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At least 55 records · Page 3

Thermal quench induced by a composite pellet-produced plasmoid

Injecting shattered pellets is the critical concept of the envisaged ITER disruption mitigation system (DMS). Rapid deposition of large amounts of material should presumably result in controlled cooling of the entire plasma. A considerable transfer of thermal energy from the electrons of the background plasma to the ions accompanies a localized material injection due to the ambipolar expansion along the magnetic field line of the cold and dense plasmoid produced by the ablated pellet. Radiation initially plays the dominant role in the energy balance of a composite plasmoid containing high-Z impurities. A competition between the ambipolar expansion and the radiative losses defines the Thermal Quench scenario, including the amount of pre-quench thermal energy radiated on a short collisional timescale—possibly detrimental for the plasma-facing components. The present work quantifies plasmoid energy balance for disruption mitigation parameters. For pure hydrogen injection, up to 90% of the pre-pellet electron thermal energy may go to the newly injected ions. We also demonstrate that a moderate high-Z impurity content within the plasmoid can reduce highly localized radiation at the beginning of the expansion. The thermal energy will then dissipate on the much longer ion collisional timescale, which would be attractive for ITER DMS.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

Heating and acceleration of the solar wind

The dynamics of the expanding corona are discussed emphasizing the physical processes which accelerate the plasma as it flows away from the Sun. The solar wind plays a dominant role in the energy balance of the part of the corona in which it originates. The wind acceleration processes, in large part, with the mechanisms that transport energy to the corona in the first place.

Kopp, R. A.↗

Middle atmosphere dynamics and composition

Aspects of the dynamics and composition of that region of the earth atmosphere lying above the tropopause but below 100 km are considered as they relate to processes at middle and high latitudes. The physics of the summer to winter reversal of the direction of the middle atmosphere jet is discussed, along with the effects of planetary waves on the mean zonal flow, which occasionally produce sudden stratosphere warming events. The chemistry of the two middle atmospheric trace constituents ozone and nitric oxide, which play dominant roles in atmospheric radiation balance and lower ionospheric structure, respectively, is then examined, and the importance of transport in determining their distribution is pointed out.

Geller, M. A.↗

The Distribution of Ozone in the Early Stages of Polar Vortex Development

Previous analysis has shown that the distribution of O3 at high northern latitudes in the lower-to-middle stratosphere at the beginning of the winter season, 1999-2000 has a characteristic distribution, which is consistent between in situ and satellite measurements [Kawa et al., The Interaction Between Dynamics and Chemistry of Ozone in the Set-up Phase of the Northern Hemisphere Polar Vortex, submitted manuscript, 2001 ]. Initial O3 profiles in the vortex are similar to each other and are quite different from outside the vortex at the same latitude and also from a zonal mean climatology. In the vortex, O3 is nearly constant from 500 to above 800 K with a value at 3 ppmv +/- approx.10%. Values outside the vortex are up to a factor of 2 higher and increase significantly with potential temperature. The seasonal time series of POAM data shows that relatively low O3 mixing ratios, which characterize the vortex in late fall, are already present at high latitudes at the end of summer in September before the vortex circulation sets up. This suggests a possible feedback role between O3 chemistry and the formation of the vortex, which is dominated by the seasonal radiation balance. Here we show that these characteristic O3 distributions are consistent from year to year and between the hemispheres. We will attempt to determine whether variations in fall vortex O3 are related in any way to O3 abundances and vortex structure later during winter and into spring.

Kawa, S. R.↗

Albedo enhancement and perturbation of radiation balance due to stratospheric aerosols

The effect of stratospheric aerosols on the earth's monthly zonal radiation balance is investigated using a model layer consisting of 75% H2SO4, which is the primary constituent of the background aerosol layer. The reduction in solar energy absorbed by the earth-atmosphere system is determined through the albedo sensitivity, defined here as the change in albedo per unit mid-visible optical depth of the aerosol layer. The optically thin approximation is used in conjunction with the Henyey-Greenstein phase function for scattering to simplify computations. Satellite derived planetary albedos are used as the frame of reference about which the change in albedo is computed. An infrared radiative transfer model is used to estimate the increased greenhouse effect attributed to the aerosol layer. The infrared heating tends to compensate for the albedo effect in altering the radiation balance. The results indicate that the dominant influence of the thin model stratospheric aerosol layer is an increased reflection of solar energy all over the globe except for the polar-winter region, but the change in the radiation balance is seen to be uniform and small equatorwards of 50%.

HARSHVARDHAN↗

Perturbation of the zonal radiation balance by a stratospheric aerosol layer

The effect of stratospheric aerosols on the earth's monthly zonal radiation balance is investigated using a model layer consisting of 75% H2SO4, the primary constituent of the background aerosol layer. The reduction in solar energy absorbed by the earth-atmosphere system is determined through the albedo sensitivity, and the optically thin approximation is used in conjunction with the Henyey-Greenstein phase function for scattering. An infrared radiative transfer model is used to estimate the increased greenhouse effect from the aerosol layer, and the infrared heating compensates for the albedo effect in altering the radiation balance. The results indicate that the dominant influence of the thin model stratospheric aerosol layer is an increased reflection of solar energy all over the globe except for the polar-winter region, but the change in the radiation balance is uniform and small equatorward of 50 deg.

Harshvardhan, MR.↗

Dominant modes via model error

Obtaining a reduced model of a stable mechanical system with proportional damping is considered. Such systems can be conveniently represented in modal coordinates. Two popular schemes, the modal cost analysis and the balancing method, offer simple means of identifying dominant modes for retention in the reduced model. The dominance is measured via the modal costs in the case of modal cost analysis and via the singular values of the Gramian-product in the case of balancing. Though these measures do not exactly reflect the more appropriate model error, which is the H2 norm of the output-error between the full and the reduced models, they do lead to simple computations. Normally, the model error is computed after the reduced model is obtained, since it is believed that, in general, the model error cannot be easily computed a priori. The authors point out that the model error can also be calculated a priori, just as easily as the above measures. Hence, the model error itself can be used to determine the dominant modes. Moreover, the simplicity of the computations does not presume any special properties of the system, such as small damping, orthogonal symmetry, etc.

Yousuff, A.↗

Combining GWAS and population genomic analyses to characterize coevolution in a legume‐rhizobia symbiosis

Abstract The mutualism between legumes and rhizobia is clearly the product of past coevolution. However, the nature of ongoing evolution between these partners is less clear. To characterize the nature of recent coevolution between legumes and rhizobia, we used population genomic analysis to characterize selection on functionally annotated symbiosis genes as well as on symbiosis gene candidates identified through a two‐species association analysis. For the association analysis, we inoculated each of 202 accessions of the legume host Medicago truncatula with a community of 88 Sinorhizobia (Ensifer) meliloti strains. Multistrain inoculation, which better reflects the ecological reality of rhizobial selection in nature than single‐strain inoculation, allows strains to compete for nodulation opportunities and host resources and for hosts to preferentially form nodules and provide resources to some strains. We found extensive host by symbiont, that is, genotype‐by‐genotype, effects on rhizobial fitness and some annotated rhizobial genes bear signatures of recent positive selection. However, neither genes responsible for this variation nor annotated host symbiosis genes are enriched for signatures of either positive or balancing selection. This result suggests that stabilizing selection dominates selection acting on symbiotic traits and that variation in these traits is under mutation‐selection balance. Consistent with the lack of positive selection acting on host genes, we found that among‐host variation in growth was similar whether plants were grown with rhizobia or N‐fertilizer, suggesting that the symbiosis may not be a major driver of variation in plant growth in multistrain contexts.

59 BASIC BIOLOGICAL SCIENCES↗

Development of a molecularly informed biogeochemical framework for reactive transport modeling of subsurface carbon inventories, transformations and fluxes (Final Report)

The overall objective of the project was to combine new molecular-level characterization strategies with soil carbon flux measurements to develop and evaluate model representations of subsurface carbon cycling. We expanded on existing studies in the East River watershed, Colorado, in collaboration with the Berkeley Lab Watershed Function Scientific Focus Area (SFA), SLAC Groundwater Quality SFA, and Rocky Mountain Biological Laboratory (RMBL) to develop an elevation and vegetation gradient that is now the subject of long-term monitoring by the USGS. To achieve the overall objective, we combined field studies of soil respiration with laboratory analyses, ranging from spectroscopy to incubation studies. This combination of techniques enabled us to develop a new understanding of the drivers of high-elevation soil respiration. In the process, we developed three new modeling approaches that improve our ability to conceptualize and ultimately to represent soil respiration in numerical models. The first approach is a plot-scale transient inverse model that can be used to determine in situ CO 2 production rates from measured concentration profiles and surface fluxes. Application of this method revealed the importance of plant phenology and deep CO 2 production in moderating CO 2 fluxes to the atmosphere. The second modeling approach is a molecular-scale tool that enables spectroscopic and elemental data for carbon speciation to be transformed into functional group abundances, or the ‘SOC-fga model’. This method uniquely enables carbon speciation to be tracked within a reactive transport framework to partition carbon among different pathways and storage zones within the soil. The third modeling tool builds strongly on the previous approaches and captures the microbial processes driving heterotrophic respiration. This ‘dormancy model’ allows the native soil microbial population to respond transiently to the presence or absence of water in order to catalyze carbon respiration. This approach was also compared to the simpler and more widely used first-order model using two experimental datasets with different temporal and spatial resolutions. Our results illustrate that the simpler first order model provides a robust and efficient representation of deep (>1 meter) soil respiration, but that shallow soils, where most respiration occurs, require explicit representation of moisture-dependent activation and dormancy rates. By assessing soil organic carbon turnover at multiple scales, we see a complex array of controls emerge. Atte scale of a hillslope, spatial heterogeneity in soil respiration rates dominates and is uncorrelated with instantaneous soil moisture and plant community. At the profile scale, the balance between plant inputs and water availability is the dominant control. At the microbial to molecular scale, physiological processes associated with carbon use and carbon speciation are important controls. These scale-dependent controls emphasize the need for new modeling approaches that examine their interactions and hierarchies.

54 ENVIRONMENTAL SCIENCES↗

Nitrogen species

Total odd nitrogen, NO(y), may be defined as the sum of all active nitrogen species that interchange photochemically with one another on a time scale of the order of weeks or less. As noted, NO + NO2 reactions dominate the processes controlling the ozone balance in the contemporary stratosphere. The observational data from non-satellite platforms are reviewed. The growth in available satellite data in the past four years is considered. Some of the most important scientific issues are discussed, taking into account new results from atmospheric models (mainly 2-D). The model results are compared with the observational data.

Harries, J. E.↗

A unidimensional model of comet ionosphere structure

The one-dimensional continuity and momentum equations for the plasma formed in the expanding coma of a comet near the sun are studied. An analytic expression for the magnetic field configuration in the presence of outflow, photoionization, dissociative recombination, plasma fluid pressure, and friction between the ions and neutrals is obtained. It is suggested that for a Halley-type comet there will be a region sunward of the nucleus from which the magnetic field is excluded, consistent with Giotto observations. Calculations have been performed for Halley and Giacobini-Zinner type comets, and in the field-free regions it is shown that the dominant terms in the momentum equation balancing the magnetic pressure gradient are the ion neutral friction and the net mass loading momentum gain.

Eviatar, Aharon↗

Limits on detectability of mass loss from cool dwarfs

Recent spectroscopic evidence supports the theoretical expectation that certain cool dwarfs may have stellar winds with M-dot values several orders of magnitude larger than the solar rate. For large enough values of M-dot, the emission from the wind is expected to have a spectrum which, at low enough frequencies, becomes a power law, S(v) about v exp alpha with alpha about 0.7. Data from IRAS and VLA suggest that such a spectrum may in fact occur in certain M dwarfs: a key test of the wind spectrum would be provided if the stars could be detected at lambda about 1 mm. We show that the M-dot required to ensure power-law emission is a few times 10 exp -10 solar mass/yr. With M-dot of this order, fluxes at lambda about 1 mm would be tens of mJy. Using the James Clerk Maxwell Telescope, we have tested this prediction on several stars: the data are suggestive but are near the limits of detection. Confirmation of our estimates will be important for evolution and for interstellar medium (ISM) physics: if even a few percent of all M dwarfs are losing mass at the above rates, the mass balance of the ISM will be dominated by M dwarfs.

Mullan, D. J.↗

Preliminary Assessment of JERS-1 SAR to Discriminating Boreal Landscape Features for the Boreal Forest Mapping Project

This paper presents an overview of the JERS-1 North American Boreal Forest Mapping Project and a preliminary assessment of JERS-1 SAR imagery for application to discriminating features applicable to boreal landscape processes. The present focus of the JERS-1 North American Boreal Forest Mapping Project is the production of continental scale wintertime and summertime SAR mosaics of the North American boreal forest for distribution to the science community. As part of this effort, JERS-1 imagery has been collected over much of Alaska and Canada during the 1997-98 winter and 1998 summer seasons. To complete the mosaics, these data will be augmented with data collected during previous years. These data will be made available to the scientific community via CD ROM containing these and similar data sets compiled from companion studies of Asia and Europe. Regional landscape classification with SAR is important for the baseline information it will provide about distribution of woodlands, positions of treeline, current forest biomass, distribution of wetlands, and extent of major rivercourses. As well as setting the stage for longer term change detection, comparisons across several years provides additional baseline information about short-term landscape change. Rapid changes, including those driven by fire, permafrost heat balance, flooding, and insect outbreaks can dominate boreal systems. We examine JERS-1 imagery covering selected sites in Alaska and Canada to assess quality and applicability to such relevant ecological and hydrological issues. The data are generally of high quality and illustrate many potential applications. A texture-based classification scheme is applied to selected regions to assess the applicability of these data for distinguishing distribution of such landcover types as wetland, tundra, woodland and forested landscapes.

McDonald, Kyle↗

The Effect of Europa and Enceladus Analog Seawater Composition on Isotopic Measurements of Volatile CO2

Science goals for icy ocean worlds missions include characterizing the chemical compositionof the surface and interior using remote sensing and in situ techniques. The next class of flightmass spectrometers for these missions will obtain compositional identifications and isotope ratiomeasurements of volatiles evolved from the ice surface (exosphere) and plumes. These massspectra will be combined with data from other flight instruments to infer the composition of theinterior from volatiles. To ensure accurate interpretation of these measurements, it is critical toverify whether the fundamental assumption that volatiles observed in icy ocean world exospheresor plumes will be a direct reflection of the sub-ice ocean. The present study evaluates whether isotopologues from an initial CO2 gas fractionate by interacting with seawater (brine) of varyingsalt composition and concentration. δ13CCO2 are affected by the pH of the brine and subsequentspeciation of {CO2}, where {CO2} represents the combination of CO2, H2CO3, HCO3-, and CO32-.{CO2} for low pH brines hypothesized for Europa will preferentially speciate as CO2. Analyzedδ13CCO2 for low pH brines are within error of the original δ13CCO2, demonstrating that volatile CO2in a low pH system will be a direct reflection of the original CO2. However, Europa’s radiativeenvironment and rapid depressurization due to plume ejection may impose fractionation effects.In contrast, high pH systems relevant to Enceladus or a more alkaline Europa are expected toform all carbonate species, while favoring speciation as HCO3-. High pH brines in theseexperiments include both an original CO2 gas and an isotopically distinct HCO3- (from NaHCO3salt). These alkaline experiments demonstrate that δ13CCO2 values are highly variable, and dependon the concentration of the dominant carbonate species, (Na)HCO3-. Mass balance estimatesindicate that measured δ13CCO2 is a thermodynamically predictable mixture of both carbonsources, suggesting that measurements of δ13C at Enceladus would directly reflect of the sourcesof CO2 and carbonate buffering in the ocean. δ18O measurements for CO2 interacting with KCland MgCl2 follow established models for δ18O-ionic strength. CO2 interacting with MgSO4,Na2SO4, and NaCl demonstrate an offset from established δ18O-ionic strength models dependingon the concentration of initial CO2. These results suggest that current predictive models for δ18Oin brines need to be resolved for changing concentrations of CO2

Ocean Worlds↗

Scale Analysis of Moist Thermodynamics in a Simple Model and the Relationship Between Moisture Modes and Gravity Waves

Observations and theory of convectively-coupled equatorial waves suggest that they can be categorized into two distinct groups. Moisture modes are waves whose thermodynamics are governed by moisture fluctuations. The thermodynamics of the gravity wave group, on the other hand, are rooted in buoyancy (temperature) fluctuations. On the basis of scale analysis it is found that a simple nondimensional parameter –akin to the Rossby number– can explain the processes that lead to the existence of these two groups. This parameter, defined as Nmode, indicates that moisture modes arise when anomalous convection lasts sufficiently long so that dry gravity waves eliminate the temperature anomalies in the convective region, satisfying weak temperature gradient (WTG) balance. This process causes moisture anomalies to dominate the distribution of moist enthalpy (or moist static energy), and hence the evolution of the wave. Conversely, convectively-coupled gravity waves arise when anomalous convection eliminates the moisture anomalies more rapidly than dry gravity waves can adjust the troposphere towards WTG balance, causing temperature to govern the moist enthalpy distribution and evolution. Spectral analysis of reanalysis data indicates that slowly-propagating waves (cp ~ 3 m s-1) are likely to be moisture modes while fast waves (cp ~ 30 m s-1) exhibit gravity wave behavior, with "mixed moisture-gravity" waves existing in between. While these findings are obtained from a highly idealized framework, it is hypothesized that they can be extended to understand simulations of convectively-coupled waves in GCMs and the thermodynamics of more complex phenomena.

Angel F Adames↗

Dominant modes of mechanical systems

To obtain a reduced model of a mechanical system, one can identify the dominant modes and retain those as the reduced model. Two widely used schemes for selection of dominant modes are modal cost analysis (MCA) and balancing, but neither of these methods guarantees that the model error is small, where model error measures the difference between the output of the full model and the output of the reduced model. The authors introduce a set of coordinates called pseudo uncorrelated modal coordinates (PUnc) that can be used in conjunction with component cost analysis to select dominant modes yielding a reduced model with minimum model error. Furthermore, unlike MCA and balancing, the accuracy of the reduced model (the model error) in PUnc coordinates can be evaluated before reduction.

Breida, M.↗

Characterization of a Laminate Flat Plate Diffusion Flame in Microgravity using PIV, Visible and CH Emissions

Motivated by fire safety concerns and the advent of long-term micro-gravity facilities, a cooperative program has been developed to study the mechanisms and material properties that control flow assisted (co-current) flame spread. This program has used as a common fire scenario a reacting steady-state boundary layer. Preliminary studies explored the aerodynamics of a reacting boundary layer by simulating a condensed fuel by means of a gas burner. Stability curves for ethane air flames were obtained and different burning regimes were identified. An important feature of this study was the independent identification of the different mechanisms leading to the instability of the flow. It was observed that fuel injection velocity and thermal expansion independently contributed to the separation of the flow at the leading edge of the burner. The occurrence of separation resulted in complex three-dimensional flow patterns that have a dominant effect on critical fire safety parameters such as the stand-off distance and flame length. This work was extended to a solid fuel (PMMA) leading to a Sounding Rocket experiment (Mini-Texus-6). The solid phase showed similar flow patterns, mostly present at low flow velocities (<100 mm/s) but the results clearly demonstrated that the thermal balance at the pyrolyzing fuel surface is the dominant mechanism that controls both stand-off distance and flame length. This thermal balance could be described in a global manner by means of a total mass transfer or "B" number. This "B" number incorporates surface re-radiation, radiative feedback and in-depth heat conduction as first prescribed by Emmons. The mass transfer number becomes the single parameter that determines the evolution of these fire safety variables (flame length, stand-off distance) and therefore can be used as a ranking criterion to assess the flammability of materials. The particular configuration is representative of the NASA upward flame spread test (Test 1) therefore this approach can be used in the interpretation of the results obtained from this test. Nevertheless, complete validation of this approach has not been fully achieved due, mainly because all the measurements necessary to compare with the theoretical predictions have not been obtained. Following these studies two different directions have been taken. The first attempts to elucidate the details of the gas phase combustion reaction and the associated flow field by means of quantitative and qualitative measurements. The second approach, a more practical one, is to apply this methodology to the assessment of material flammability. The former is currently being conducted with a gas burner because it allows for easier control and longer experimentation time. The results obtained so far will be presented in more detail. The latter is a new program therefore only a brief summary of the objectives will be presented.

Joulain, P.↗

Nucleation and Growth According to Lysozyme

How does one take a molecule, strongly asymmetric in both shape and charge distribution, and assemble it into a crystal? We propose a model for the nucleation and crystal growth process for tetragonal lysozyme that may be very germane to other monomeric proteins. The first species formed is postulated to be a dimer. Through repeating associations involving the same intermolecular interactions this becomes the 4(sub 3) helix, that in turn serves as the basic unit for nucleation and crystal growth. High salt attenuates surface charges while promoting hydrophobic interactions. Symmetry facilitates helix self-association. Assembly stability is enhanced when a four helix structure is obtained, with each bound to two neighbors. Only two unique interactions are required. The first are those for helix formation, where the dominant interaction is the intermolecular bridging anion. The second is the anti-parallel side-by-side helix-helix interaction, guided by alternating pairs of symmetry related salt bridges along each side. At this stage all eight unique positions of the P4(sub 3)2(sub 1)2(sub 1) unit cell are filled. From the above, the process is one of a) attenuating the most strongly interacting groups, such that b) the molecules begin to self-associate in defined patterns, so that c) symmetry is obtained, which d) propagates as a growing crystal. Simple and conceptually obvious in hindsight, this tells much about what we are empirically doing when we crystallize macromolecules. By adjusting the solution parameters we are empirically balancing the intermolecular interactions, preferentially attenuating the dominant strong (for lysozyme the charged groups) while strengthening the lesser strong (hydrophobic) interactions. Lysozyme is atypical in the breadth of its crystallization conditions; many proteins only crystallize under narrowly defined conditions, pointing to the criticality of the empirical balancing process. Lack of a singularly defined association pathway leads to formation of multiple species, i.e., amorphous precipitation. Weak interactions, such as hydrogen bonds, are promiscuous, serving to strengthen rather than define specific interactions. Participation in an interaction sequesters that surface from subsequent interactions, and we expect the strongest bonds to form first. When two molecules self associate the resulting species will have an axis of symmetry. Subsequent interactions between two associated species having equivalent interactions will also have symmetry. Only a few unique sets of interactions are required to give any of the commonly found space groups for monomeric proteins. This model and what it suggests will be discussed.

Pusey, Marc L.↗