Linked Open Data Publication Strategies: Application in Networking Performance Measurement Data
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National Geothermal Data System: Transforming the Discovery, Access, and Analytics of Data for Geothermal Exploration
Compendium of Papers from the 38th Workshop on Geothermal Reservoir Engineering Stanford University, Stanford, California February 11-13, 2013 The National Geothermal Data System (NGDS) is a distributed, interoperable network of data collected from state geological surveys across all fifty states and the nation’s leading academic geothermal centers. The system serves as a platform for sharing consistent, reliable, geothermal-relevant technical data with users of all types, while supplying tools relevant for their work. As aggregated data supports new scientific findings, this content-rich linked data ultimately broadens the pool of knowledge available to promote discovery and development of commercial-scale geothermal energy production. Most of the up-front risks associated with geothermal development stem from exploration and characterization of subsurface resources. Wider access to distributed data will, therefore, result in lower costs for geothermal development. NGDS is on track to become fully operational by 2014 and will provide a platform for custom applications for accessing geothermal relevant data in the U.S. and abroad. It is being built on the U.S. Geoscience Information Network (USGIN) data integration framework to promote interoperability across the Earth sciences community. The basic structure of the NGDS employs state-of-the art informatics to advance geothermal knowledge. The following four papers comprising this Open-File Report are a compendium of presentations, from the 38th Annual Workshop on Geothermal Reservoir Engineering, taking place February 11-13, 2013 at Stanford University, Stanford, California. “NGDS Geothermal Data Domain: Assessment of Geothermal Community Data Needs,” outlines the efforts of a set of nationwide data providers to supply data for the NGDS. In particular, data acquisition, delivery, and methodology are discussed. The paper addresses the various types of data and metadata required and why simple links to existing data are insufficient for promoting geothermal exploration. Authors of this paper are Arlene Anderson, US DOE Geothermal Technologies Office, David Blackwell, Southern Methodist University (SMU), Cathy Chickering (SMU), Toni Boyd, Oregon Institute of Technology’s GeoHeat Center, Roland Horne, Stanford University, Matthew MacKenzie, Uberity, Joe Moore, University of Utah, Duane Nickull, Uberity, Stephen Richard, Arizona Geological Survey, and Lisa Shevenell, University of Nevada, Reno. “NGDS User Centered Design: Meeting the Needs of the Geothermal Community,” discusses the user- centered design approach taken in the development of a user interface solution for the NGDS. The development process is research based, highly collaborative, and incorporates state-of-the-art practices to ensure a quality user interface for the widest and greatest utility. Authors of this paper are Harold Blackman, Boise State University, Suzanne Boyd, Anthro-Tech, Kim Patten, Arizona Geological Survey, and Sam Zheng, Siemens Corporate Research. “Fueling Innovation and Adoption by Sharing Data on the DOE Geothermal Data Repository Node on the National Geothermal Data System,” describes the motivation behind the development of the Geothermal Data Repository (GDR) and its role in the NGDS. This includes the benefits of using the GDR to share geothermal data of all types and DOE’s data submission process. Authors of this paper are Jon Weers, National Renewable Energy Laboratory and Arlene Anderson, US DOE Geothermal Technologies Office. Finally, “Developing the NGDS Adoption of CKAN for Domestic & International Data Deployment,” provides an overview of the “Node-In-A-Box” software package designed to provide data consumers with a highly functional interface to access the system, and to ease the burden on data providers who wish to publish data in the system. It is important to note that this software package constitutes a reference implementation and that the NGDS architecture is based on open standards, which means other server software can make resources available, and other client applications can utilize NGDS data. Authors of this paper are Ryan Clark, Arizona Geological Survey (AZGS), Christoph Kuhmuench, Siemens Corporate Research, and Stephen Richard, AZGS.
15 GEOTHERMAL ENERGY↗
Reliable voltage scaled links for compressed data
Systems, apparatuses, and methods for reliably transmitting data over voltage scaled links are disclosed. A computing system includes at least first and second devices connected via a link. In one implementation, if a data block can be compressed to less than or equal to half the original size of the data block, then the data block is compressed and sent on the link in a single clock cycle rather than two clock cycles. If the data block cannot be compressed to half the original size, but if the data block can be compressed enough to include error correction code (ECC) bits without exceeding the original size, then ECC bits are added to the compressed block which is sent on the link at a reduced voltage. The ECC bits help to correct for any errors that are generated as a result of operating the link at the reduced voltage.
42 ENGINEERING↗
Signal Processing of Multiplexed Optical PWM Signals for Sensor Arrays in Nuclear Environments
Safe and effective generation of terrestrial nuclear power greatly benefits from the actionable data provided by the array of sensors located throughout a plant to provide a holistic online indication of reactor operation. This array includes sensors for monitoring coolant flow and pressure, temperature and heat transfer, radiation levels, structure health monitoring, and other critical parameters for reactor operation. While sensors capable of measuring these parameters have been developed, the electronics used in the pre-amplification and analog-to-digital conversion of the small signals they produce are extremely sensitive and susceptible to damage by high-temperatures and radiation environments nuclear reactors encounter while generating power. The small signals from sensors in nuclear power plants (NPPs) are transmitted over long cable runs which introduce dispersion artifacts into the signals of interest as well as electromagnetic interference (EMI) from lighting fixtures, pumps, mains electricity, and other equipment. To overcome these challenges, a front-end digitization (FREND) platform has been developed to use radiation-tolerant electronics to multiplex, amplify, and optically encode signals from an array of sensors for transmission over an optical fiber to mitigate dispersion and EMI artifacts from long runs of electrical cabling. To recover the optically transmitted data, a signal processing scheme based on 1-dimensional template matching to an indexing channel is described herein and demonstrated to have an effective bit-depth of 9.2 bits (1%). This scheme has been validated in proof-of-concept, non-nuclear testing and preliminary experimental results show good agreement between the measured optical output and and sensor input signals. The FREND system represents a low-loss data link between sensors in nuclear environments and data acquisition hardware which is aimed at improving the signal-to-noise ratio of the data acquired from these sensors to provide better information to operators and researchers.
Sweeney, Dan↗
Super-Resolution for Renewable Energy Resource Data with Climate Change Impacts (Sup3rCC)
The Super-Resolution for Renewable Energy Resource Data with Climate Change Impacts (Sup3rCC) data is a collection of 4km hourly wind, solar, temperature, humidity, and pressure fields for the contiguous United States under various climate change scenarios. Sup3rCC is downscaled Global Climate Model (GCM) data. The downscaling process was performed using a generative machine learning approach called sup3r: Super-Resolution for Renewable Energy Resource Data (linked below as "Sup3r GitHub Repo"). The data includes both historical and future weather years, although the historical years represent the historical climate, not the actual historical weather that we experienced. You cannot use Sup3rCC data to study historical weather events, although other sup3r datasets may be intended for this. The Sup3rCC data is intended to help researchers study the impact of climate change on energy systems with high levels of wind and solar capacity. Please note that all climate change data is only a representation of the possible future climate and contains significant uncertainty. Analysis of multiple climate change scenarios and multiple climate models can help quantify this uncertainty.
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LinkML: an open data modeling framework
Background Scientific research relies on well-structured, standardized data; however, much of it is stored in formats such as free-text lab notebooks, nonstandardized spreadsheets, or data repositories. This lack of structure challenges interoperability, making data integration, validation, and reuse difficult. Findings LinkML (Linked Data Modeling Language) is an open framework that simplifies the process of authoring, validating, and sharing data. LinkML can describe a range of data structures, from flat, list-based models to complex, interrelated, and normalized models that utilize polymorphism and compound inheritance. It offers an approachable syntax that is not tied to any one technical architecture and can be integrated seamlessly with many existing frameworks. The LinkML syntax provides a standard way to describe schemas, classes, and relationships, allowing modelers to build well-defined, stable, and optionally ontology-aligned data structures. Once defined, LinkML schemas may be imported into other LinkML schemas. These key features make LinkML an accessible platform for interdisciplinary collaboration and a reliable way to define and share data semantics. Conclusions LinkML helps reduce heterogeneity, complexity, and the proliferation of single-use data models while simultaneously enabling compliance with FAIR (Findable, Accessible, Interoperable, and Reusable) data standards. LinkML has seen increasing adoption in various fields, including biology, chemistry, biomedicine, microbiome research, finance, electrical engineering, transportation, and commercial software development. In short, LinkML makes implicit models explicitly computable and allows data to be standardized at their origin. LinkML documentation and code are available at https://linkml.io/.
AI-ready data↗
Recrystallization driven softening and heating rate dependencies of FeCrAl nuclear fuel cladding during accident transients
A refined understanding of FeCrAl cladding behavior during rapid transients is critical for its potential deployment in light-water reactors. Current assessments focus on transient burst testing metrics such as balloon geometry, burst temperature, and hoop stress, often used as proxies for simpler conventional tensile properties. However, directly correlating isothermal tensile and creep data with accident transient scenarios remains a challenge, although it is essential for high fidelity model development. Recent modeling based on tensile tests up to 800 °C, conducted with both immediate loading and a 10-minute soak, showed that immediate loading better predicts experimental burst temperatures, indicating a thermal softening effect. Building upon this observation, the current study connects transient performance, microstructural evolution, and high-temperature tensile properties by leveraging results from C26M claddings burst tests performed at heating rates of 1–50 °C/s and hoop stresses from 25 to 100 MPa. At 25 MPa, rupture temperatures varied by only 6 °C, but at 100 MPa, the difference reached 116 °C, with faster heating yielding higher burst temperatures. Microstructural analysis identified recrystallization as the primary cause of heating rate-dependent softening, eliminating prior cold-working. In-situ thermomechanical data linked ballooning onset to localized instabilities, similar to ultimate tensile strength behavior in conventional tensile tests. High heating rates correlated with immediate loading tensile data, while lower rates matched soaked data. Furthermore, by linking burst performance to microstructural evolution and tensile properties, this work provides a foundation for more accurate modeling of FeCrAl claddings and potentially other Fe-based materials under accident conditions.
11 - NUCLEAR FUEL CYCLE AND FUEL MATERIALS↗
Architecture and method for a burst buffer using flash technology
A parallel supercomputing cluster includes compute nodes interconnected in a mesh of data links for executing an MPI job, and solid-state storage nodes each linked to a respective group of the compute nodes for receiving checkpoint data from the respective compute nodes, and magnetic disk storage linked to each of the solid-state storage nodes for asynchronous migration of the checkpoint data from the solid-state storage nodes to the magnetic disk storage. Each solid-state storage node presents a file system interface to the MPI job, and multiple MPI processes of the MPI job write the checkpoint data to a shared file in the solid-state storage in a strided fashion, and the solid-state storage node asynchronously migrates the checkpoint data from the shared file in the solid-state storage to the magnetic disk storage and writes the checkpoint data to the magnetic disk storage in a sequential fashion.
97 MATHEMATICS AND COMPUTING↗
Massively scalable Kerr comb-driven silicon photonic link
Abstract The growth of computing needs for artificial intelligence and machine learning is critically challenging data communications in today’s data-centre systems. Data movement, dominated by energy costs and limited ‘chip-escape’ bandwidth densities, is perhaps the singular factor determining the scalability of future systems. Using light to send information between compute nodes in such systems can dramatically increase the available bandwidth while simultaneously decreasing energy consumption. Through wavelength-division multiplexing with chip-based microresonator Kerr frequency combs, independent information channels can be encoded onto many distinct colours of light in the same optical fibre for massively parallel data transmission with low energy. Although previous high-bandwidth demonstrations have relied on benchtop equipment for filtering and modulating Kerr comb wavelength channels, data-centre interconnects require a compact on-chip form factor for these operations. Here we demonstrate a massively scalable chip-based silicon photonic data link using a Kerr comb source enabled by a new link architecture and experimentally show aggregate single-fibre data transmission of 512 Gb s −1 across 32 independent wavelength channels. The demonstrated architecture is fundamentally scalable to hundreds of wavelength channels, enabling massively parallel terabit-scale optical interconnects for future green hyperscale data centres.
Rizzo, Anthony (ORCID:000000034752797X)↗
Embedded calibration system for the DIII-D Langmuir probe analog fiber optic links
This paper describes a generally applicable technique for simultaneously measuring offset and gain of 64 analog fiber optic data links used for the DIII-D fixed Langmuir probes by embedding a reference voltage waveform in the optical transmitted signal before every tokamak shot. The calibrated data channels allow calibration of the power supply control fiber optic links as well. The array of fiber optic links and the embedded calibration system described here makes possible the use of superior modern data acquisition electronics in the control room.
46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗
Residential agricultural pesticide exposures and risks of preeclampsia
Highlights: • Pesticides and preeclampsia have been rarely investigated. • Studied were >200,000 births and exposures to >500 pesticides. • There was a general lack of association between pesticide exposures and preeclampsia. • It is possible that unobserved early fetal loss may have biased risk estimates. We investigated risks of preeclampsia phenotypes from potential residential pesticide exposures, including 543 individual chemicals and 69 physicochemical groupings that were applied in the San Joaquin Valley of California during the study period, 1998–2011. The study population was derived from birth certificate data linked with Office of Statewide Health Planning and Development maternal and infant hospital discharge data. The following numbers of women with preeclampsia phenotypes were identified: 1045 with superimposed (pre-existing hypertension with preeclampsia) preeclampsia (265 with gestational weeks 20–31 and 780 with gestational weeks 32–36); 3471 with severe preeclampsia (824 with gestational weeks 20–31 and 2647 with gestational weeks 32–36); and 2780 with mild preeclampsia (207 with gestational weeks 20–31 and 2573 with gestational weeks 32–36). The reference population for these groups was 197,461 women who did not have diabetes (gestational or pre-existing), did not have any hypertensive disorder, and who delivered at 37 weeks or later. The frequency of any exposure was lower or about the same in each preeclampsia case group (further delineated by gestational age), and month time period, relative to the frequency in reference population controls. Nearly all odds ratios were below 1.0 for these any vs no exposure comparisons. This study showed a general lack of increased risks between a range of agriculture pesticide exposures near women's residences and various preeclampsia phenotypes.
60 APPLIED LIFE SCIENCES↗
Ultra-High-Sensitivity Fiber-Optic Links STL-32-14 / STL-18-15, Year 2 of 2
Presentation describes project to develop analog fiber-optic data links based on high-sensitivity electro-optic modulators, in order to improve recording of small voltage signals in electrically noisy environments, improve the fieldability of novel modulator structures, and improve the demodulation and recording of small signals, which will enable the fielding of improved fiber links across a broad range of experimental facilities.
46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗
Scaling Irregular Applications through Data Aggregation and Software Multithreading
Bioinformatics, data analytics, semantic databases, knowledge discovery are emerging high performance application areas that exploit dynamic, linked data structures such as graphs, unbalanced trees or unstructured grids. These data structures usually are very large, requiring significantly more memory than available on single shared memory systems. Additionally, these data structures are difficult to partition on distributed memory systems. They also present poor spatial and temporal locality, thus generating unpredictable memory and network accesses. The Partitioned Global Address Space (PGAS) programming model seems suitable for these applications, because it allows using a shared memory abstraction across distributed-memory clusters. However, current PGAS languages and libraries are built to target regular remote data accesses and block transfers. Furthermore, they usually rely on the Single Program Multiple Data (SPMD) parallel control model, which is not well suited to the fine grained, dynamic and unbalanced parallelism of irregular applications. In this paper we present {\bf GMT} (Global Memory and Threading library), a custom runtime library that enables efficient execution of irregular applications on commodity clusters. GMT integrates a PGAS data substrate with simple fork/join parallelism and provides automatic load balancing on a per node basis. It implements multi-level aggregation and lightweight multithreading to maximize memory and network bandwidth with fine-grained data accesses and tolerate long data access latencies. A key innovation in the GMT runtime is its thread specialization (workers, helpers and communication threads) that realize the overall functionality. We compare our approach with other PGAS models, such as UPC running using GASNet, and hand-optimized MPI code on a set of typical large-scale irregular applications, demonstrating speedups of an order of magnitude.
Aggregation↗
A Simple Standard for Sharing Ontological Mappings (SSSOM)
Abstract Despite progress in the development of standards for describing and exchanging scientific information, the lack of easy-to-use standards for mapping between different representations of the same or similar objects in different databases poses a major impediment to data integration and interoperability. Mappings often lack the metadata needed to be correctly interpreted and applied. For example, are two terms equivalent or merely related? Are they narrow or broad matches? Or are they associated in some other way? Such relationships between the mapped terms are often not documented, which leads to incorrect assumptions and makes them hard to use in scenarios that require a high degree of precision (such as diagnostics or risk prediction). Furthermore, the lack of descriptions of how mappings were done makes it hard to combine and reconcile mappings, particularly curated and automated ones. We have developed the Simple Standard for Sharing Ontological Mappings (SSSOM) which addresses these problems by: (i) Introducing a machine-readable and extensible vocabulary to describe metadata that makes imprecision, inaccuracy and incompleteness in mappings explicit. (ii) Defining an easy-to-use simple table-based format that can be integrated into existing data science pipelines without the need to parse or query ontologies, and that integrates seamlessly with Linked Data principles. (iii) Implementing open and community-driven collaborative workflows that are designed to evolve the standard continuously to address changing requirements and mapping practices. (iv) Providing reference tools and software libraries for working with the standard. In this paper, we present the SSSOM standard, describe several use cases in detail and survey some of the existing work on standardizing the exchange of mappings, with the goal of making mappings Findable, Accessible, Interoperable and Reusable (FAIR). The SSSOM specification can be found at http://w3id.org/sssom/spec. Database URL: http://w3id.org/sssom/spec
96 KNOWLEDGE MANAGEMENT AND PRESERVATION↗
Case Study: Field Evaluation of a Low-Cost Circuit-Level Electrical Submetering System
Circuit-level metering technologies provide the ability to monitor individual circuits within an electrical panel in a building, providing detailed power and energy consumption data at a much more granular level than was previously achievable in a cost-effective manner. While the fundamental hardware components of circuit-level—split-core current transformers (CTs) and power monitoring meters—have existed for some time, the new offerings in the market have tightly integrated these components, lower costs, and have streamlined data organization, transport, and access via software solutions accessible through web and application programming interfaces (API). NREL evaluated Meazon’s single-circuit metering system. The evaluation of the equipment under test (EUT) focused on three aspects: (1) accuracy of the data provided by the system, (2) ease of installation of this technology and ease of data integration into existing U.S. General Services Administration (GSA) analytics platforms, and (3) total cost of ownership and cost-effectiveness of the technology. The metering technology was tested in a field deployment where it was installed in low and high-voltage commercial electrical panels in the César E. Chávez Memorial Building in Denver, Colorado. The goals were to assess the metering accuracy, the ease of installation and data retrieval, and the total cost of ownership and cost-effectiveness. This technology proved easy to install by a certified electrician who completed the install of 6 meters in 2 separate panels (120/208 V and 277/480 V) and 2 circuit disconnects (along with associated commissioning) at the César E. Chávez Memorial Building in less than one day. The technology was installed in high- and low-voltage panels and with limited space in the electrical room, demonstrating the applicability of this technology to almost all commercial buildings in the GSA portfolio. Primary considerations for this technology include appropriate sizing of CTs for each circuit, selection of loads/circuits/panels that are of high value for detailed submetering (e.g., tailored for high-load devices), and how GSA would like to integrate these data with its existing energy management infrastructure. Through the field evaluation, we demonstrated data integration from the vendor system into the primary software component on the GSA enterprise-level energy management and information system, GSA Link. Data from the circuit-level metering were integrated into this platform and used to perform FDD. This demonstrated the ability of the EUT to augment existing energy management and information systems in buildings where GSA Link is deployed and provides a pathway for delivering FDD at other buildings throughout the portfolio.
29 ENERGY PLANNING, POLICY, AND ECONOMY↗
A data ecosystem to support machine learning in materials science
Facilitating the application of machine learning to materials science problems requires enhancing the data ecosystem to enable discovery and collection of data from many sources, automated dissemination of new data across the ecosystem, and the connecting of data with materialsspecific machine learning models. Here, we present two projects, the Materials Data Facility (MDF) and the Data and Learning Hub for Science (DLHub), that address these needs. We use examples to show how MDF and DLHub capabilities can be leveraged to link data with machine learning models and how users can access those capabilities through web and programmatic interfaces.
36 MATERIALS SCIENCE↗
Natural Gas Fugitive Leak Detection Using an Unmanned Aerial Vehicle: Measurement System Description and Mass Balance Approach
Natural gas is an abundant resource across the United States, of which methane (CH4) is the main component. About 2% of extracted CH4 is lost through leaks. The Remote Methane Leak Detector (RMLD)-Unmanned Aerial Vehicle (UAV) system was developed to investigate natural gas fugitive leaks in this study. The system is composed of three major technologies: miniaturized RMLD (mini-RMLD) based on Backscatter Tunable Diode Laser Absorption Spectroscopy (TDLAS), an autonomous quadrotor UAV and simplified quantification and localization algorithms. With a miniaturized, downward-facing RMLD on a small UAV, the system measures the column-integrated CH4 mixing ratio and can semi-autonomously monitor CH4 leakage from sites associated with natural gas production, providing an advanced capability in detecting leaks at hard-to-access sites compared to traditional manual methods. Automated leak characterization algorithms combined with a wireless data link implement real-time leak quantification and reporting. This study placed particular emphasis on the RMLD-UAV system description and the quantification algorithm development based on a mass balance approach. Early data were gathered to test the prototype system and to evaluate the algorithm performance. The quantification algorithm derived in this study tended to underestimate the gas leak rates and yielded unreliable estimations in detecting leaks under 7 × 10 − 6 m3/s (~1 Standard Cubic Feet per Hour (SCFH)). Zero-leak cases can be ascertained via a skewness indicator, which is unique and promising. The influence of the systematic error was investigated by introducing simulated noises, of which Global Positioning System (GPS) noise presented the greatest impact on leak rate errors. The correlation between estimated leak rates and wind conditions were investigated, and steady winds with higher wind speeds were preferred to get better leak rate estimations, which was accurate to approximately 50% during several field trials. High precision coordinate information from the GPS, accurate wind measurements and preferred wind conditions, appropriate flight strategy and the relative steady survey height of the system are the crucial factors to optimize the leak rate estimations.
03 NATURAL GAS↗
Better models by discarding data?
Making the most of hard-won data in protein crystallography: to keep or not to keep, that is the question. In macromolecular X-ray crystallography, typical data sets have substantial multiplicity. This can be used to calculate the consistency of repeated measurements and thereby assess data quality. Recently, the properties of a correlation coefficient, CC{sub 1/2}, that can be used for this purpose were characterized and it was shown that CC{sub 1/2} has superior properties compared with ‘merging’ R values. A derived quantity, CC*, links data and model quality. Using experimental data sets, the behaviour of CC{sub 1/2} and the more conventional indicators were compared in two situations of practical importance: merging data sets from different crystals and selectively rejecting weak observations or (merged) unique reflections from a data set. In these situations controlled ‘paired-refinement’ tests show that even though discarding the weaker data leads to improvements in the merging R values, the refined models based on these data are of lower quality. These results show the folly of such data-filtering practices aimed at improving the merging R values. Interestingly, in all of these tests CC{sub 1/2} is the one data-quality indicator for which the behaviour accurately reflects which of the alternative data-handling strategies results in the best-quality refined model. Its properties in the presence of systematic error are documented and discussed.
75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗