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All sourcesNASA NTRSDOE OSTI
DOE OSTI2024

A giant virus infecting the amoeboflagellate Naegleria

Giant viruses (Nucleocytoviricota) are significant lethality agents of various eukaryotic hosts. Although metagenomics indicates their ubiquitous distribution, available giant virus isolates are restricted to a very small number of protist and algal hosts. Here we report on the first viral isolate that replicates in the amoeboflagellate Naegleria. This genus comprises the notorious human pathogen Naegleria fowleri, the causative agent of the rare but fatal primary amoebic meningoencephalitis. We have elucidated the structure and infection cycle of this giant virus, Catovirus naegleriensis (a.k.a. Naegleriavirus, NiV), and show its unique adaptations to its Naegleria host using fluorescence in situ hybridization, electron microscopy, genomics, and proteomics. Naegleriavirus is only the fourth isolate of the highly diverse subfamily Klosneuvirinae, and like its relatives the NiV genome contains a large number of translation genes, but lacks transfer RNAs (tRNAs). NiV has acquired genes from its Naegleria host, which code for heat shock proteins and apoptosis inhibiting factors, presumably for host interactions. Notably, NiV infection was lethal to all Naegleria species tested, including the human pathogen N. fowleri. This study expands our experimental framework for investigating giant viruses and may help to better understand the basic biology of the human pathogen N. fowleri.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2026

Vicennial metagenomic time series unveils evolutionary dynamics of giant viruses in a freshwater ecosystem

Giant viruses play crucial ecological roles in aquatic ecosystems, yet their evolutionary dynamics in response to environmental changes, particularly in freshwater environments, are not well understood. We analyzed a 20-year time series (2000-2019) of 471 co-assembled metagenomes from Lake Mendota (USA) to reconstruct 1512 giant virus metagenome-assembled genomes, providing insights into viral genome evolution. Viruses in the order Imitervirales dominate the virome, remaining consistent across seasons and years. Our findings reveal gene duplication (23% of genes) and horizontal gene transfer (29% of genes) as key drivers of genomic innovation. A co-occurrence network analysis indicates increased virus-host interactions following the introduction of an invasive predatory zooplankton in 2009, highlighting potential hosts in Bigyra, Perkinsea, and Euglenozoa. While single nucleotide polymorphism analysis shows predominantly purifying selection in viral genes, there is a significant increase in positively selected genes post-invasion, particularly those related to infection. Comparative evolutionary analyses reveal that giant viruses exhibit genome-wide substitution rates similar to co-occurring bacteria but significantly slower than smaller dsDNA phages, suggesting both stability and adaptability. Our study demonstrates that freshwater giant viruses employ various evolutionary strategies to respond to environmental change. These results underscore their significant yet often underappreciated role in freshwater ecosystem dynamics.

Vasquez, Yumary M↗
DOE OSTI2022

In-situ tunable giant electrical anisotropy in a grating gated AlGaN/GaN two-dimensional electron gas.

Materials with in-plane electrical anisotropy have great potential for designing artificial synaptic devices. However, natural materials with strong intrinsic in-plane electrical anisotropy are rare. We introduce a simple strategy to produce extremely large electrical anisotropy via grating gating of a semiconductor two-dimensional electron gas (2DEG) of AlGaN/GaN. We show that periodically modulated electric potential in the 2DEG induces in-plane electrical anisotropy, which is significantly enhanced in a magnetic field, leading to an ultra large electrical anisotropy. This is induced by a giant positive magnetoresistance and a giant negative magnetoresistance under two orthogonally oriented in-plane current flows, respectively. This giant electrical anisotropy is in situ tunable by tailoring both the grating gate voltage and the magnetic field. Our semiconductor device with controllable giant electrical anisotropy will stimulate new device applications, such as multi-terminal memtransistors and bionic synapses.

36 MATERIALS SCIENCE↗
DOE OSTI2021

Prospects for Galactic and stellar astrophysics with asteroseismology of giant stars in the TESS continuous viewing zones and beyond

ABSTRACT The NASA Transiting Exoplanet Survey Satellite (NASA-TESS) mission presents a treasure trove for understanding the stars it observes and the Milky Way, in which they reside. We present a first look at the prospects for Galactic and stellar astrophysics by performing initial asteroseismic analyses of bright (G < 11) red giant stars in the TESS southern continuous viewing zone (SCVZ). Using three independent pipelines, we detect νmax and Δν in 41 per cent of the 15 405 star parent sample (6388 stars), with consistency at a level of $\sim \! 2{{\ \rm per\ cent}}$ in νmax and $\sim \! 5{{\ \rm per\ cent}}$ in Δν. Based on this, we predict that seismology will be attainable for ∼3 × 105 giants across the whole sky and at least 104 giants with ≥1 yr of observations in the TESS-CVZs, subject to improvements in analysis and data reduction techniques. The best quality TESS-CVZ data, for 5574 stars where pipelines returned consistent results, provide high-quality power spectra across a number of stellar evolutionary states. This makes possible studies of, for example, the asymptotic giant branch bump. Furthermore, we demonstrate that mixed ℓ = 1 modes and rotational splitting are cleanly observed in the 1-yr data set. By combining TESS-CVZ data with TESS-HERMES, SkyMapper, APOGEE, and Gaia, we demonstrate its strong potential for Galactic archaeology studies, providing good age precision and accuracy that reproduces well the age of high [α/Fe] stars and relationships between mass and kinematics from previous studies based on e.g. Kepler. Better quality astrometry and simpler target selection than the Kepler sample makes this data ideal for studies of the local star formation history and evolution of the Galactic disc. These results provide a strong case for detailed spectroscopic follow-up in the CVZs to complement that which has been (or will be) collected by current surveys.

Mackereth, J. Ted↗
DOE OSTI2024

Nature versus nurture: distinguishing effects from stellar processing and chemical evolution on carbon and nitrogen in red giant stars

ABSTRACT The surface [C/N] ratios of evolved giants are strongly affected by the first dredge-up (FDU) of nuclear-processed material from stellar cores. C and N also have distinct nucleosynthetic origins and serve as diagnostics of mixing and mass-loss. We use subgiants to find strong trends in the birth [C/N] with [Fe/H], which differ between the low-α and high-α populations. We demonstrate that these birth trends have a strong impact on the surface abundances after the FDU. This effect is neglected in current stellar models, which use solar-scaled C and N. We map out the FDU as a function of evolutionary state, mass, and composition using a large and precisely measured asteroseismic data set in first-ascent red giant branch (RGB) and core He-burning, or red clump (RC), stars. We describe the domains where [C/N] is a useful mass diagnostic and find that the RC complements the RGB and extends the range of validity to higher mass. We find evidence for extra mixing on the RGB below [Fe/H] = −0.4, matching literature results, for high-α giants, but there is no clear evidence of mixing in the low-α giants. The predicted signal of mass-loss is weak and difficult to detect in our sample. We discuss implications for stellar physics and stellar population applications.

Roberts, John D. (ORCID:0000000228545796)↗
DOE OSTI2024

Giant Graviton Expansion from Bubbling Geometry: Discreteness from Quantized Geometry

The superconformal index of half-BPS states in N = 4 supersymmetric Yang-Mills with gauge group U⁡(N) admits an expansion in terms of giant gravitons, J N (q) = J ∞ ⁡(q)⁢Σ$^{∞}_{m=0}$ q m⁢N ⁢ J^ m ⁡(q), where m is the number of giant gravitons and J ∞ ⁡(q) is the graviton index. The expansion can be viewed as the implementation of trace relations for finite N. We derive this expansion directly in supergravity from the class of half-BPS solutions due to Lin, Lunin, and Maldacena in type IIB supergravity. The moduli space of these configurations can be quantized using covariant quantization methods. We show how this quantization leads to the precise expression for the expansion in terms of giant gravitons. Our proposal provides a derivation of the giant graviton expansion directly in terms of quantized supergravity degrees of freedom, and it recovers discrete data via quantum geometries that are classically nonsmooth.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗
DOE OSTI2023

Generalized Aerosol/Chemistry Interface (GIANT): A Community Effort to Advance Collaborative Science across Weather and Climate Models

Atmospheric aerosol and chemistry modules are key elements in Earth system models (ESMs), as they predict air pollutant concentrations and properties that can impact human health, weather, and climate. The current uncertainty in climate projections is partly due to the inaccurate representation of aerosol direct and indirect forcing. Aerosol/chemistry parameterizations used within ESMs and other atmospheric models span large structural and parameter uncertainties that are difficult to assess independently of their host models. Moreover, there is a strong need for a standardized interface between aerosol/chemistry modules and the host model to facilitate portability of aerosol/chemistry parameterizations from one model to another, allowing not only a comparison between different parameterizations within the same modeling framework, but also quantifying the impact of different model frameworks on aerosol/chemistry predictions. To address this need, we have initiated a new community effort to coordinate the construction of a Generalized Aerosol/Chemistry Interface (GIANT) for use across weather and climate models. We aim to organize a series of community workshops and hackathons to design and build GIANT, which will serve as the interface between a range of aerosol/chemistry modules and the physics and dynamics components of atmospheric host models. GIANT will leverage ongoing efforts at the U.S. modeling centers focused on building next-generation ESMs and the international AeroCom initiative to implement this common aerosol/chemistry interface. GIANT will create transformative opportunities for scientists and students to conduct innovative research to better characterize structural and parametric uncertainties in aerosol/chemistry modules, and to develop a common set of aerosol/chemistry parameterizations.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2022

Giant kelp genetic monitoring before and after disturbance reveals stable genetic diversity in Southern California

Given the impacts of climate change and other anthropogenic stressors on marine systems, there is a need to accurately predict how species respond to changing environments and disturbance regimes. The use of genetic tools to monitor temporal trends in populations gives ecologists the ability to estimate changes in genetic diversity and effective population size that may be undetectable by traditional census methods. Although multiple studies have used temporal genetic analysis, they usually involve commercially important species, and rarely sample before and after disturbance. In this study, we run a temporal analysis of giant kelp, Macrocystis pyrifera , genetic diversity over the scope of 10 years (2008-2018) using the same microsatellite marker panel to assess the genetic consequences of disturbance in several populations of giant kelp ( Macrocystis pyrifera ) in the Southern California Bight. The study is a rare pre- and post-disturbance microsatellite analysis that included declines to giant kelp caused by the 2015/16 El Nino Southern Oscillation event. We used canopy biomass estimated by remote sensing (Landsat) to quantify the extent of disturbance to kelp beds, and sea surface temperature data to understand how kelp was pushed towards its temperature limits during this period. Despite prolonged periods with decreased canopy at several sites, no changes in genetic structure and allelic richness were observed. We argue that giant kelp in the region is best described as a “patchy population” system where true extinctions are rare. We discuss how deep refugia of subsurface sporophytes and cryptic microscopic life stages could have kept genetic diversity through disturbance. Given the increasing effects of climate change and uncertainty in modeling impacts of species with cryptic life history stages, we suggest further investigation to reveal the role such stages play in species resilience. Genetic monitoring studies of sites selected by remote census demographic and climate surveys should be continued in the future given the predicted impacts of climate change.

Klingbeil, III, William H.↗
DOE OSTI2025

The mutation atlas of giant kelp (Macrocystis pyrifera): a mutation database resource for natural knockouts

Giant kelp (Macrocystis pyrifera) is a paramount species of immense ecological and economic importance. It forms dense underwater forests, providing crucial habitat and serving as a foundation species for diverse marine ecosystems. Understanding the genetics of giant kelp is essential for conservation and sustainable farming, safeguarding these valuable ecosystems and their benefits. By analyzing mutations based on their impact, we can gain insights into the potential functional consequences and implications for the organism, helping to identify critical genes or regions that may play a significant role in adaptation, development, and environmental response. To achieve this, we annotated the effects and impact of spontaneous mutations in 559 giant kelp individuals from four different populations. We found over 15.9 million mutations in genes of giant kelp, and classified them into modifier, low, moderate, and high impact depending on their predicted effects. The creation of this mutation effect database, attached to the seedbank of these individuals, offers several applications, including enhancing breeding programs, aiding genetic engineering with naturally occurring mutations, and developing strategies to mitigate the impact of environmental changes.

Plant Sciences↗
DOE OSTI2021

The Role of Early Giant-planet Instability in Terrestrial Planet Formation

The terrestrial planets are believed to have formed by violent collisions of tens of lunar- to Mars-size protoplanets at time t < 200 Myr after the protoplanetary gas disk dispersal (t {sub 0}). The solar system giant planets rapidly formed during the protoplanetary disk stage and, after t {sub 0}, radially migrated by interacting with outer disk planetesimals. An early (t < 100 Myr) dynamical instability is thought to have occurred with Jupiter having gravitational encounters with a planetary-size body, jumping inward by ∼0.2–0.5 au, and landing on its current, mildly eccentric orbit. Here we investigate how the giant-planet instability affected the formation of the terrestrial planets. We study several instability cases that were previously shown to match many solar system constraints. We find that resonances with giant planets help to remove solids available for accretion near ∼1.5 au, thus stalling the growth of Mars. It does not matter, however, whether the giant planets are placed on their current orbits at t {sub 0} or whether they realistically evolve in one of our instability models; the results are practically the same. The tight orbital spacing of Venus and Earth is difficult to reproduce in our simulations, including cases where bodies grow from a narrow annulus at 0.7–1 au, because protoplanets tend to spread radially during accretion. The best results are obtained in the narrow-annulus model when protoplanets emerging from the dispersing gas nebula are assumed to have (at least) the mass of Mars. This suggests efficient accretion of the terrestrial protoplanets during the first ∼10 Myr of the solar system.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2026

Relativistic Magnetohydrodynamic Simulations of Giant Magnetar Bursts

Gradual crustal deformation can generate strongly twisted magnetic fields around magnetars, potentially triggering giant flares with total energies exceeding 10 44 erg. In this letter, we present the first relativistic magnetohydrodynamic simulation of a surface shear-driven magnetar eruption, capturing reconnection-driven plasma heating, the ejection of relativistically hot plasma, and the formation of a hot fireball confined within the inner magnetosphere. We find that magnetic reconnection in the equatorial current sheet launches a hot trailing outflow capable of powering the initial spike observed in giant flares, while simultaneously leaving behind a thermally stratified fireball with sufficient thermal energy to produce the pulsating, decaying tail. Together, these features provide a self-consistent physical framework for understanding the observed energetics of magnetar giant flares. The eruption also expels a magnetically dominated giant plasmoid carrying up to ∼9% of the magnetosphere’s total magnetic energy. Furthermore, our simulation demonstrates how the plasmoid drives the formation of a blast wave—an important ingredient in models linking magnetar eruptions to fast radio bursts.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2023

A Catalog of Distance Determinations for the LAMOST DR8 K Giants in the Galactic Halo

We present a catalog of distances for 19,544 K giants drawn from Large Sky Area Multi-Object Fiber Spectroscopic Telescope (LAMOST) DR8. Most of them are located in the halo of the Milky Way up to ~120 kpc. There are 15% K giants without Sloan Digital Sky Survey (SDSS) photometry, for which we supplements with Pan-STARRS1 (PS1) photometry calibrated to SDSS photometric system. The possible contamination of the red clumps/horizontal branch are removed according to metallicities and colors before the distance determination. Combining the LAMOST spectroscopic metallicities with the SDSS/PS1 photometry, we estimate the absolute magnitudes in the SDSS r band, the distance moduli, and the corresponding uncertainties through an Bayesian approach devised by Xue et al. for the Sloan Extension for Galactic understanding and exploration halo K giants. The typical distance precision is about 11%. The stars in the catalog lie in a region of 4–126 kpc from the Galactic center, of which with 6320 stars beyond 20 kpc and 273 stars beyond 50 kpc, forming the largest spectroscopic sample of distant tracers in the Milky Way halo so far.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2023

Giant Nonlinear Optical Response via Coherent Stacking of In-Plane Ferroelectric Layers

Thin ferroelectric materials hold great promise for compact nonvolatile memory and nonlinear optical and optoelectronic devices. Herein, an ultrathin in-plane ferroelectric material that exhibits a giant nonlinear optical effect, group-IV monochalcogenide SnSe, is reported. Nanometer-scale ferroelectric domains with ≈90°/270° twin boundaries or ≈180° domain walls are revealed in physical-vapor-deposited SnSe by lateral piezoresponse force microscopy. Atomic structure characterization reveals both parallel and antiparallel stacking of neighboring van der Waals ferroelectric layers, leading to ferroelectric or antiferroelectric ordering. Ferroelectric domains exhibit giant nonlinear optical activity due to coherent enhancement of second-harmonic fields and the as-resulted second-harmonic generation was observed to be 100 times more intense than monolayer WS 2 . This work demonstrates in-plane ferroelectric ordering and giant nonlinear optical activity in SnSe, which paves the way for applications in on-chip nonlinear optical components and nonvolatile memory devices.

36 MATERIALS SCIENCE↗
DOE OSTI2022

Giant Orbital Anisotropy with Strong Spin–Orbit Coupling Established at the Pseudomorphic Interface of the Co/Pd Superlattice

Orbital anisotropy at interfaces in magnetic heterostructures has been key to pioneering spin–orbit-related phenomena. However, modulating the interface’s electronic structure to make it abnormally asymmetric has been challenging because of lack of appropriate methods. Here, the authors report that low-energy proton irradiation achieves a strong level of inversion asymmetry and unusual strain at interfaces in [Co/Pd] superlattices through nondestructive, selective removal of oxygen from Co3O4/Pd superlattices during irradiation. Structural investigations corroborate that progressive reduction of Co3O4into Co establishes pseudomorphic growth with sharp interfaces and atypically large tensile stress. The normal component of orbital to spin magnetic moment at the interface is the largest among those observed in layered Co systems, which is associated with giant orbital anisotropy theoretically confirmed, and resulting very large interfacial magnetic anisotropy is observed. All results attribute not only to giant orbital anisotropy but to enhanced interfacial spin–orbit coupling owing to the pseudomorphic nature at the interface. They are strongly supported by the observation of reversal of polarity of temperature-dependent Anomalous Hall signal, a signature of Berry phase. This work suggests that establishing both giant orbital anisotropy and strong spin–orbit coupling at the interface is key to exploring spintronic devices with new functionalities.

42 ENGINEERING↗
DOE OSTI2023

Precise synthesis and photovoltaic properties of giant molecule acceptors

Series of giant molecule acceptors DY, TY and QY with two, three and four small molecule acceptor subunits are synthesized by a stepwise synthetic method and used for systematically investigating the influence of subunit numbers on the structure-property relationship from small molecule acceptor YDT to giant molecule acceptors and to polymerized small molecule acceptor PY-IT. Among these acceptors-based devices, the TY-based film shows proper donor/acceptor phase separation, higher charge transfer state yield and longer charge transfer state lifetime. Combining with the highest electron mobility, more efficient exciton dissociation and lower charge carrier recombination properties, the TY-based device exhibits the highest power conversion efficiency of 16.32%. These results indicate that the subunit number in these acceptors has significant influence on their photovoltaic properties. This stepwise synthetic method of giant molecule acceptors will be beneficial to diversify their structures and promote their applications in high-efficiency and stable organic solar cells.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
DOE OSTI2022

Galactic ArchaeoLogIcaL ExcavatiOns (GALILEO): I. An updated census of APOGEE N-rich giants across the Milky Way

We use the 17th data release of the second phase of the Apache Point Observatory Galactic Evolution Experiment (APOGEE-2) to provide a homogenous census of N-rich red giant stars across the Milky Way (MW). We report a total of 149 newly identified N-rich field giants toward the bulge, metal-poor disk, and halo of our Galaxy. They exhibit significant enrichment in their nitrogen abundance ratios ([N/Fe] ≳ +0.5), along with simultaneous depletions in their [C/Fe] abundance ratios ([C/Fe] < +0.15), and they cover a wide range of metallicities (-1.8 < [Fe/H] < -0.7). The final sample of candidate N-rich red giant stars with globular-cluster-like (GC-like) abundance patterns from the APOGEE survey includes a grand total of ~412 unique objects. These strongly N-enhanced stars are speculated to have been stripped from GCs based on their chemical similarities with these systems. Even though we have not found any strong evidence for binary companions or signatures of pulsating variability yet, we cannot rule out the possibility that some of these objects were members of binary systems in the past and/or are currently part of a variable system. In particular, the fact that we identify such stars among the field stars in our Galaxy provides strong evidence that the nucleosynthetic process(es) producing the anomalous [N/Fe] abundance ratios occurs over a wide range of metallicities. This may provide evidence either for or against the uniqueness of the progenitor stars to GCs and/or the existence of chemical anomalies associated with likely tidally shredded clusters in massive dwarf galaxies such as “Kraken/Koala”, Gaia-Enceladus-Sausage, among others, before or during their accretion by the MW. In conclusion, a dynamical analysis reveals that the newly identified N-rich stars exhibit a wide range of dynamical characteristics throughout the MW, indicating that they were produced in a variety of Galactic environments.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2020

The shock physics of giant impacts: Key requirements for the equations of state

We discuss major challenges in modeling giant impacts between planetary bodies, focusing on the equations of state (EOS). During the giant impact stage of planet formation, rocky planets are melted and partially vaporized. However, most EOS models fail to reproduce experimental constraints on the thermodynamic properties of the major minerals over the required phase space. Here, we present an updated version of the widely-used ANEOS model that includes a user-defined heat capacity limit in the thermal free energy term. Our revised model for forsterite (Mg 2 SiO 4 ), a common proxy for the mantles of rocky planets, provides a better fit to material data over most of the phase space of giant impacts. We discuss the limitations of this model and the Tillotson equation of state, a commonly used alternative model.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2023

An investigation of non-canonical mixing in red giant stars using APOGEE 12 C/ 13 C ratios observed in open cluster stars

Standard stellar evolution theory poorly predicts the surface abundances of chemical species in low-mass, red giant branch (RGB) stars. Observations show an enhancement of p–p chain and CNO cycle products in red giant envelopes, which suggests the existence of non-canonical mixing that brings interior burning products to the surface of these stars. The 12 C/ 13 C ratio is a highly sensitive abundance metric used to probe this mixing. We investigate extra RGB mixing by examining: (1) how 12 C/ 13 C is altered along the RGB, and (2) how 12 C/ 13 C changes for stars of varying age and mass. Our sample consists of 43 red giants, spread over 15 open clusters from the Sloan Digital Sky Survey’s APOGEE DR17, that have reliable 12 C/ 13 C ratios derived from their APOGEE spectra. We vetted these 12 C/ 13 C ratios and compared them as a function of evolution and age/mass to the standard mixing model of stellar evolution, and to a model that includes prescriptions for RGB thermohaline mixing and stellar rotation. We find that the observations deviate from standard mixing models, implying the need for extra mixing. Additionally, some of the abundance patterns depart from the thermohaline model, and it is unclear whether these differences are due to incomplete observations, issues inherent to the model, our assumption of the cause of extra mixing, or any combination of these factors. Nevertheless, the surface abundances across our age/mass range clearly deviate from the standard model, agreeing with the notion of a universal mechanism for RGB extra mixing in low-mass stars.

79 ASTRONOMY AND ASTROPHYSICS↗