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Autonomous Vegetation Cover Scene Classification of EO-1 Hyperion Hyperspectral Data

The Autonomous Sciencecraft Experiment (ASE) is a JPL-led, New Millennium Program mission containing new technology in the form of software to be flown on the Earth Observer-1 (EO-1) satellite in early 2004. This new technology will facilitate an artificially intelligent machine with autonomous science-driven capabilities. Among the ASE flight software is a set of onboard science algorithms designed for autonomous data processing, primarily based on change detection from observation to observation. Using the output from these algorithms, ASE has the ability to autonomously modify the EO-1 observation plan, retargeting itself for a more in-depth observation of a scientific event in progress. Furthermore, intelligent and selective information down-linking will maximize return of the most valuable scientific data. Among the algorithms developed for use on ASE is a Lava-Vegetation (L-V) detection algorithm. This algorithm can effectively identify the initial location and extent of lava and vegetation coverage based on spectral shape. Comparison of several different observations, all classified via this algorithm, can make change detection possible.

Lee, R. J.↗

Retrieval of Marine Water Constituents Using Atmospherically Corrected AVIRIS Hyperspectral Data

This paper reports on the validation of bio-optical models in estuarine and nearshore (case 2) waters of New Jersey-New York to retrieve accurate water-leaving radiance spectra and chlorophyll concentration from the Airborne Visible/Infrared Imaging Spectrometer (AVIRIS) imaging spectrometer data. MODTRAN-4 was applied to remove the effects of the atmosphere so as to infer the water-leaving radiance. The study area - Hudson/Raritan of New York and New Jersey (Figure 1) is an extremely complex estuarine system where tidal and wind-driven currents are modified by freshwater discharges from the Hudson, Raritan, Hackensack, and Passaic rivers. Over the last century, the estuarine water quality has degraded in part due to eutrophication, which has disrupted the preexisting natural balance, resulting in phytoplankton blooms of both increased frequency and intensity, increasing oxygen demand, and leading to episodes of hypoxia. As the end result, a thematic map of chlorophyll-a concentration was generated using an atmospherically corrected AVIRIS ratio image. This thematic map serves as an indication of phytoplankton concentration. Such maps are important input into the geographic information system (GIS) for use as a management tool for monitoring water resources.

Bagheri, Sima↗

Seasonal Correlations of SST, Water Vapor, and Convective Activity in Tropical Oceans: A New Hyperspectral Data Set for Climate Model Testing

The analysis of the response of the Earth Climate System to the seasonal changes of solar forcing in the tropical oceans using four years of the Atmospheric Infrared Sounder (AIRS) and Advanced Microwave Sounding Unit (AMSU) data between 2002 and 2006 gives new insight into amplitude and phase relationships between surface and tropospheric temperatures, humidity, and convective activity. The intensity of the convective activity is measured by counting deep convective clouds. The peaks of convective activity, temperature in the mid-troposphere, and water vapor in the 0-30 N and 0-30 S tropical ocean zonal means occur about two months after solstice, all leading the peak of the sea surface temperature by several weeks. Phase is key to the evaluation of feedback. The evaluation of climate models in terms of zonal and annual means and annual mean deviations from zonal means can now be supplemented by evaluating the phase of key atmospheric and surface parameters relative to solstice. The ability of climate models to reproduce the statistical flavor of the observed amplitudes and relative phases for broad zonal means should lead to increased confidence in the realism of their water vapor and cloud feedback algorithms. AIRS and AMSU were launched into a 705 km altitude polar sun-synchronous orbit on the EOS Aqua spacecraft on May 4, 2002, and have been in routine data gathering mode since September 2002.

Atmospheric Infrared Sounder (AIRS)↗

Onboard Processing of Multispectral and Hyperspectral Data of Volcanic Activity for Future Earth-Orbiting and Planetary Missions

Autonomous onboard processing of data allows rapid response to detections of dynamic, changing processes. Software that can detect volcanic eruptions from thermal emission has been used to retask the Earth Observing 1 spacecraft to obtain additional data of the eruption. Rapid transmission of these data to the ground, and the automatic processing of the data to generated images, estimates of eruption parameters and maps of thermal structure, has allowed these products to be delivered rapidly to volcanologists to aid them in assessing eruption risk and hazard. Such applications will enhance science return from future Earth-orbiting spacecraft and also from spacecraft exploring the Solar System, or beyond, which hope to image dynamic processes. Especially in the latter case, long communication times between the spacecraft and Earth exclude a rapid response to what may be a transient process - only using onboard autonomy can the spacecraft react quickly to such an event.

Jupiter↗

Impact of Assimilating Cloud-Cleared and Adaptively Thinned Infrared Hyperspectral Data on Tropical Cyclones in a Global Data Assimilation and Forecast Framework

A simple adaptive thinning methodology for Atmospheric Infrared Sounder (AIRS), Cross-track Infrared Sounder (CrIS) and Infrared Atmospheric Sounding Interferometer (IASI) radiances is evaluated through a combination of Observing System Experiments (OSEs) and adjoint methodologies. In addition, the impact of cloud-cleared radiances for AIRS is also evaluated. The OSEs are performed with the NASA Goddard Earth Observing System (GEOS, version 5) data assimilation and forecast model. The adaptive strategy uses a denser coverage in a moving domain centered around tropical cyclones (TCs), sparser everywhere else.The OSEs consist of three sets of data assimilation runs that cover the period from September 1st to 10 November 2014, with the first 20 days discarded for spin-up. All sets assimilate conventional and satellite observations used operationally. In addition, one ingests clear-sky AIRS, CrIS, and IASI radiances at different densities, another AIRS cloud-cleared radiances, and CrIS and IASI clear-sky radiances, and the third adaptively thinned AIRS, CrIS and IASI radiances. Daily 10-day forecasts are initialized from all these analyses and evaluated with focus on TCs over the Atlantic and the Pacific.Evidence is provided that this simple TC-centered adaptive radiance thinning strategy, in full agreement with previous theoretical studies, increases the global forecast skill and improves tropical cyclone representation and intensity forecast. In addition, the impact of AIRS cloud-cleared radiances is demonstrated to be particularly strong on TCs. The implications are that cloud-cleared radiances, if thinned more aggressively than the currently used clear-sky radiances, could be operationally used with large gain in TC forecasting and no loss of global skill.

Reale, Oreste↗

Mineral Mapping with AVIRIS and EO-1 Hyperion

Imaging Spectrometry data or Hyperspectral Imagery (HSI) acquired using airborne systems have been used in the geologic community since the early 1980 s and represent a mature technology (Goetz et al., 1985; Kruse et al., 1999). The solar spectral range, 0.4 to 2.5 m, provides abundant information about many important Earth-surface minerals (Clark et al., 1990). In particular, the 2.0 to 2.5 m (SWIR) spectral range covers spectral features of hydroxyl-bearing minerals, sulfates, and carbonates common to many geologic units and hydrothermal alteration assemblages. Previous research has proven the ability of airborne and spaceborne hyperspectral systems to uniquely identify and map these and other minerals, even in sub-pixel abundances (Kruse and Lefkoff, 1993; Boardman and Kruse, 1994; Boardman et al., 1995; Kruse, et al., 1999). This paper describes a case history for a site in northern Death Valley, California and Nevada along with selected SNR calculations/results for other sites around the world. Various hyperspectral mineral mapping results for this site have previously been presented and published (Kruse, 1988; Kruse et al., 1993, 1999, 2001, 2002, 2003), however, this paper presents a condensed summary of key details for hyperspectral data from 2000 and 2001 and the results of accuracy assessment for satellite hyperspectral data compared to airborne hyperspectral data used as ground truth.

Kruse, Fred A.↗

Hyperspectral Imagery Data for Remote Sensing

In order for remotely sensed data to be useful in a practical application for agriculture, an information product must be made available to the land management decision maker within 24 to 48 hours of data acquisition. Hyperspectral imagery data is proving useful in differentiation of plant species potentially allowing identification of non-healthy areas and pest infestations within crop fields that may require the farm managers attention. Currently however, extracting the needed site-specific feature information from the vast spectral content of large hyperspectral image files is a labor intensive and time consuming task prohibiting the necessary fast turnaround from raw data to final product. We illustrate the methods, techniques and technologies necessary to produce field-level information products from imagery and other related spatial data that are useful to the farm manager for specific decisions that must be made throughout the growing season. We also propose to demonstrate the cost effectiveness of an integrated system, from acquisition to final product distribution, to utilize imagery for decisions on a working farm in conjunction with a commercial agricultural services company and their crop scouts. The demonstration farm is Chesapeake Farms, a 3000 acre research farm in Chestertown, Maryland on the Eastern Shore and is owned by the DuPont Corporation.

Garegnani, Jerry↗

Updates in Developing a Prototype Science Pipeline and Full-Volume, Global Hyperspectral Synthetic Data Sets for NASA’s Earth System Observatory’s Upcoming Surface, Biology and Geology Mission

The Surface Biology and Geology (SBG) mission recently passed mission confirmation review and has entered phase A – design and development. SBG will acquire high resolution solar-reflected spectroscopy and thermal infrared observations at a data rate of ~2.5 TB/day and generate products at ~40 TB/day. Given that the per-day volume is greater than NASA’s total extant airborne hyperspectral data collection, collecting, processing, disseminating, and exploiting the SBG data present new challenges. To meet these challenges, we have developed a prototype science pipeline and a full-volume global hyperspectral synthetic data set to help prepare for SBG’s flight (see poster GC42D-0730). Our science pipeline is based on the science processing technology developed for NASA’s Kepler and TESS planet-hunting missions. The pipeline infrastructure, Ziggy, provides a scalable architecture for robust, repeatable, and replicable science and application products that can be run on a range of systems from a laptop to the cloud or a supercomputer. Ziggy is compliant with NASA Procedural Requirement (NPR) 7150.2C, is at a technical readiness level (TRL) of 7 and has been released to github.com/nasa/ziggy. We integrated Ziggy with EO-1/Hyperion workflows to build a prototype pipeline and ingested the 17-year mission archive that provides globally sampled visible through shortwave infrared spectra that are representative of SBG data types and volumes. We fully implemented the first stage and processed the entire 55 TB Hyperion data set from the raw data (Level 0) to top-of-the-atmosphere radiance (Level 1R). We are currently evaluating the ISOFIT atmospheric correction module to convert the L1R data to surface reflectance (Level 2) before reprocessing the full data set to L2. Crosschecks are being performed with RadCalNet as well as with coincident observations by AVIRIS. We are also investigating modern methods for georectifying the Hyperion scenes. Finally, we describe an analysis of the cost to conduct forward processing and reprocessing campaigns for SBG on HECC with dedicated compute and storage resources using the resurrected Hyperion pipeline as a proxy for full-volume SBG data. The analysis demonstrates that SBG L0 data can be processed to L2 on HECC with full reprocessing campaigns every two years for ~$2.6M over a 7-year lifespan. Moreover, 69% of the system capacity would be available for other activities, possibly enabling future open-source science activities, including algorithm development, L3+ processing, .etc.

ESD↗

Advances in Hyperspectral Image Classification Methods for Vegetation and Agricultural Cropland Studies

Hyperspectral data are becoming more widely available via sensors on airborne and unmanned aerial vehicle (UAV) platforms, as well as proximal platforms. While space-based hyperspectral data continue to be limited in availability, multiple spaceborne Earth-observing missions on traditional platforms are scheduled for launch, and companies are experimenting with small satellites for constellations to observe the Earth, as well as for planetary missions. Land cover mapping via classification is one of the most important applications of hyperspectral remote sensing and will increase in significance as time series of imagery are more readily available. However, while the narrow bands of hyperspectral data provide new opportunities for chemistry-based modeling and mapping, challenges remain. Hyperspectral data are high dimensional, and many bands are highly correlated or irrelevant for a given classification problem. For supervised classification methods, the quantity of training data is typically limited relative to the dimension of the input space. The resulting Hughes phenomenon, often referred to as the curse of dimensionality, increases potential for unstable parameter estimates, overfitting, and poor generalization of classifiers. This is particularly problematic for parametric approaches such as Gaussian maximum likelihood–based classifiers that have been the backbone of pixel-based multispectral classification methods. This issue has motivated investigation of alternatives, including regularization of the class covariance matrices, ensembles of weak classifiers, development of feature selection and extraction methods, adoption of nonparametric classifiers, and exploration of methods to exploit unlabeled samples via semi-supervised and active learning. Data sets are also quite large, motivating computationally efficient algorithms and implementations. This chapter provides an overview of the recent advances in classification methods for mapping vegetation using hyperspectral data. Three data sets that are used in the hyperspectral classification literature (e.g., Botswana Hyperion satellite data and AVIRIS airborne data over both Kennedy Space Center and Indian Pines) are described in Section 3.2 and used to illustrate methods described in the chapter. An additional high-resolution hyperspectral data set acquired by a SpecTIR sensor on an airborne platform over the Indian Pines area is included to exemplify the use of new deep learning approaches, and a multiplatform example of airborne hyperspectral data is provided to demonstrate transfer learning in hyperspectral image classification. Classical approaches for supervised and unsupervised feature selection and extraction are reviewed in Section 3.3. In particular, nonlinearities exhibited in hyperspectral imagery have motivated development of nonlinear feature extraction methods in manifold learning, which are outlined in Section 3.3.1.4. Spatial context is also important in classification of both natural vegetation with complex textural patterns and large agricultural fields with significant local variability within fields. Approaches to exploit spatial features at both the pixel level (e.g., co-occurrence–based texture and extended morphological attribute profiles [EMAPs]) and integration of segmentation approaches (e.g., HSeg) are discussed in this context in Section 3.3.2. Recently, classification methods that leverage nonparametric methods originating in the machine learning community have grown in popularity. An overview of both widely used and newly emerging approaches, including support vector machines (SVMs), Gaussian mixture models, and deep learning based on convolutional neural networks is provided in Section 3.4. Strategies to exploit unlabeled samples, including active learning and metric learning, which combine feature extraction and augmentation of the pool of training samples in an active learning framework, are outlined in Section 3.5. Integration of image segmentation with classification to accommodate spatial coherence typically observed in vegetation is also explored, including as an integrated active learning system. Exploitation of multisensor strategies for augmenting the pool of training samples is investigated via a transfer learning framework in Section 3.5.1.2. Finally, we look to the future, considering opportunities soon to be provided by new paradigms, as hyperspectral sensing is becoming common at multiple scales from ground-based and airborne autonomous vehicles to manned aircraft and space-based platforms.

Pasolli, Edoardo↗

Satellite-Derived Imagery and Transfer Learning: A Novel Technique for Land Cover Classification

Land cover classification is a continuing research topic due to its relevance to land use and land cover changes from impacts such as climate change, agriculture, urbanization, and hazardous weather. Simple access to frequently changing land cover classifications could provide knowledge and decision support to various researchers and agencies across the globe for each of above-mentioned and related influences. This research aims to provide a novel technique for land cover classification of remote sensing imagery; harnessing Artificial Neural Networks and transfer learning (TL). Knowledge sharing techniques within machine learning are typically utilized when training datasets are sparse or transitions between data modalities is required. In this case, two data modalities, multi and hyperspectral data, are considered for knowledge transfer. The large number of continuous spectral bands available from hyperspectral sensors typically provide increased sophisticated land classification capability compared to more traditional multispectral imagery with limited discrete spectral bands. However, large-scale, frequent access to hyperspectral imagery is relatively limited. The proposed classification technique would therefore prove useful in regions in which hyperspectral data are not readily available for classification but multispectral data are. Image segmentation models are trained on each multi and hyperspectral datasets. Knowledge sharing techniques are then applied to each model to understand what knowledge, if any, is gained when moving between the data modalities. The datasets utilized for training and testing a U-Net model include the European Space Agency’s multispectral imager Sentinel-2 and the hyperspectral German Aerospace Center’s Earth Sensing Imaging Spectrometer (DESIS). Initially, only two classes, land and water, are classified for simplicity. However, more complex classes can be added if knowledge sharing is successful. The workflow for image classification through supervised image segmentation with a U-Net model will be discussed along with metrics calculated before and after TL for both Sentinel-2 and DESIS data are applied. Additionally, future steps to advance the sophistication of this technique as well as other applicable methodologies will be explored.

Emily Foshee↗

Mapping invasive alien species in grassland ecosystems using airborne imaging spectroscopy and remotely observable vegetation functional traits

Lespedeza cuneata (sericea lespedeza; hereafter “sericea”) is an invasive species brought to the U.S. from East Asia in the 1890s to be used as forage. However, it has now become a growing ecological and economic threat in grasslands of several states in the U.S. southern Great Plains including Oklahoma, Kansas, Missouri, and Nebraska. Here, we demonstrate the capability of airborne imaging spectroscopy to map sericea in a large natural grassland within the Tallgrass Prairie Preserve, the largest protected tallgrass prairie in the world, located in northeastern Oklahoma. Through this research, we investigated which remotely observable vegetation functional traits (referring to biochemical, physiological, and structural traits) contribute to distinguishing sericea from cooccurring native species and whether we can detect sericea remotely through quantifying these functional traits using imaging spectroscopic data (also known as hyperspectral data). To achieve these objectives, full-range airborne hyperspectral data with spatial resolution of 1 m were collected from the study area in August 2020. In addition, a total of 12 vegetation functional traits were measured through field sampling for model development. We first identified functional traits that contributed to separating sericea from other species, and then used them in a classification model to detect sericea in our study site. We found total carotenoids (sum of neoxanthin, violaxanthin, antheraxanthin, zeaxanthin, and lutein), chlorophyll a + b (sum of chlorophyll a and chlorophyll b), total nitrogen, canopy height, potassium, and magnesium as the main functional traits contributing to the detection of sericea; an overall classification accuracy of approximately 94% was reported. However, the proposed approach overestimated sericea cover in species-rich plant communities. Overall, our findings demonstrated an essential role for airborne remote sensing in 1) direct mapping of invasive plants and 2) quantifying functional traits associated with success strategies of invasive species. Eventually, experiments like ours can aid in developing large-scale and science-driven management practices to both identify the current extent, and to control the spread of invasive species in grasslands and similar short-stature environments. This will not only improve management practices but will have major societal and economic benefits.

Hamed Gholizadeh↗

Reconfigurable Hardware for Compressing Hyperspectral Image Data

High-speed, low-power, reconfigurable electronic hardware has been developed to implement ICER-3D, an algorithm for compressing hyperspectral-image data. The algorithm and parts thereof have been the topics of several NASA Tech Briefs articles, including Context Modeler for Wavelet Compression of Hyperspectral Images (NPO-43239) and ICER-3D Hyperspectral Image Compression Software (NPO-43238), which appear elsewhere in this issue of NASA Tech Briefs. As described in more detail in those articles, the algorithm includes three main subalgorithms: one for computing wavelet transforms, one for context modeling, and one for entropy encoding. For the purpose of designing the hardware, these subalgorithms are treated as modules to be implemented efficiently in field-programmable gate arrays (FPGAs). The design takes advantage of industry- standard, commercially available FPGAs. The implementation targets the Xilinx Virtex II pro architecture, which has embedded PowerPC processor cores with flexible on-chip bus architecture. It incorporates an efficient parallel and pipelined architecture to compress the three-dimensional image data. The design provides for internal buffering to minimize intensive input/output operations while making efficient use of offchip memory. The design is scalable in that the subalgorithms are implemented as independent hardware modules that can be combined in parallel to increase throughput. The on-chip processor manages the overall operation of the compression system, including execution of the top-level control functions as well as scheduling, initiating, and monitoring processes. The design prototype has been demonstrated to be capable of compressing hyperspectral data at a rate of 4.5 megasamples per second at a conservative clock frequency of 50 MHz, with a potential for substantially greater throughput at a higher clock frequency. The power consumption of the prototype is less than 6.5 W. The reconfigurability (by means of reprogramming) of the FPGAs makes it possible to effectively alter the design to some extent to satisfy different requirements without adding hardware. The implementation could be easily propagated to future FPGA generations and/or to custom application-specific integrated circuits.

Aranki, Nazeeh↗

Development of the Ames Global Hyperspectral Synthetic Data Set: Surface Bidirectional Reflectance Distribution Function

This study introduces the Ames Global Hyperspectral Synthetic Data set (AGHSD), in particular the surface bidirectional reflectance distribution function (BRDF) product, to support the NASA Surface Biology and Geology (SBG) mission development. The data set is generated based on the corresponding multispectral BRDF products from NASA's MODIS satellite sensor. Based on theories of radiative transfer in vegetation canopies, we derive a simple but robust relationship that indicates that the hyperspectral surface BRDF can be accurately approximated as a weighted sum of the soil surface reflectance, the leaf single albedo, and the canopy scattering coefficient, where the weights or coefficients are spectrally invariant and thus readily estimated from the multispectral MODIS products. We validate the algorithm with simulations by a Monte Carlo Ray Tracing model and find the results highly consistent with the theoretic derivation. Using reflectance spectra of soil and vegetation derived from existing spectral libraries, we apply the algorithm to generate the AGHSD BRDF product at 1 km and 8-day resolutions for the year of 2019. The data set is biogeochemically and biogeophysically coherent and consistent, and serves the goal to support the SBG community in developing sciences and applications for the future global imaging spectroscopy mission.

Hyperspectral Remote Sensing↗

Spatial/Spectral Identification of Endmembers from AVIRIS Data using Mathematical Morphology

During the last several years, a number of airborne and satellite hyperspectral sensors have been developed or improved for remote sensing applications. Imaging spectrometry allows the detection of materials, objects and regions in a particular scene with a high degree of accuracy. Hyperspectral data typically consist of hundreds of thousands of spectra, so the analysis of this information is a key issue. Mathematical morphology theory is a widely used nonlinear technique for image analysis and pattern recognition. Although it is especially well suited to segment binary or grayscale images with irregular and complex shapes, its application in the classification/segmentation of multispectral or hyperspectral images has been quite rare. In this paper, we discuss a new completely automated methodology to find endmembers in the hyperspectral data cube using mathematical morphology. The extension of classic morphology to the hyperspectral domain allows us to integrate spectral and spatial information in the analysis process. In Section 3, some basic concepts about mathematical morphology and the technical details of our algorithm are provided. In Section 4, the accuracy of the proposed method is tested by its application to real hyperspectral data obtained from the Airborne Visible/Infrared Imaging Spectrometer (AVIRIS) imaging spectrometer. Some details about these data and reference results, obtained by well-known endmember extraction techniques, are provided in Section 2. Finally, in Section 5 we expose the main conclusions at which we have arrived.

Plaza, Antonio↗