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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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At least 55 records · Page 3

Variable rate neural compression for sparse detector data

Particle colliders produce data at extraordinary rates, posing major challenges for transmission and storage. High-throughput compression algorithms are therefore essential. In the sPHENIX experiment taking data at the Relativistic Heavy Ion Collider, a time projection chamber records three-dimensional (3D) particle trajectories that are highly sparse, making conventional learning-free lossy compression ineffective. Convolutional neural networks have surpassed traditional methods in compression ratio and accuracy. However, they fail to exploit sparsity for efficiency. To address these gaps, we present BCAE-VS, a bicephalous convolutional autoencoder with variable compression ratio for sparse data, which adapts compression to input complexity through key-point identification and sparse convolution. BCAE-VS achieves higher accuracy and compression ratios than prior neural approaches while being orders of magnitude smaller. Moreover, its throughput increases with sparsity—a property not observed in other methods. Although it was developed for collider experiments, BCAE-VS readily extends to other sparse data domains, such as light detection and ranging (LiDAR) sensing and 3D microscopy.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

A fixed/variable bit-rate data compression architecture

A VLSI architecture for an adaptive data compression encoder capable of sustaining fixed or variable bit-rate output has been developed. There are three modes of operation: lossless with variable bit-rate, lossy with fixed bit-rate and lossy with variable bit-rate. For lossless encoding, the implementation is identical to the USES chip designed for Landsat 7. Obtaining a fixed bit-rate is achieved with a lossy DPCM algorithm using adaptive, nonuniform scalar quantization. In lossy mode, variable bit-rate coding uses the lossless sections of the encoder for post-DPCM entropy coding. The encoder shows excellent compression performance in comparison to other current data compression techniques. No external tables or memory are required for operation.

Zweigle, Gregary C.↗

Metronome Use for Coordination of Breaths and Cardiac Compressions Delivered by Minimally-Trained Caregivers During Two-Person CPR

Astronaut crew medical officers (CMO) aboard the International Space Station (ISS) receive 40 hours of medical training over 18 months before each mission, including two-person cardiopulmonary resuscitation (2CPR) as recommended by the American Heart Association (AHA). Recent studies have concluded that the use of metronomic tones improves the coordination of 2CPR by trained clinicians. 2CPR performance data for minimally-trained caregivers has been limited. The goal of this study was to determine whether use of a metronome by minimally-trained caregivers (CMO analogues) would improve 2CPR performance. 20 pairs of minimally-trained caregivers certified in 2CPR via AHA guidelines performed 2CPR for 4 minutes on an instrumented manikin using 3 interventions: 1) Standard 2CPR without a metronome [NONE], 2) Standard 2CPR plus a metronome for coordinating compression rate only [MET], 3) Standard 2CPR plus a metronome for coordinating both the compression rate and ventilation rate [BOTH]. Caregivers were evaluated for their ability to meet the AHA guideline of 32 breaths-240 compressions in 4 minutes. All (100%) caregivers using the BOTH intervention provided the required number of ventilation breaths as compared with the NONE caregivers (10%) and MET caregivers (0%). For compressions, 97.5% of the BOTH caregivers were not successful in meeting the AHA compression guideline; however, an average of 238 compressions of the desired 240 were completed. None of the caregivers were successful in meeting the compression guideline using the NONE and MET interventions. This study demonstrates that use of metronomic tones by minimally-trained caregivers for coordinating both compressions and breaths improves 2CPR performance. Meeting the breath guideline is important to minimize air entering the stomach, thus decreasing the likelihood of gastric aspiration. These results suggest that manifesting a metronome for the ISS may augment the performance of 2CPR on orbit and thus may increase the level of care.

Hurst, Victor, IV↗

Optimizing Lossy Compression Rate-Distortion from Automatic Online Selection between SZ and ZFP

With ever-increasing volumes of scientific data produced by high-performance computing applications, significantly reducing data size is critical because of limited capacity of storage space and potential bottlenecks on I/O or networks in writing/reading or transferring data. SZ and ZFP are two leading BSD licensed open source C/C++ libraries for compressed floating-point arrays that support high throughput read and write random access. However, their performance is not consistent across different data sets and across different fields of some data sets, which raises the need for an automatic online (during compression) selection between SZ and ZFP, with minimal overhead. In this paper, the automatic selection optimizes the rate-distortion, an important statistical quality metric based on the signal-to-noise ratio. To optimize for rate-distortion, we investigate the principles of SZ and ZFP. We then propose an efficient online, low-overhead selection algorithm that predicts the compression quality accurately for two compressors in early processing stages and selects the best-fit compressor for each data field. Here, we implement the selection algorithm into an open-source library, and we evaluate the effectiveness of our proposed solution against plain SZ and ZFP in a parallel environment with 1,024 cores. Evaluation results on three data sets representing about 100 fields show that our selection algorithm improves the compression ratio up to 70 percent with the same level of data distortion because of very accurate selection (around 99 percent) of the bestfit compressor, with little overhead (less than 7 percent in the experiments).

97 MATHEMATICS AND COMPUTING↗

Free convection in enclosures exposed to compressive heating

An experimental study of heat transfer in a vertical annulus and a three-dimensional gap used to establish the influence of compressive heating on the convective process in enclosures is presented. Test runs were made using helium gas with compressive rates of 6, 15, and 30 psi/min. Temperature and pressure histories were reduced to film coefficients based on nodal modeling of the test geometries. The data are correlated in terms of free convection parameters. The heat transfer correlations show virtually no influence of compression rate and only a slight dependence on geometry. The correlations will be applied to the design of a vented Galileo mission descent module parachuting into the Jupiter atmosphere.

Bobco, R. P.↗

What Sets the Star Formation Rate of Molecular Clouds? The Density Distribution as a Fingerprint of Compression and Expansion Rates

We use a suite of 3D simulations of star-forming molecular clouds, with and without stellar feedback, magnetic fields, and driven turbulence, to study the compression and expansion rates of the gas as functions of density. We show that, around the mean density, supersonic turbulence promotes rough equilibrium between the amounts of compressing and expanding gas, consistent with continuous gas cycling between high- and low-density states. We find that the inclusion of protostellar jets produces rapidly expanding and compressing low-density gas. We find that the gas mass flux peaks at the transition between the lognormal and power-law forms of the density probability distribution function (PDF). This is consistent with the transition density tracking the post-shock density, which promotes an enhancement of mass at this density (i.e., shock compression and filament formation). At high densities, the gas dynamics are dominated by self-gravity: the compression rate in all of our runs matches the rate of the run with only gravity, suggesting that processes other than self-gravity have little effect at these densities. The net gas mass flux becomes constant at a density below the sink formation threshold, where it equals the star formation rate. The density at which the net gas mass flux equals the star formation rate is one order of magnitude lower than our sink threshold density, corresponds to the formation of the second power-law tail in the density PDF, and sets the overall star formation rates of these simulations.

79 ASTRONOMY AND ASTROPHYSICS↗

Lossless Compression and Rate Control for the Galileo NIMS Experiment

The Galileo Near-Infrared Mapping Spectrometer (NIMS) is a sophisticated multi-spectral instrument that was developed to study the spatial/compositional aspects of the atmosphere of Jupiter and the surfaces of it's satellites. Since its original development, the communication capability of the Galileo spacecraft has been severly reduced as the result of a failure of ground controllers to open the main antenna. The data rate which will be available for all instruments at the first Jupiter encounter in 1995 has been reduced by several orders of magnitude (even after recent numerous improvements to data link efficiency.).

data compression NIMS instrument Galileo↗

New dynamic diamond anvil cells for tera-pascal per second fast compression x-ray diffraction experiments

Fast compression experiments performed using dynamic diamond anvil cells (dDACs) employing piezoactuators offer the opportunity to study compression-rate dependent phenomena. In this paper, we describe an experimental setup which allows us to perform time-resolved x-ray diffraction during the fast compression of materials using improved dDACs. The combination of the high flux available using a 25.6 keV x-ray beam focused with a linear array of compound refractive lenses and the two fast GaAs LAMBDA detectors available at the Extreme Conditions Beamline (P02.2) at PETRA III enables the collection of x-ray diffraction patterns at an effective repetition rate of up to 4 kHz. Compression rates of up to 160 TPa/s have been achieved during the compression of gold in a 2.5 ms fast compression using improved dDAC configurations with more powerful piezoactuators. The application of this setup to low-Z compounds at lower compression rates is described, and the high temporal resolution of the setup is demonstrated. The possibility of applying finely tuned pressure profiles opens opportunities for future research, such as using oscillations of the piezoactuator to mimic propagation of seismic waves in the Earth.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Z-checker: A framework for assessing lossy compression of scientific data

Because of the vast volume of data being produced by today’s scientific simulations and experiments, lossy data compressor allowing user-controlled loss of accuracy during the compression is a relevant solution for significantly reducing the data size. However, lossy compressor developers and users are missing a tool to explore the features of scientific data sets and understand the data alteration after compression in a systematic and reliable way. To address this gap, we have designed and implemented a generic framework called Z-checker. On the one hand, Z-checker combines a battery of data analysis components for data compression. On the other hand, Z-checker is implemented as an open-source community tool to which users and developers can contribute and add new analysis components based on their additional analysis demands. In this article, we present a survey of existing lossy compressors. Then, we describe the design framework of Z-checker, in which we integrated evaluation metrics proposed in prior work as well as other analysis tools. Specifically, for lossy compressor developers, Z-checker can be used to characterize critical properties (such as entropy, distribution, power spectrum, principal component analysis, and autocorrelation) of any data set to improve compression strategies. For lossy compression users, Z-checker can detect the compression quality (compression ratio and bit rate) and provide various global distortion analysis comparing the original data with the decompressed data (peak signal-to-noise ratio, normalized mean squared error, rate–distortion, rate-compression error, spectral, distribution, and derivatives) and statistical analysis of the compression error (maximum, minimum, and average error; autocorrelation; and distribution of errors). Z-checker can perform the analysis with either coarse granularity (throughout the whole data set) or fine granularity (by user-defined blocks), such that the users and developers can select the best fit, adaptive compressors for different parts of the data set. Z-checker features a visualization interface displaying all analysis results in addition to some basic views of the data sets such as time series. To the best of our knowledge, Z-checker is the first tool designed to assess lossy compression comprehensively for scientific data sets.

97 MATHEMATICS AND COMPUTING↗

Accelerating Relative-error Bounded Lossy Compression for HPC datasets with Precomputation-Based Mechanisms

Scientific simulations in high-performance computing (HPC) environments are producing vast volume of data, which may cause a severe I/O bottleneck at runtime and a huge burden on storage space for post-analysis. Unlike the traditional data reduction schemes (such as deduplication or lossless compression), not only can error-controlled lossy compression significantly reduce the data size but it can also hold the promise to satisfy user demand on error control. Point-wise relative error bounds (i.e., compression errors depends on the data values) are widely used by many scientific applications in the lossy compression, since error control can adapt to the precision in the dataset automatically. Point-wise relative error bounded compression is complicated and time consuming. In this work, we develop efficient precomputation-based mechanisms in the SZ lossy compression framework. Our mechanisms can avoid costly logarithmic transformation and identify quantization factor values via a fast table lookup, greatly accelerating the relative-error bounded compression with excellent compression ratios. In addition, our mechanisms also help reduce traversing operations for Huffman decoding, and thus significantly accelerate the decompression process in SZ. Experiments with four well-known real-world scientific simulation datasets show that our solution can improve the compression rate by about 30% and decompression rate by about 70% in most of cases, making our designed lossy compression strategy the best choice in class in most cases.

compression rate↗

Fast Detection of Material Deformation through Structural Dissimilarity

Designing materials that are resistant to extreme temperatures and brittleness relies on assessing structural dynamics of samples. Algorithms are critically important to characterize material deformation under stress conditions. Here, we report on our design of coarse-grain parallel algorithms for image quality assessment based on structural information and on crack detection of gigabyte-scale experimental datasets. We show how key steps can be decomposed into distinct processing flows, one based on structural similarity (SSIM) quality measure, and another on spectral content. These algorithms act upon image blocks that fit into memory, and can execute independently. We discuss the scientific relevance of the problem, key developments, and decomposition of complementary tasks into separate executions. We show how to apply SSIM to detect material degradation, and illustrate how this metric can be allied to spectral analysis for structure probing, while using tiled multi-resolution pyramids stored in HDF5 chunked multi-dimensional arrays. Results show that the proposed experimental data representation supports an average compression rate of 10X, and data compression scales linearly with the data size. We also illustrate how to correlate SSIM to crack formation, and how to use our numerical schemes to enable fast detection of deformation from 3D datasets evolving in time.

Ushizima, Daniela↗

Formation of distinctive nanostructured metastable polymorphs mediated by kinetic transition pathways in germanium

High-pressure β -Sn germanium may transform into diverse metastable allotropes with distinctive nanostructures and unique physical properties via multiple pathways under decompression. However, the mechanism and transition kinetics remain poorly understood. Here, we investigate the formation of metastable phases and nanostructures in germanium via controllable transition pathways of β -Sn Ge under rapid decompression at different rates. High-resolution transmission electron microscopy reveals three distinct metastable phases with the distinctive nanostructures: an almost perfect st12 Ge crystal, nanosized bc8/r8 structures with amorphous boundaries, and amorphous Ge with nanosized clusters (0.8–2.5 nm). Fast in situ x-ray diffraction and x-ray absorption measurements indicate that these nanostructured products form in certain pressure regions via distinct kinetic pathways and are strongly correlated with nucleation rates and electronic transitions mediated by compression rate, temperature, and stress. This work provides deep insight into the controllable synthesis of metastable materials with unique crystal symmetries and nanostructures for potential applications.

36 MATERIALS SCIENCE↗

A High Performance Image Data Compression Technique for Space Applications

A highly performing image data compression technique is currently being developed for space science applications under the requirement of high-speed and pushbroom scanning. The technique is also applicable to frame based imaging data. The algorithm combines a two-dimensional transform with a bitplane encoding; this results in an embedded bit string with exact desirable compression rate specified by the user. The compression scheme performs well on a suite of test images acquired from spacecraft instruments. It can also be applied to three-dimensional data cube resulting from hyper-spectral imaging instrument. Flight qualifiable hardware implementations are in development. The implementation is being designed to compress data in excess of 20 Msampledsec and support quantization from 2 to 16 bits. This paper presents the algorithm, its applications and status of development.

Yeh, Pen-Shu↗

In situ compression artifact removal in scientific data using deep transfer learning and experience replay

The massive amount of data produced during simulation on high-performance computers has grown exponentially over the past decade, exacerbating the need for streaming compression and decompression methods for efficient storage and transfer of this data---key to realizing the full potential of large-scale computational science. Lossy compression approaches such as JPEG when applied to scientific simulation data realized as a stream of images can achieve good compression rates but at the cost of introducing compression artifacts and loss of information. This paper develops a unified framework for in situ compression artifact removal in which the fully convolutional neural network architectures are combined with scalable training, transfer learning, and experience replay to achieve superior accuracy and efficiency while significantly decreasing the storage footprint as compared with the traditional optimization-based approaches. We demonstrate the proposed approach and compare it with compressed sensing postprocessing and other baseline deep learning models using climate simulations and nuclear reactor simulations, both of which are driven by hyperbolic partial differential equations. Our approach when applied to remove the compression artifacts on the JPEG-compressed nuclear reactor simulation data (using a transfer-trained model that was pretrained on the climate simulation data and updated incrementally as the nuclear reactor simulation progressed), achieved a significant improvement---mean peak signal-to-noise ratio of 42.438 as compared with 27.725 obtained with the compressed sensing approach.

97 MATHEMATICS AND COMPUTING↗

A Real-Time High Performance Data Compression Technique For Space Applications

A high performance lossy data compression technique is currently being developed for space science applications under the requirement of high-speed push-broom scanning. The technique is also error-resilient in that error propagation is contained within a few scan lines. The algorithm is based on block-transform combined with bit-plane encoding; this combination results in an embedded bit string with exactly the desirable compression rate. The lossy coder is described. The compression scheme performs well on a suite of test images typical of images from spacecraft instruments. Hardware implementations are in development; a functional chip set is expected by the end of 2001.

Yeh, Pen-Shu↗

Block adaptive rate controlled image data compression

A block adaptive rate controlled (BARC) image data compression algorithm is described. It is noted that in the algorithm's principal rate controlled mode, image lines can be coded at selected rates by combining practical universal noiseless coding techniques with block adaptive adjustments in linear quantization. Compression of any source data at chosen rates of 3.0 bits/sample and above can be expected to yield visual image quality with imperceptible degradation. Exact reconstruction will be obtained if the one-dimensional difference entropy is below the selected compression rate. It is noted that the compressor can also be operated as a floating rate noiseless coder by simply not altering the input data quantization. Here, the universal noiseless coder ensures that the code rate is always close to the entropy. Application of BARC image data compression to the Galileo orbiter mission of Jupiter is considered.

Rice, R. F.↗