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At least 55 records · Page 3

Molecular Dynamical and Quantum Mechanical Exploration of the Site-Specific Dynamics of Cy3 Dimers Internally Linked to dsDNA

Performing spectroscopic measurements on biomolecules labeled with fluorescent probes is a powerful approach to locating the molecular behavior and dynamics of large systems at specific sites within their local environments. The indocarbocyanine dye Cy3 has emerged as one of the most commonly used chromophores. The incorporation of Cy3 dimers into DNA enhances experimental resolution owing to the spectral characteristics influenced by the geometric orientation of excitonically coupled monomeric units. Various theoretical models and simulations have been utilized to aid in the interpretation of the experimental spectra. In this study, we employ all-atom molecular dynamics simulations to study the structural dynamics of Cy3 dimers internally linked to the dsDNA backbone. We used quantum mechanical calculations to derive insights from both the linear absorption spectra and the circular dichroism data. Furthermore, we explore potential limitations within a commonly used force field for cyanine dyes. The molecular dynamics simulations suggest the presence of four possible Cy3 dimeric populations. The spectral simulations on the four populations show one of them to agree better with the experimental signatures, suggesting it to be the dominant population. Furthermore, the relative orientation of Cy3 in this population compares very well with previous predictions from the Holstein–Frenkel Hamiltonian model.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH

Thermal and mechanical treatments for nickel and some nickel-base alloys: Effects on mechanical properties

This report deals with heat treating and working nickel and nickel-base alloys, and with the effects of these operations on the mechanical properties of the materials. The subjects covered are annealing, solution treating, stress relieving, stress equalizing, age hardening, hot working, cold working, combinations of working and heat treating (often referred to as thermomechanical treating), and properties of the materials at various temperatures. The equipment and procedures used in working the materials are discussed, along with the common problems that may be encountered and the precautions and corrective measures that are available.

Hall, A. M.

The orbital mechanics of flight mechanics

A reference handbook on modern dynamic orbit theory is presented. Starting from the most basic inverse-square law, the law of gravity for a sphere is developed, and the motion of point masses under the influence of a sphere is considered. The reentry theory and the orbital theory are discussed along with the relative motion between two bodies in orbit about the same planet. Relative-motion equations, rectangular coordinates, and the mechanics of simple rigid bodies under the influence of a gravity gradient field are also discussed.

Dunning, R. S.

Toughening mechanisms in elastomer-modified epoxies. I - Mechanical studies. II - Microscopy studies

Tensile dilatometry at constant displacement rates is presently used to ascertain whether voiding, crazing or shear banding are the deformation mechanisms at work in the toughening of brittle epoxies through the addition of an elastomeric phase. The results obtained for epoxies toughened by various levels of several types of carbonyl-terminated butadiene nitrile liquid rubber indicate that, at low strain rates, the rubber particles simply enhance shear deformation; at sufficiently high strain rates, the particles cavitate and promote further shear deformation. Examinations of these materials are conducted by means of SEM, TEM, and optical microscopy in the second part of this study. Toughening is hypothesized to involve cavitation's relieving of triaxial tension at the crack tip, as well as shear band formation, which creates a plastic zone.

Yee, A. F.

From linear mechanics to nonlinear mechanics

Consideration is given to the techniques used in telecommunication where a nonlinear system (the modulator) results in a linear transposition of a signal. It is then shown that a similar method permits linearization of electromechanical devices or nonlinear mechanical devices. A sweep function plays the same role as the carrier wave in radio-electricity. The linearizations of certain nonlinear functionals are presented.

RESEARCH TECHNIQUE, MATHEMATICS

Mechanisms of Bone Mineralization and Effects of Mechanical Loading

The data suggest that PTH and PKC inhibit nodule formation, and that alternative energy sources are utilized by osteoblasts in the process of mineralization. The conditions and techniques to grow, fix, photograph, and measure bone mineralization in vitro were defined. The results are presently in preliminary form and require further assessment as follows; quantitate the surface area of nodules + treatments via computer-aided image analysis; use PTH + inhibitors of signaling pathways to determine the mechanism of nodule formation; determine how protein kinase C is involved as a promotor of nodule formation; cell proliferation vs. cell death affected by modulation of signal transduction (i.e., PTH, enzyme inhibitors and activators); identify mRNA induced or decreased in response to PTH and signaling modulators that encode proteins that regulate cell morphology, proliferation, and nodule formation. Therefore, several follow-up studies between the laboratories at NASA-Ames Research Center and my laboratory at the University of Illinois have been initiated.

Babich, Michael

Thigmomorphogenesis: anatomical, morphological and mechanical analysis of genetically different sibs of Pinus taeda in response to mechanical perturbation

Twenty-three open pollinated families (half-sibs) and four controlled pollinated families (full-sibs) of Pinus taeda L. (loblolly pine) were grown in a greenhouse and analyzed for changes induced by mechanical perturbation (MP). These changes included inhibition of stem and needle elongation, bracing of branch nodes, and increased radial growth in the direction of the MP. Inhibition of stem elongation was the least variable feature measured. Leaf extension and stem diameter were highly variable between half-sibs. MP induced increased drag in greenhouse grown P. taeda in wind-tunnel tests. In P. taeda, MP induced decreased flexibility and increased elasticity and plasticity of the stem. The increased radial growth of the stems overrode the increase in elasticity, resulting in an overall decrease in flexibility. MP trees had a higher rupture point than non-MP controls. Increased radial growth is a result of more rapid cell divisions of the vascular cambium, resulting in increased numbers of tracheids. The decreased leader growth is partly due to a decreased tracheid length in response to MP.

Non-NASA Center

On the Onset Mechanism for Solar Coronal Jets, and Implications for the Onset Mechanism for CME-Producing Eruptions

Large-scale solar eruptions often include ejection of a filament, a solar flare, and expulsion of a coronal mass ejection (CME). Unravelling the magnetic processes that build up the free energy for these eruptions and trigger that energy's release in the eruption is a continuing challenge in solar physics. Such large-scale eruptions are comparatively infrequent, with the moderate level ones (say, GOES M-class events) occurring perhaps once every few days on average during active-activity times, and much less frequently during quieter times. In contrast, solar coronal jets, which are long (~50,000 km), narrow (<~10,000 km), transient (~10---20 min) plasma spires with bright bases and that are seen in soft X-rays and EUV, occur much more frequently, likely several hundred times per day independent of large-scale solar activity level. Recent studies indicate that coronal jets are small-scale versions of large-scale eruptions, often produced by eruption of a small-scale "miniflament," that results in a "miniflare" analogous to a larger typical solar flare, and that sometimes produces a CME analogue (a "narrow CME" or "white-light jet"). Under the assumption that jets are small-scale eruptions, their higher occurrence frequency and faster build-up evolution reveals perhaps fundamental aspects of all eruptions that are not as easy to discern in the more-complex magnetic environment and the slower build up to the larger eruptions. Therefore, the study of coronal jets can provide insights into the onset mechanism of CME-producing large-scale eruptions.

Alphonse C Sterling

Mechanical Actuation Mechanism Design for Cryogenic Microwave Cavities in Axion Dark Matter Searches

Resonant Microwave Cavities are placed in a strong magnetic field at cryogenic temperatures (~.1K) in order to try to convert axions into detectable photons. A major challenge is to tune the cavity to allow no interference with the desired environment used for the experiment, which enables the system to operate near absolute zero and maintain superconductivity, thereby reducing noise as much as possible. My project focuses on developing and testing a low-thermal-conductivity gear reduction system with a 1000:1 ratio for cavity tuning. This gear system could significantly improve the thermal and electromagnetic interference of the tuning mechanism, helping ADMX scan for axions more accurately.

Ortega, Giancarlo [Marquette U.; Fermilab]

Investigation of Isobaric Mixing as a Mechanism for Boundary‐Layer Cloud Formation

This study investigates the potential role of isobaric mixing in the formation of marine boundary layer clouds. Cloud formation theory emphasizes uplift and adiabatic cooling, but recent observations support the existence of small clouds forming at various altitudes, even below the lifting condensation level. Isobaric mixing of air with different thermodynamic properties can generate localized supersaturation. A Gaussian mixing model is employed to simulate this process, considering the correlation between temperature and water vapor. Cloud droplet size distributions from aircraft measurements show a persistent and prominent mode of small droplets at 9 m, and the size of this mode compares favorably with predictions from the model. The results suggests that isobaric mixing plausibly contributes to the formation of clouds, particularly those observed at multiple altitudes with narrow droplet size distributions. This finding highlights the importance of considering isobaric mixing processes in understanding and modeling cloud formation.

54 ENVIRONMENTAL SCIENCES