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Spectral imaging applications: Remote sensing, environmental monitoring, medicine, military operations, factory automation and manufacturing

This paper reviews the activities at OKSI related to imaging spectroscopy presenting current and future applications of the technology. The authors discuss the development of several systems including hardware, signal processing, data classification algorithms and benchmarking techniques to determine algorithm performance. Signal processing for each application is tailored by incorporating the phenomenology appropriate to the process, into the algorithms. Pixel signatures are classified using techniques such as principal component analyses, generalized eigenvalue analysis and novel very fast neural network methods. The major hyperspectral imaging systems developed at OKSI include the Intelligent Missile Seeker (IMS) demonstration project for real-time target/decoy discrimination, and the Thermal InfraRed Imaging Spectrometer (TIRIS) for detection and tracking of toxic plumes and gases. In addition, systems for applications in medical photodiagnosis, manufacturing technology, and for crop monitoring are also under development.

National Defense↗

Hyperion Studies Of Crop Stress In Mexico

Satellite-based measurements of crop stress could provide much needed information for cropland management, especially in developing countries where other precision agriculture technologies are too expensive (Pierce and Nowak 1999; Robert 2002). For example, detection of areas that are nitrogen deficient or water stressed could guide fertilizer and water management decisions for all farmers within the swath of the satellite. Several approaches have been proposed to quantify canopy nutrient or water content based on spectral reflectance, most of which involve combinations of reflectance in the form of vegetation indices. While these indices are designed to maximize sensitivity to leaf chemistry, variations in other aspects of plant canopies may significantly impact remotely sensed reflectance. These confounding factors include variations in canopy structural properties (e.g., leaf area index, leaf angle distribution) as well as the extent of canopy cover, which determines the amount of exposed bare soil within a single pixel. In order to assess the utility of spectral indices for monitoring crop stress, it is therefore not only necessary to establish relationships at the leaf level, but also to test the relative importance of variations in other canopy attributes at the spatial scale of the remote sensing measurement. In this context, the relative importance of a given attribute will depend on (1) the sensitivity of the reflectance index to variation in the attribute and (2) the degree to which the attribute varies spatially and temporally.

Lobell, David B.↗

Unique contributions of chlorophyll and nitrogen to predict crop photosynthetic capacity from leaf spectroscopy

The photosynthetic capacity or the CO 2 -saturated photosynthetic rate (Vmax), chlorophyll, and nitrogen are closely linked leaf traits that determine C 4 crop photosynthesis and yield. Accurate, timely, rapid, and non-destructive approaches to predict leaf photosynthetic traits from hyperspectral reflectance are urgently needed for high-throughput crop monitoring to ensure food and bioenergy security. Therefore, this study thoroughly evaluated the state-of-the-art physically based radiative transfer models (RTMs), data-driven partial least squares regression (PLSR), and generalized PLSR (gPLSR) models to estimate leaf traits from leaf-clip hyperspectral reflectance, which was collected from maize (Zea mays L.) bioenergy plots with diverse genotypes, growth stages, treatments with nitrogen fertilizers, and ozone stresses in three growing seasons. The results show that leaf RTMs considering bidirectional effects can give accurate estimates of chlorophyll content (Pearson correlation r=0.95), while gPLSR enabled retrieval of leaf nitrogen concentration (r=0.85). Using PLSR with field measurements for training, the cross-validation indicates that V max can be well predicted from spectra (r=0.81). Here, the integration of chlorophyll content (strongly related to visible spectra) and nitrogen concentration (linked to shortwave infrared signals) can provide better predictions of V max (r=0.71) than only using either chlorophyll or nitrogen individually. This study highlights that leaf chlorophyll content and nitrogen concentration have key and unique contributions to V max prediction.

59 BASIC BIOLOGICAL SCIENCES↗

Data from Unique Contributions of Chlorophyll and Nitrogen to Predict Crop Photosynthetic Capacity from Leaf Spectroscopy

The photosynthetic capacity or the CO2-saturated photosynthetic rate (Vmax), chlorophyll, and nitrogen are closely linked leaf traits that determine C4 crop photosynthesis and yield. Accurate, timely, rapid, and non-destructive approaches to predict leaf photosynthetic traits from hyperspectral reflectance are urgently needed for high-throughput crop monitoring to ensure food and bioenergy security. Therefore, this study thoroughly evaluated the state-of-the-art physically based radiative transfer models (RTMs), data-driven partial least squares regression (PLSR), and generalized PLSR (gPLSR) models to estimate leaf traits from leaf-clip hyperspectral reflectance, which was collected from maize (Zea mays L.) bioenergy plots with diverse genotypes, growth stages, treatments with nitrogen fertilizers, and ozone stresses in three growing seasons. The results show that leaf RTMs considering bidirectional effects can give accurate estimates of chlorophyll content (Pearson correlation r=0.95), while gPLSR enabled retrieval of leaf nitrogen concentration (r=0.85). Using PLSR with field measurements for training, the cross-validation indicates that Vmax can be well predicted from spectra (r=0.81). The integration of chlorophyll content (strongly related to visible spectra) and nitrogen concentration (linked to shortwave infrared signals) can provide better predictions of Vmax (r=0.71) than only using either chlorophyll or nitrogen individually. This study highlights that leaf chlorophyll content and nitrogen concentration have key and unique contributions to Vmax prediction.

Biomass Analytics↗

Civil mini-RPA's for the 1980's: Avionics design considerations

A number of remote sensing or surveillance tasks (e.g., fire fighting, crop monitoring) in the civilian sector of our society may be performed in a cost effective manner by use of small remotely piloted aircraft (RPA). This study was conducted to determine equipment (and the associated technology) that is available, and that could be applied to the mini-RPA and to examine the potential applications of the mini-RPA with special emphasis on the wild fire surveillance mission. The operational considerations of using the mini-RPA as affected by government regulatory agencies were investigated. These led to equipment requirements (e.g., infra-red sensors) over and above those for the performance of the mission. A computer technology survey and forecast was performed. Key subsystems were identified, and a distributed microcomputer configuration, that was functionally modular, was recommended. Areas for further NASA research and development activity were also identified.

Karmarkar, J. S.↗

Evaluation of procedures to correct for variable viewing and illumination geometry when observing a non-Lambertian surface through the atmosphere

Data from the Advanced Very High Resolution Radiometer aboard the NOAA polar orbiting satellite are being operationally applied to provide estimates of vegetation cover and/or condition over a large part of the earth by the USDA. The wide scan angle (+ or - 54 deg) of this system permits daily views of the earth when used to its limits. Five-day repetitive coverage is acquired, assuming cloud-free conditions, in current operations which limit the use of the scan to the center + or - 14 deg of swath. While use of the full scan width would provide clear acquisitions frequent enough to monitor crop development and condition even with normal cloudiness, these off-nadir data are made difficult to interpret due to the non-Lambertian nature of the surface, enhanced effect of the atmosphere, inclusion of subpixel and thin invisible clouds in the scene, and differences in illumination across the scene; all of which contribute to variations in observed reflected radiation. Some approaches to provide corrections for these effects are discussed here.

Whitehead, V. S.↗

Optical Reflectance and Fluorescence for Detecting Nitrogen Needs in Zea mays L.

Nitrogen (N) status in field grown corn (Zea mays L.) was assessed using spectral techniques. Passive reflectance remote sensing and, both passive and active fluorescence sensing methods were investigated. Reflectance and fluorescence methods are reported to detect changes in the primary plant pigments (chlorophylls a and b; carotenoids) in higher plant species. As a general rule, foliar chlorophyll a (Chl a) and chlorophyll b (Chl b) usually exist in approx.3:l ratio. In plants under stress, Chl b content is affected before Chl a reductions occur. For reflectance, a version of the chlorophyll absorption in reflectance index (CARI) method was tested with narrow bands from the Airborne Imaging Spectroradiometer for Applications (ASIA). CARI minimizes the effects of soil background on the signal from green canopies. A modified CARI (MCARI) was used to track total Chl a levels in the red dip of the spectrum from the corn canopy. A second MCARI was used to track the auxiliary plant pigments (Chl b and the carotenoids) in the yellow/orange/red edge part of the reflectance spectrum. The difference between these two MCARI indices detected variations in N levels across the field plot canopies using ASIA data. At the leaf level, ratios of fluorescence emissions in the blue, green, red and far-red wavelengths sensed responses that were associated with the plant pigments, and were indicative of energy transfer in the photosynthetic process. N stressed corn stands could be distinguish from those with optimally applied N with fluorescence emission spectra obtained from individual corn leaves. Both reflectance and fluorescence methods are sensitive in detecting corn N needs and may be especially powerful in monitoring crop conditions if both types of information can be combined.

McMurtrey, J. E.↗

Multi-Sensor Distributive On-Line Processing, Visualization, and Analysis Infrastructure for an Agricultural Information System at the NASA Goddard Earth Sciences DAAC

The Goddard Space Flight Center Earth Sciences Data and Information Services Center (GES DISC) Distributed Active Center (DAAC) is developing an Agricultural Information System (AIS), evolved from an existing TRMM On-line Visualization and Analysis System precipitation and other satellite data products and services. AIS outputs will be ,integrated into existing operational decision support system for global crop monitoring, such as that of the U.N. World Food Program. The ability to use the raw data stored in the GES DAAC archives is highly dependent on having a detailed understanding of the data's internal structure and physical implementation. To gain this understanding is a time-consuming process and not a productive investment of the user's time. This is an especially difficult challenge when users need to deal with multi-sensor data that usually are of different structures and resolutions. The AIS has taken a major step towards meeting this challenge by incorporating an underlying infrastructure, called the GES-DISC Interactive Online Visualization and Analysis Infrastructure or "Giovanni," that integrates various components to support web interfaces that ,allow users to perform interactive analysis on-line without downloading any data. Several instances of the Giovanni-based interface have been or are being created to serve users of TRMM precipitation, MODIS aerosol, and SeaWiFS ocean color data, as well as agricultural applications users. Giovanni-based interfaces are simple to use but powerful. The user selects geophysical ,parameters, area of interest, and time period; and the system generates an output ,on screen in a matter of seconds.

Teng, William↗

Solutions Network Formulation Report. Aerosol Polarimetry Sensor Measurements of Diffuse-to-Global Irradiance Ratio for Improved Forecasting of Plant Productivity and Health

Studies have shown that vegetation is directly sensitive to changes in the diffuse-to-global irradiance ratio and that increased percentage of diffuse irradiation can accelerate photosynthesis. Therefore, measurements of diffuse versus global irradiance could be useful for monitoring crop productivity and overall vegetative health as they relate to the total amount of particulates in the air that result from natural disasters or anthropogenic (manmade) causes. While the components of solar irradiance are measured by satellite and surface sensors and calculated with atmospheric models, disagreement exists between the results, creating a need for more accurate and comprehensive retrievals of atmospheric aerosol parameters. Two satellite sensors--APS and VIIRS--show promise for retrieving aerosol properties at an unprecedented level of accuracy. APS is expected to be launched in December 2008. The planned launch date for VIIRS onboard NPP is September 2009. Identified partners include the USDA s ARS, North Carolina State University, Purdue Climate Change Research Center, and the Cooperative Institute for Research in the Atmosphere at Colorado State University. Although at present no formal DSSs (decision support systems) require accurate values of diffuse-to-global irradiance, this parameter is sufficiently important that models are being developed that will incorporate these measurements. This candidate solution is aligned with the Agricultural Efficiency and Air Quality National Applications.

Knowlton, Kelly↗

Evaluating the Utility of Remotely-Sensed Soil Moisture Retrievals for Operational Agricultural Drought Monitoring

Soil moisture is a fundamental data source used by the United States Department of Agriculture (USDA) International Production Assessment Division (IPAD) to monitor crop growth stage and condition and subsequently, globally forecast agricultural yields. Currently, the USDA IPAD estimates surface and root-zone soil moisture using a two-layer modified Palmer soil moisture model forced by global precipitation and temperature measurements. However, this approach suffers from well-known errors arising from uncertainty in model forcing data and highly simplified model physics. Here we attempt to correct for these errors by designing and applying an Ensemble Kalman filter (EnKF) data assimilation system to integrate surface soil moisture retrievals from the NASA Advanced Microwave Scanning Radiometer (AMSR-E) into the USDA modified Palmer soil moisture model. An assessment of soil moisture analysis products produced from this assimilation has been completed for a five-year (2002 to 2007) period over the North American continent between 23degN - 50degN and 128degW - 65degW. In particular, a data denial experimental approach is utilized to isolate the added utility of integrating remotely-sensed soil moisture by comparing EnKF soil moisture results obtained using (relatively) low-quality precipitation products obtained from real-time satellite imagery to baseline Palmer model runs forced with higher quality rainfall. An analysis of root-zone anomalies for each model simulation suggests that the assimilation of AMSR-E surface soil moisture retrievals can add significant value to USDA root-zone predictions derived from real-time satellite precipitation products.

Bolten, John D.↗

Intercomparison of Soil Moisture, Evaporative Stress, and Vegetation Indices for Estimating Corn and Soybean Yields Over the U.S.

This paper presents an intercomparative study of 12 operationally produced large-scale datasets describing soil moisture, evapotranspiration (ET), and or vegetation characteristics within agricultural regions of the contiguous United States (CONUS). These datasets have been developed using a variety of techniques, including, hydrologic modeling, satellite-based retrievals, data assimilation, and survey in-field data collection. The objectives are to assess the relative utility of each dataset for monitoring crop yield variability, to quantitatively assess their capacity for predicting end-of-season corn and soybean yields, and to examine the evolution of the yield-index correlations during the growing season. This analysis is unique both with regards to the number and variety of examined yield predictor datasets and the detailed assessment of the water availability timing on the end-of-season crop production during the growing season. Correlation results indicate that over CONUS, at state-level soil moisture and ET indices can provide better information for forecasting corn and soybean yields than vegetation-based indices such as normalized difference vegetation index. The strength of correlation with corn and soybean yields strongly depends on the interannual variability in yield measured at a given location. In this case study, some of the remotely derived datasets examined provide skill comparable to that of in situ field survey-based data further demonstrating the utility of these remote sensing-based approaches for estimating crop yield.

evapotranspiration↗

Hydrologic and Agricultural Earth Observations and Modeling for the Water-Food Nexus

In a globalizing and rapidly-developing world, reliable, sustainable access to water and food are inextricably linked to each other and basic human rights. Achieving security and sustainability in both requires recognition of these linkages, as well as continued innovations in both science and policy. We present case studies of how Earth observations are being used in applications at the nexus of water and food security: crop monitoring in support of G20 global market assessments, water stress early warning for USAID, soil moisture monitoring for USDA's Foreign Agricultural Service, and identifying food security vulnerabilities for climate change assessments for the UN and the UK international development agency. These case studies demonstrate that Earth observations are essential for providing the data and scalability to monitor relevant indicators across space and time, as well as understanding agriculture, the hydrological cycle, and the water-food nexus. The described projects follow the guidelines for co-developing useable knowledge for sustainable development policy. We show how working closely with stakeholders is essential for transforming NASA Earth observations into accurate, timely, and relevant information for water-food nexus decision support. We conclude with recommendations for continued efforts in using Earth observations for addressing the water-food nexus and the need to incorporate the role of energy for improved food and water security assessments

Food Security↗

The Harmonized Landsat and Sentinel-2 Surface Reflectance Data Set

The Harmonized Landsat and Sentinel-2 (HLS) project is a NASA initiative aiming to produce a VirtualConstellation (VC) of surface reflectance (SR) data acquired by the Operational Land Imager (OLI) and MultiSpectral Instrument (MSI) aboard Landsat 8 and Sentinel-2 remote sensing satellites, respectively. The HLS products are based on a set of algorithms to obtain seamless products from both sensors (OLI and MSI): atmospheric correction, cloud and cloud-shadow masking, spatial co-registration and common gridding, bidirectional reflectance distribution function normalization and spectral bandpass adjustment. Three products are derivedfrom the HLS processing chain: (i) S10: full resolution MSI SR at 10 m, 20 m and 60 m spatial resolutions; (ii)S30: a 30 m MSI Nadir BRDF (Bidirectional Reflectance Distribution Function)-Adjusted Reflectance (NBAR);(iii) L30: a 30 m OLI NBAR. All three products are processed for every Level-1 input products from Landsat 8/OLI (L1T) and Sentinel-2/MSI (L1C). As of version 1.3, the HLS data set covers 10.35 million km2 and spans from first Landsat 8 data (2013); Sentinel-2 data spans from October 2015. The L30 and S30 show a good consistency with coarse spatial resolution products, in particular MODIS Collection 6 MCD09CMG products (overall deviations do not exceed 11%) that are used as a reference for quality assurance. The spatial co-registration of the HLS is improved compared to original Landsat 8 L1T and Sentinel 2A L1C products, for which misregistration issues between multi-temporal data are known. In particular, the resulting computed circular errors at 90% for the HLS product are 6.2 m and 18.8 m, for S10 and L30 products, respectively. The main known issue of the current data set remains the Sentinel-2 cloud mask with many cloud detection omissions. The cross-comparison with MODIS was used to flag products with most evident non-detected clouds. A time series outlier filtering approach is suggested to detect remaining clouds. Finally, several time series are presented to highlight the high potential of the HLS data set for crop monitoring.

Landsat Sentinel-2↗

An Update on Global Satellite-Based Precipitation Products and Services at NASA GES DISC

The NASA Goddard Earth Sciences Data and Information Services Center (GES DISC) is home to major NASA satellite precipitation measurement missions including the Tropical Rainfall Measuring Mission (TRMM) and the Global Precipitation Measurement (GPM) as well as other NASA projects. Accurate and timely available global and regional precipitation products play an important role in research and applications around the world. The GES DISC provides near-real-time, near-global precipitation products (e.g.IMERG) to support a wide variety of interdisciplinary research and operational activities including flood modeling, landslides, crop monitoring and assessment, vector-borne diseases, etc. Climate data record products (e.g.GPCP3) are essential for climate research, assessment, model evaluation and applications. To facilitate data access and exploration, the GES DISC has developed data services such asGiovanni, an online visualization and analysis tool for easy access to over 2000 satellite- and model-based variables. Established in the mid 1980s, the GES DISC also distributes data in other disciplines including hydrology, atmospheric chemistry, atmospheric dynamics, etc. In this presentation, we will present an update on global precipitation products and data services including the new IMERG V06B suite, the latest version of GPCP (Version 3) and value-added data subsetting services (L34RS, L2S).

Liu, Zhong↗

Calculator for Agricultural Water Use Fractions in California

Improved quantification of agricultural water use efficiency is a primary focus of California's Water Conservation Act. The California Department of Water Resources (CDWR), after extensive stakeholder consultation, has published methods and indicators to help identify opportunities for improved efficiency of irrigation management at various spatial scales. Additional 2017 legislation directs water suppliers to quantify water use efficiency using the CDWR metrics to support preparation of agricultural water management plans. The IrriQuest calculator derives the Crop Consumptive Use Fraction (CCUF), a foundational metric relating seasonal crop evapotranspiration (ET) to total applied water. Satellite normalized difference vegetation index (NDVI) data are used to develop fractional canopy cover timeseries. Additional key inputs include daily reference ET, irrigation volume, irrigation method, precipitation, soil texture and crop type. IrriQuest estimates of seasonal crop ET show less than 10% mean absolute error compared to ground-based measurements of several annual and perennial crops monitored by sensor deployment in commercial fields. Two additional indicators build on CCUF. The Agronomic Water Use Fraction adds consideration of water applied for beneficial purposes such as pre-plant soil preparation, soil salinity management, and climate control. Total Water Use Fraction additionally accounts for water applied for environmental purposes such as maintenance of wetland and riparian habitat. A convenient on-line portal is under development for CCUF estimation and a standalone spreadsheet is available for computation of all three use fractions.

Calculator↗

Comparison of Multivariate Time Series Prediction Techniques for Emulating Noah-LSM Soil Moisture Outputs

Land surface models are crucial tools for many earth science applications including numerical weather prediction, water resource and crop monitoring, and climatological analysis. Given a set of atmospheric forcings, seasonal data, and static parameters, models like Noah-LSM solve for land surface quantities including skin temperature, sensible heat flux, and soil moisture. While these calculations are theoretically robust, they are often computationally expensive. Since artificial neural networks (ANNs) are universal function approximators, they can learn to emulate the output of a deterministic numerical model given a time series of input forcings, with the learned ANN having substantially shorter execution time. The ANN could efficiently parameterize other models, generate ensembles, and provide first-guess inputs for retrievals. As such, with the goal of developing a model that efficiently mimics the output of Noah-LSM given NLDAS2 forcings on a region covering much of the central US, we examine and compare several neural network architectures for the multi-horizon multivariate time series forecasting problem. Recent literature includes a diverse set of approaches including autoregressive architectures like LSTM and GRU, parametric and non-parametric statistical predictors (ForecastNet and MQRNN), self-attention (LSTM-attention-LSTM), and temporal convovlution (DeepTCN). We implement several of these models for the Noah-LSM prediction task, highlighting the features and challenges for each and providing practical insight on the training process.

Mitchell Dodson↗

Monitoring corn and soybean crop development by remote sensing techniques

A system for spectrally monitoring the stages of crop development for corn and soybeans based upon red and photographic infrared spectral radiances is proposed. The red and photographic infrared spectral radiance, highly correlated with the green leaf area index or green leaf biomass, enable nondestructive monitoring of the crop canopy throughout the growing season. Five distinct periods are apparent which are related to crop development for corn and soybeans.

Tucker, C. J.↗

The commercial use of satellite data to monitor the potato crop in the Columbia Basin

The imaging of potato crops with satellites is described and evaluated in terms of the commercial application of the remotely sensed data. The identification and analysis of the crops is accomplished with multiple images acquired from the Landsat MSS and TM systems. The data are processed on a PC with image-procesing software which produces images of the seven 1024 x 1024 pixel windows which are subdivided into 21 512 x 512 pixel windows. Maximization of imaged data throughout the year aids in the identification of crop types by IR reflectance. The classification techniques involve the use of six or seven spectral classes for particular image dates. Comparisons with ground-truth data show good agreement; for example, potato fields are identified correctly 90 percent of the time. Acreage estimates and crop-condition assessments can be made from satellite data and used for corrective agricultural action.

Waddington, George R., Jr.↗