, 369), we here show that the matrix completion is unique under certain conditions, identifying the subset of 2-RDM elements that enables its exact reconstruction from incomplete information. Building on this, we introduce a hybrid quantum–stochastic algorithm that achieves exact matrix completion, demonstrated through applications to the Fermi–Hubbard model.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Earthquake catalog-based machine learning identification of laboratory fault states and the effects of magnitude of completeness

Here, machine learning regression can predict macroscopic fault properties such as shear stress, friction, and time to failure using continuous records of fault zone acoustic emissions. Here we show that a similar approach is successful using event catalogs derived from the continuous data. Our methods are applicable to catalogs of arbitrary scale and magnitude of completeness. We investigate how machine learning regression from an event catalog of laboratory earthquakes performs as a function of the catalog magnitude of completeness. We find that strong model performance requires a sufficiently low magnitude of completeness, and below this magnitude of completeness, model performance saturates.

58 GEOSCIENCES↗

Mass functions, luminosity functions, and completeness measurements from clustering redshifts

Abstract This paper presents stellar mass functions and i-band luminosity functions for Sloan Digital Sky Survey (SDSS) galaxies with i < 21 using clustering redshifts. From these measurements, we also compute targeting completeness measurements for the Baryon Oscillation Spectroscopic Survey (BOSS). Clustering redshifts is a method of obtaining the redshift distribution of a sample of galaxies with only photometric information by measuring the angular cross-correlation with a spectroscopic sample in different redshift bins. We construct a spectroscopic sample containing data from the BOSS + eBOSS surveys, allowing us to recover redshift distributions from photometric data out to z ≃ 2.5. We produce k-corrected i-band luminosity functions and stellar mass functions by applying clustering redshifts to SDSS DR8 galaxies in small bins of colour and magnitude. There is little evolution in the mass function between 0.2 < z < 0.8, implying that the most massive galaxies form most of their mass before z = 0.8. These mass functions are used to produce stellar mass completeness estimates for the BOSS, giving a stellar mass completeness of $80{{\ \rm per\ cent}}$ above M⋆ > 1011.4 between 0.2 < z < 0.7, with completeness falling significantly at redshifts higher than 0.7, and at lower masses. Large photometric data sets will be available in the near future (DECaLS, DES, Euclid), so this and similar techniques will become increasingly useful in order to fully utilize these data.

Bates, Dominic J.↗

Accurate and complete genomes from metagenomes

Genomes are an integral component of the biological information about an organism; thus, the more complete the genome, the more informative it is. Historically, bacterial and archaeal genomes were reconstructed from pure (monoclonal) cultures, and the first reported sequences were manually curated to completion. However, the bottleneck imposed by the requirement for isolates precluded genomic insights for the vast majority of microbial life. Shotgun sequencing of microbial communities, referred to initially as community genomics and subsequently as genome-resolved metagenomics, can circumvent this limitation by obtaining metagenome-assembled genomes (MAGs); but gaps, local assembly errors, chimeras, and contamination by fragments from other genomes limit the value of these genomes. Here, we discuss genome curation to improve and, in some cases, achieve complete (circularized, no gaps) MAGs (CMAGs). To date, few CMAGs have been generated, although notably some are from very complex systems such as soil and sediment. Through analysis of about 7000 published complete bacterial isolate genomes, we verify the value of cumulative GC skew in combination with other metrics to establish bacterial genome sequence accuracy. The analysis of cumulative GC skew identified potential misassemblies in some reference genomes of isolated bacteria and the repeat sequences that likely gave rise to them. We discuss methods that could be implemented in bioinformatic approaches for curation to ensure that metabolic and evolutionary analyses can be based on very high-quality genomes.

59 BASIC BIOLOGICAL SCIENCES↗

A method for achieving complete microbial genomes and improving bins from metagenomics data

Metagenomics facilitates the study of the genetic information from uncultured microbes and complex microbial communities. Assembling complete genomes from metagenomics data is difficult because most samples have high organismal complexity and strain diversity. Some studies have attempted to extract complete bacterial, archaeal, and viral genomes and often focus on species with circular genomes so they can help confirm completeness with circularity. However, less than 100 circularized bacterial and archaeal genomes have been assembled and published from metagenomics data despite the thousands of datasets that are available. Circularized genomes are important for (1) building a reference collection as scaffolds for future assemblies, (2) providing complete gene content of a genome, (3) confirming little or no contamination of a genome, (4) studying the genomic context and synteny of genes, and (5) linking protein coding genes to ribosomal RNA genes to aid metabolic inference in 16S rRNA gene sequencing studies. We developed a semi-automated method called Jorg to help circularize small bacterial, archaeal, and viral genomes using iterative assembly, binning, and read mapping. In addition, this method exposes potential misassemblies from k-mer based assemblies. We chose species of the Candidate Phyla Radiation (CPR) to focus our initial efforts because they have small genomes and are only known to have one ribosomal RNA operon. In addition to 34 circular CPR genomes, we present one circular Margulisbacteria genome, one circular Chloroflexi genome, and two circular megaphage genomes from 19 public and published datasets. We demonstrate findings that would likely be difficult without circularizing genomes, including that ribosomal genes are likely not operonic in the majority of CPR, and that some CPR harbor diverged forms of RNase P RNA. Code and a tutorial for this method is available at https://github.com/lmlui/Jorg and is available on the DOE Systems Biology KnowledgeBase as a beta app.

59 BASIC BIOLOGICAL SCIENCES↗

Causal Analysis Report for "Demolition of Historic and Yet-to-be-Determined Radar Towers at TTR Without Completing Required NEPA Process"

Two radar towers at the Tonopah Test Range (TTR), Contraves Towers 22-00 and 12-00, were torn down prior to completion of the required National Environmental Policy Act (NEPA) process. National Technology and Engineering Solutions of Sandia, LLC, (NTESS) submission of the NEPA checklist triggered a Sandia Field Office (SFO) review of the proposed work scope and was to include a required consultation between SFO and the Nevada State Historic Preservation Office (SHPO) to assess any adverse effect(s) on historic properties or contributing element(s) to a historic district and, if so, determine a resolution. Following the consultation, SFO provides approval/denial of the proposed work detailed on the submitted NEPA checklist. Contraves Tower 22-00 is a historic structure, as formally determined by the SFO in consultation with the SHPO. The historical eligibility of Contraves Tower 12-00 is yet to be determined. On February 13, 2018, NTESS notified SFO that Contraves Tower 22-00 at TTR was torn down in May 2017 prior to completion of the required the NEPA process, including consultation with the SHPO. NTESS submitted two NEPA checklists to SFO in 2016 for the removal of several structures no longer required by NTESS. The first NEPA checklist listed three historic structures (one of which was Contraves Tower 22-00) and SFO determination on whether consultation with the SHPO is necessary as well as approval/denial of the NEPA checklist is pending. The second NEPA checklist listed five non-historic structures, one of which was Contraves Tower 12-00. SFO approved the NEPA checklist covering non historic structures except for the Contraves Tower 12-00, as the Contraves Tower 12-00 requires further consultation with the SHPO by SFO. Only after completion of the consultation would SFO determine approval/denial on the remaining property cited within the NEPA checklist. In late January 2018, NTESS personnel discovered that Contraves Tower 22-00 was no longer listed in the Facility Information Management System (FIMS). Upon further investigation, NTESS personnel verified that the Contraves Tower 22-00 had been removed in May 2017. During the initial extent of condition, it was discovered that Contraves Tower 12-00 had also been torn down in May 2017 as part of this same destruction and demolition (D&D) activity. Both Contraves Towers 22-00 and 12-00) had been torn down prior to completion of the NEPA process, including consultation with the SHPO.

29 ENERGY PLANNING, POLICY, AND ECONOMY↗

Revisiting the completeness and luminosity function in high-redshift low-luminosity quasar surveys

Recent studies have derived quasar luminosity functions (QLFs) at various redshifts. However, the faint side of the QLF at high redshifts is still too uncertain. An accurate estimate of the survey completeness is essential to derive an accurate QLF for use in studying the luminosity-dependent density evolution (LDDE) of the quasar population. Here we investigate how the luminosity dependence of quasar spectra (the Baldwin effect) and the attenuation model for the intergalactic medium (IGM) affect the completeness estimates. For this purpose, we specifically revisit the completeness of quasar surveys at z∼4--5, using the COSMOS images observed with Subaru/Suprime-Cam. As a result, we find that the completeness estimates are sensitive to the luminosity dependence of the quasar spectrum and to different the IGM attenuation models. At z∼4, the number density of quasars when we adopt the latest IGM model and take the luminosity dependence of spectra into account is (3.49±1.62)×10{sup −7} Mpc{sup −3} mag{sup −1} for −24.09<M{sub 1450}<−23.09 and (5.24±2.13)×10{sup −7} Mpc{sup −3} mag{sup −1} for −23.09<M{sub 1450}<−22.09, which are ∼24% lower than that estimated by the conventional method. On the other hand, at z∼5, the 1σ confidence upper limit of the number density at −24.5<M{sub 1450}<−22.5 in our new estimates is ∼43% higher than that estimated previously. The results suggest that the luminosity dependence of the quasar spectrum and the IGM model are important for deriving the accurate number density of high-z quasars. Even taking these effects into account, the inferred LDDE of quasars is consistent with the AGN downsizing evolutionary picture.

79 ASTRONOMY AND ASTROPHYSICS↗

HectoMAP: The Complete Redshift Survey (Data Release 2)

HectoMAP is a dense redshift survey of 95,403 galaxies based primarily on MMT spectroscopy with a median redshift z = 0.345. The survey covers 54.64 deg 2 in a 1$_{.}^{°}$5 wide strip across the northern sky centered at a decl. of 43$_{.}^{°}$25. We report the redshift, the spectral indicator D n 4000, and the stellar mass. The red-selected survey is 81% complete for 55,962 galaxies with (g - r) > 1 and r < 20.5; it is 72% complete for 32,908 galaxies with (g - r > 1, (r - i) > 0.5 and 20.5 < r < 21.3. Comparison of the survey basis SDSS photometry with the HSC-SSP photometry demonstrates that HectoMAP provides complete magnitude-limited surveys based on either photometric system. We update the comparison between the HSC-SSP photometric redshifts with HectoMAP spectroscopic redshifts; the comparison demonstrates that the HSC-SSP photometric redshifts have improved between the second and third data releases. HectoMAP is a foundation for examining the quiescent galaxy population (63% of the survey), clusters of galaxies, and the cosmic web. HectoMAP is completely covered by the HSC-SSP survey, thus enabling a variety of strong- and weak-lensing investigations.

79 ASTRONOMY AND ASTROPHYSICS↗