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At least 55 records · Page 3

Estimation of conditional cumulative incidence functions under generalized semiparametric regression models with missing covariates, with application to analysis of biomarker correlates in vaccine trials

Herein, this article presents generalized semiparametric regression models for conditional cumulative incidence functions with competing risks data when covariates are missing by sampling design or happenstance. A doubly robust augmented inverse probability weighted (AIPW) complete-case approach to estimation and inference is investigated. This approach modifies IPW complete-case estimating equations by exploiting the key features in the relationship between the missing covariates and the phase-one data to improve efficiency. An iterative numerical procedure is derived to solve the nonlinear estimating equations. The asymptotic properties of the proposed estimators are established. A simulation study examining the finite-sample performances of the proposed estimators shows that the AIPW estimators are more efficient than the IPW estimators. The developed method is applied to the RV144 HIV-1 vaccine efficacy trial to investigate vaccine-induced IgG binding antibodies to HIV-1 as correlates of acquisition of HIV-1 infection while taking account of whether the HIV-1 sequences are near or far from the HIV-1 sequences represented in the vaccine construct.

97 MATHEMATICS AND COMPUTING↗

Volatile compounds in shergottite and nakhlite meteorites

Since discovery of apparent carbonate carbon in Nakhla, significant evidence has accumulated for occurrence of volatile compounds in shergotties and nakhlites. Results are presented from a study of volatile compounds in three shergottites, one nakhlite, and three eucrite control samples. Shergotties ALHA77005, EETA79001, and Shergotty, and the nakhlite Nakhla, all contain oxidized sulfur (sulfate) of preterrestrial origin; sulfur oxidation is most complete in EETA79001/Lith-C. Significant bulk carbonate was confirmed in Nakhla and trace carbonate was substantiated for EETA79001, all of which appears to be preterrestrial in origin. Chlorine covaries with oxidized sulfur, whereas carbonate and sulfate are inversely related. These volatile compounds were probably formed in a highly oxidizing, aqueous environment sometime in the late stage histories of the rocks that are now represented as meteorites. They are consistent with the hypothesis that shergottite and nakhlite meteorites originated on Mars and that Mars has supported aqueous geochemistry during its history.

Gooding, James L.↗

A Bayesian approach to nonlinear inversion

Powerful methods are now available for solving linear parametric inverse problems. However, many inverse problems which arise in geohysics are nonlinear. Fortunately, it is possible to treat most of these with the air of linear perturbation theory and liner inversion. But a convenient method is needed for assessing the importance of nonlinearity in these quasi-linear problems. The present paper provides such a method. Matsu'ura and Jackson (1984) have presented a simple algorithm for evaluating the asymptotic covariance matrix fo estimation errors. In the present investigation, aspects of linear inversion are discussed, taking into account linear parametric inverse problems, nonuniqueness, prior information, confidence limits, conditional and marginal statistics, the relative importance of the prior and observational data, and standardized variables. Attention is also given to nonlinear inversion, and the application of the considered approaches to a number of examples.

Jackson, D. D.↗

Volatile compounds in shergottite and nakhlite meteorites

Shergottites ALHA77005, EETA79001, and Shergotty, and the nakhlite Nakhla are all found to contain oxidized sulfur (sulfate) of preterrestrial origin, In EETA79001, which is composed of three different lithologies, the degree of sulfur oxidation increased from A to C. Significant bulk carbonate was confirmed in Nakhla and trace carbonate was confirmed for EETA79001, all of which seems to be preterrestrial in origin. Chlorine in shergottites and Nakhla is found to covary with oxidized sulfur, whereas carbonate and sulfate are related inversely. Sulfate and carbonate in shergottites and Nakhla were probably formed by aqueous geochemistry in a highly oxidizing environment sometime near the late-stage histories of the rocks that are now represented as meteorites.

Gooding, James L.↗

Improving Coastal Ocean Color Validation Capabilities through Application of Inherent Optical Properties (IOPs)

Understanding how the different components of seawater alter the path of incident sunlight through scattering and absorption is essential to using remotely sensed ocean color observations effectively. This is particularly apropos in coastal waters where the different optically significant components (phytoplankton, detrital material, inorganic minerals, etc.) vary widely in concentration, often independently from one another. Inherent Optical Properties (IOPs) form the link between these biogeochemical constituents and the Apparent Optical Properties (AOPs). understanding this interrelationship is at the heart of successfully carrying out inversions of satellite-measured radiance to biogeochemical properties. While sufficient covariation of seawater constituents in case I waters typically allows empirical algorithms connecting AOPs and biogeochemical parameters to behave well, these empirical algorithms normally do not hold for case I1 regimes (Carder et al. 2003). Validation in the context of ocean color remote sensing refers to in-situ measurements used to verify or characterize algorithm products or any assumption used as input to an algorithm. In this project, validation capabilities are considered those measurement capabilities, techniques, methods, models, etc. that allow effective validation. Enhancing current validation capabilities by incorporating state-of-the-art IOP measurements and optical models is the purpose of this work. Involved in this pursuit is improving core IOP measurement capabilities (spectral, angular, spatio-temporal resolutions), improving our understanding of the behavior of analytical AOP-IOP approximations in complex coastal waters, and improving the spatial and temporal resolution of biogeochemical data for validation by applying biogeochemical-IOP inversion models so that these parameters can be computed from real-time IOP sensors with high sampling rates. Research cruises supported by this project provides for collection and processing of seawater samples for biogeochemical (pigments, DOC and POC) and optical (CDOM and POM absorption coefficients) analyses to enhance our understanding of the linkages between in-water optical measurements (IOPs and AOPs) and biogeochemical constituents and to provide a more comprehensive suite of validation products.

Mannino, Antonio↗

Using CO2:CO Correlations to Improve Inverse Analyses of Carbon Fluxes

Observed correlations between atmospheric concentrations of CO2 and CO represent potentially powerful information for improving CO2 surface flux estimates through coupled CO2-CO inverse analyses. We explore the value of these correlations in improving estimates of regional CO2 fluxes in east Asia by using aircraft observations of CO2 and CO from the TRACE-P campaign over the NW Pacific in March 2001. Our inverse model uses regional CO2 and CO surface fluxes as the state vector, separating biospheric and combustion contributions to CO2. CO2-CO error correlation coefficients are included in the inversion as off-diagonal entries in the a priori and observation error covariance matrices. We derive error correlations in a priori combustion source estimates of CO2 and CO by propagating error estimates of fuel consumption rates and emission factors. However, we find that these correlations are weak because CO source uncertainties are mostly determined by emission factors. Observed correlations between atmospheric CO2 and CO concentrations imply corresponding error correlations in the chemical transport model used as the forward model for the inversion. These error correlations in excess of 0.7, as derived from the TRACE-P data, enable a coupled CO2-CO inversion to achieve significant improvement over a CO2-only inversion for quantifying regional fluxes of CO2.

Palmer, Paul I.↗

Approximating and incorporating model uncertainty in an inversion for seismic source functions: Preliminary results

We present preliminary work on propagating model uncertainty into the estimation of the time domain source time functions of the seismic source. Our method is based on an estimated model covariance function, which we estimate from the data. The model covariance function is then used to construct a suite of surrogate Greens functions which we use in a Monte Carlo type inversion scheme. The result is a probability density function of the six independent source time functions, each of which corresponds to an individual component of the seismic moment tensor. We compare the results of our method with those obtained using a computationally expensive finite difference Monte Carlo method and find that our new method produces results that are deficient in low frequencies. The advantage of our new method, which we term the Karhunen-Loeve Monte Carlo (KLMC) method, is that is several orders of magnitude faster than our current method, which uses a finite difference scheme to produce the suite of forward models.

42 ENGINEERING↗

Application of Markov Chain Monte Carlo Methods for Uncertainty Quantification in Inverse Transport Problems

Determination of the components of a radioactive source/shield system using the system’s radiation signature is of great importance in homeland security, material safeguards, and waste management. Although significant progress has been made toward solving this inverse transport problem in recent years, work remains to be done to quantify the uncertainty in reconstructed results. In this article we apply two Markov chain Monte Carlo (MCMC) approaches, the delayed rejection adaptive metropolis (DRAM) and differential evolution adaptive metropolis (DREAM) methods, to solve inverse problems and quantify uncertainty. The DRAM method uses delayed rejection combined with global adaptation of the proposal covariance matrix. Furthermore, the DREAM method hybridizes MCMC sampling with the differential evolution (DE) algorithm. In numerical test cases, the DRAM and DREAM methods are shown to be superior to a first-order inverse Hessian approach for problems with noisy data and multiple unknown quantities, with DREAM converging to the posterior distribution more quickly than DRAM. The DREAM and DRAM results indicate that a full posterior distribution is required to quantify uncertainty in many inverse transport problems.

98 NUCLEAR DISARMAMENT, SAFEGUARDS, AND PHYSICAL P↗

A Bayesian approach to microwave precipitation profile retrieval

A multichannel passive microwave precipitation retrieval algorithm is developed. Bayes theorem is used to combine statistical information from numerical cloud models with forward radiative transfer modeling. A multivariate lognormal prior probability distribution contains the covariance information about hydrometeor distribution that resolves the nonuniqueness inherent in the inversion process. Hydrometeor profiles are retrieved by maximizing the posterior probability density for each vector of observations. The hydrometeor profile retrieval method is tested with data from the Advanced Microwave Precipitation Radiometer (10, 19, 37, and 85 GHz) of convection over ocean and land in Florida. The CP-2 multiparameter radar data are used to verify the retrieved profiles. The results show that the method can retrieve approximate hydrometeor profiles, with larger errors over land than water. There is considerably greater accuracy in the retrieval of integrated hydrometeor contents than of profiles. Many of the retrieval errors are traced to problems with the cloud model microphysical information, and future improvements to the algorithm are suggested.

Evans, K. Franklin↗

Random field estimation approach to multibody dynamics

The use of recursive techniques similar to random field models to factor and invert the inertia matrix of a multibody system is discussed. An equivalence is established between the composite multibody system inertia matrix and the covariance of the output of a described linear system model. Conditional mean estimation and sequential estimation problems are solved along with problems of filtering and smoothing. Formulas are developed to compute the covariance of several relevant quantities. The foregoing results are used to obtain the inverse of the composite multibody system inertia in closed form.

Rodriguez, G.↗

The inverse gravimetric problem in gravity modelling

One of the main purposes of geodesy is to determine the gravity field of the Earth in the space outside its physical surface. This purpose can be pursued without any particular knowledge of the internal density even if the exact shape of the physical surface of the Earth is not known, though this seems to entangle the two domains, as it was in the old Stoke's theory before the appearance of Molodensky's approach. Nevertheless, even when large, dense and homogeneous data sets are available, it was always recognized that subtracting from the gravity field the effect of the outer layer of the masses (topographic effect) yields a much smoother field. This is obviously more important when a sparse data set is bad so that any smoothing of the gravity field helps in interpolating between the data without raising the modeling error, this approach is generally followed because it has become very cheap in terms of computing time since the appearance of spectral techniques. The mathematical description of the Inverse Gravimetric Problem (IGP) is dominated mainly by two principles, which in loose terms can be formulated as follows: the knowledge of the external gravity field determines mainly the lateral variations of the density; and the deeper the density anomaly giving rise to a gravity anomaly, the more improperly posed is the problem of recovering the former from the latter. The statistical relation between rho and n (and its inverse) is also investigated in its general form, proving that degree cross-covariances have to be introduced to describe the behavior of rho. The problem of the simultaneous estimate of a spherical anomalous potential and of the external, topographic masses is addressed criticizing the choice of the mixed collection approach.

Sanso, F.↗

Applying Gaussian Process Machine Learning and Modern Probabilistic Programming to Satellite Data to Infer CO 2 Emissions

Satellite data provides essential insights into the spatiotemporal distribution of CO 2 concentrations. However, many atmospheric inverse models fail to adequately incorporate the spatial and temporal correlations inherent in satellite observations and often lack rigorous methods for estimating parameters like spatial length scales. We introduce an inference model that processes the spatiotemporal covariance in satellite data and estimates hyperparameters such as covariance length scales. Our approach uses the Gaussian process (GP) machine learning (ML) and modern probabilistic programming languages (PPLs) to perform atmospheric inversions of emissions from satellite data. We develop a GP ML inversion system based on modern PPLs and the GEOS-Chem chemical transport model, simulating atmospheric CO 2 concentrations corresponding to the Orbiting Carbon Observatory-2/3 (OCO-2/3) data for July 2020. In our supervised learning framework, we treat the GEOS-Chem simulated data set as the target, with predictors derived by scaling the target with sector-specific factors hidden from the GP machine. Our results show that the GP model, combined with GPU-enabled PPLs, effectively retrieves true emission scaling factors and infers noise levels concealed within the data. This suggests that our method could be applied over larger areas with more complex covariance structures, enabling comprehensive analysis of the spatiotemporal patterns observed in OCO-2/3 and similar satellite data sets.

54 ENVIRONMENTAL SCIENCES↗

Standard ozone profiles from balloon and satellite data sets

Standard profiles based on upper level averaged profiles from BUV and lower level averaged profiles from balloon measurements are presented in a parametric representation as a function of time of year and latitude. The representation is a simple 4-parameter function representing the ozone amount (m-atm-cm) in each of 12 atmospheric layers defined following the standard Umkehr convention. The same parameterization is applied to the Nimbus-7 SBUV data and is compared to the BUV/balloon parameterization. The ozone variance unaccounted for by the representation is presented and discussed. The season-latitude representation reduces considerably the ozone variance at all levels and explains much of the correlation between layers. This simple representation and corresponding covariance matrix have been used as a priori information in the ozone vertical profile inversion of the Nimbus-7 SBUV experimental measurements.

Klenk, K. F.↗

Efficient Method for Analyzing Hyperspectral Remote Sensing Data

The current and next generation satellite infrared sensors such as AIRS, IASI, CrIS, and CLARREO all have one thing in common: large number of spectral channels. In order to fully utilize the information content of these sensors, a large number of Radiative Transfer (RT) calculations through the inhomogeneous atmosphere are needed. It is also computationally intensive to invert atmospheric and surface properties using all the channels. Usually, only subsets of channels are used to perform physical inversions for atmospheric profiles. We will explore ways to speed up RT calculations and inversions and test the algorithms using data from the Infrared Atmospheric Sounding Interferometer (IASI) satellite instrument. We will describe a retrieval algorithm using a Principal Component-based Radiative Transfer Model (PCRTM) for generating atmospheric temperature/moisture/ozone profiles and surface properties. The retrieval algorithm performs both the radiative transfer calculations and inversions in the Principal Component (PC) domain. The inversion algorithm is based on a non-linear Levenberg- Marquardt method with climatology covariance matrices and a priori information as constraints. One advantage of this approach is that it uses all information content from the ultraspectral data so that the retrieval is less sensitive to instrument noise and eliminates the need for selecting a sub-set of the channels. We will also use data collected during the Joint Airborne IASI Validation Experiment (JAIVEx) field campaign to validate the algorithm and IASI retrievals.

Liu, Xu↗

A Singular Value Decomposition Framework for Retrievals with Vertical Distribution Information from Greenhouse Gas Column Absorption Spectroscopy Measurements

We review the singular value decomposition (SVD) framework and use it for quantifying and discerning vertical information in greenhouse gas retrievals from column integrated absorption measurements. While the commonly used traditional Bayesian optimal estimation (OE) assumes a prior distribution in order to regularize the inversion problem, the SVD approach identifies principal components that can be retrieved from the measurement without explicitly specifying a prior mean and prior covariance matrix. We review the SVD method, explicitly recognize the use of an uninformative prior and show it to incur no bias from the choice of the prior. We also make the connection between the SVD method and the pseudo-inverse, which makes it more intuitive and easy to understand. We illustrate the use of the SVD method on an integrated path differential absorption CO2 lidar measurement model and verify our derivations and bias-free properties versus optimal estimation using numerical simulations. In contrast, traditional OE retrievals exhibit bias when the prior mean used in the retrieval differs from the true mean. Hence, the SVD method is particularly useful for situations in which knowledge of the prior mean and prior covariance of the true state (e.g., greenhouse gas profiles) is inadequate.

Ramanathan, Anand K.↗

Radiative Transfer and Retrievals in EOF Domain

The Infrared Atmospheric Sounding Interferometer (IASI) is a hyperspectral sensor with 8461 spectral channels and a nominal spectral resolution of 0.25 cm(sup -1). It is computationally intensive to perform radiative transfer calculations and inversions using all these channels. We will present a Principal Component-based Radiative Transfer Model (PCRTM) and a retrieval algorithm which perform all the necessary calculations in EOF domain. Since the EOFs are orthogonal to each other, only about 100 principal components are needed to represent the information content of the 8461 channels. The PCRTM provides the EOF coefficients and associated derivatives with respect to atmospheric and surface parameters needed by the inversion algorithm. The inversion algorithm is based on a non-linear Levenberg-Marquardt method with climatology covariance and a priori information as constraints. The retrieved parameters include atmospheric temperature, moisture and ozone profiles, cloud parameters, surface skin temperature, and surface emissivities. To make the retrieval system even more compact and stable. The atmospheric vertical profiles are compressed into the EOF space as well. The surface emissivities are also compressed into EOF space.

Liu, Xu↗

Hyperspectral Remote Sensing of Atmosphere and Surface Properties

Atmospheric Infrared Sounder (AIRS), Infrared Atmospheric Sounding Interferometer (IASI), and Cross-track Infrared Sounder (CrIS) are all hyper-spectral satellite sensors with thousands of spectral channels. Top of atmospheric radiance spectra measured by these sensors contain high information content on atmospheric, cloud, and surface properties. Exploring high information content contained in these high spectral resolution spectra is a challenging task due to computation e ort involved in modeling thousands of spectral channels. Usually, only very small fractions (4{10 percent) of the available channels are included in physical retrieval systems or numerical weather forecast (NWP) satellite data assimilations. We will describe a method of simultaneously retrieving atmospheric temperature, moisture, cloud, and surface properties using all available spectral channels without sacrificing computational speed. The essence of the method is to convert channel radiance spectra into super-channels by an Empirical Orthogonal Function (EOF) transformation. Because the EOFs are orthogonal to each other, about 100 super-channels are adequate to capture the information content of the radiance spectra. A Principal Component-based Radiative Transfer Model (PCRTM) developed at NASA Langley Research Center is used to calculate both the super-channel magnitudes and derivatives with respect to atmospheric profiles and other properties. There is no need to perform EOF transformations to convert super channels back to spectral space at each iteration step for a one-dimensional variational retrieval or a NWP data assimilation system. The PCRTM forward model is also capable of calculating radiative contributions due to multiple-layer clouds. The multiple scattering effects of the clouds are efficiently parameterized. A physical retrieval algorithm then performs an inversion of atmospheric, cloud, and surface properties in super channel domain directly therefore both reducing the computational need and preserving the information content of the IASI measurements. The inversion algorithm is based on a non-linear Levenberg-Marquardt method with climatology covariance matrices and a priori information as constraints. One advantage of this approach is that it uses all information content from the hyper-spectral data so that the retrieval is less sensitive to instrument noise and eliminates the need for selecting a sub-set of the channels.

Liu, Xu↗