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At least 55 records · Page 3

Cellular instability in rapid directional solidification - Bifurcation theory

Merchant and Davis performed a linear stability analysis on a model for the directional solidification of a dilute binary alloy valid for all speeds. The analysis revealed that nonequilibrium segregation effects modify the Mullins and Sekerka cellular mode, whereas attachment kinetics has no effect on these cells. In this paper, the nonlinear stability of the steady cellular mode is analyzed. A Landau equation is obtained that determines the amplitude of the cells. The Landau coefficient here depends on both nonequilibrium segregation effects and attachment kinetics. This equation gives the ranges of parameters for subcritical bifurcation (jump transition) or supercritical bifurcation (smooth transition) to cells.

Braun, R. J.↗

Thermal effects in rapid directional solidification - Linear theory

We study the morphological instability of the planar solid/liquid interface for a unidirectionally-solidified dilute binary mixture. We use a model developed by Boettinger et al. (1985, 1986), Aziz (1982), and Jackson et al. (1980), which allows for nonequilibrium effects on the interface through velocity-dependent segregation and attachment kinetics. Two types of instabilities are found in the linear stability analysis: (1) a cellular instability, and (2) an oscillatory instability driven by disequilibrium effects. Merchant and Davis (1990) characterized these instabilities subject to the frozen-temperature approximation (FTA). The present work relaxes the FTA by including the effects of latent heat and the full temperature distribution. Thermal effects slightly postpone the onset of the cellular instability but dramatically postpone the onset of the oscillatory instability; however, the absolute-stability conditions, at which at high speed the cellular and oscillatory instabilities are suppressed, remain unchanged from the FTA.

Huntley, D. A.↗

Oceanic Observations

For many years, merchant ships and the naval fleets of various countries have been the major source of data over and in the open ocean. Oceanographic research experiments and process studies in the field have also contributed to the climatological data bases for the global ocean, but, for the most part, these have been limited in duration and extent. However, over the last 10 years under the auspices of the World Climate Research Program and the International Geosphere Biosphere Program the role of the oceans in global and climate change has taken on increased significance. This has created a need for a considerably improved understanding of the seasonal, interannual, decadal and longer time-scale variability of the physical and biogeochemical attributes of the global ocean. As a result, over the past 10 years several major international field programs have been implemented and have had a tremendous impact on the number of in situ observations obtained for the global ocean. The Tropical Ocean Global Atmosphere (TOGA) program, the World Ocean Circulation Experiment (WOCE), and the Joint Global Ocean Flux Study (JGOFS) were designed with observational, modelling, and process study components aimed at analyzing different aspects of the ocean's role in the coupled climate system. In parallel with the field programs, continuous space-based observations of sea surface temperature, sea surface topography, and sea surface winds spanning nearly a decade or longer have become a reality. During this same time period, numerical ocean models and computational power have advanced to the point where the oceanographic observations, both in situ and remotely sensed, can be assimilated into numerical ocean models in order to provide a four-dimensional (x-y-z-t) depiction of the evolving state of the global ocean.

Busalacchi, Antonio J.↗

Seven-Year SSM/I-Derived Global Ocean Surface Turbulent Fluxes

A 7.5-year (July 1987-December 1994) dataset of daily surface specific humidity and turbulent fluxes (momentum, latent heat, and sensible heat) over global oceans has been retrieved from the Special Sensor Microwave/Imager (SSM/I) data and other data. It has a spatial resolution of 2.0 deg.x 2.5 deg. latitude-longitude. The retrieved surface specific humidity is generally accurate over global oceans as validated against the collocated radiosonde observations. The retrieved daily wind stresses and latent heat fluxes show useful accuracy as verified by those measured by the RV Moana Wave and IMET buoy in the western equatorial Pacific. The derived turbulent fluxes and input variables are also found to agree generally with the global distributions of annual-and seasonal-means of those based on 4-year (1990-93) comprehensive ocean-atmosphere data set (COADS) with adjustment in wind speeds and other climatological studies. The COADS has collected the most complete surface marine observations, mainly from merchant ships. However, ship measurements generally have poor accuracy, and variable spatial coverages. Significant differences between the retrieved and COADS-based are found in some areas of the tropical and southern extratropical oceans, reflecting the paucity of ship observations outside the northern extratropical oceans. Averaged over the global oceans, the retrieved wind stress is smaller but the latent heat flux is larger than those based on COADS. The former is suggested to be mainly due to overestimation of the adjusted ship-estimated wind speeds (depending on sea states), while the latter is suggested to be mainly due to overestimation of ship-measured dew point temperatures. The study suggests that the SSM/I-derived turbulent fluxes can be used for climate studies and coupled model validations.

Chou, Shu-Hsien↗

Impacts of Interannual Climate Variability on Agricultural and Marine Ecosystems

The El Nino - Southern Oscillation (ENSO) is the dominant mode of global interannual climate variability, and seems to be the only mode for which current prediction methods are more skillful than climatology or persistence. The Zebiak and Cane intermediate coupled ocean-atmosphere model has been in use for ENSO prediction for more than a decade, with notable success. However, the sole dependence of its original initialization scheme and the improved initialization on wind fields derived from merchant ship observations proved to be a liability during 1997/1998 El Nino event: the deficiencies of wind observations prevented the oceanic component of the model from reaching the realistic state during the year prior to the event, and the forecast failed. Our work on the project was concentrated on the use of satellite data for improving various stages of ENSO prediction technology: model initialization, bias correction, and data assimilation. Close collaboration with other teams of the IDS project was maintained throughout.

Cane, M. A.↗

A Multiple Resource Inventory of Delaware Using an Airborne Profiling Laser

An airborne profiling laser is used to monitor multiple resources related to landscape structure, both natural and man-made, across regions encompassing hundreds of thousands of hectares. A small, lightweight, inexpensive airborne profiling laser is used to inventory Delaware forests, to estimate impervious surface area statewide, and to locate potentially Suitable Delmarva Fox Squirrel (Scrotum niger cinereus) habitat. Merchantable volume estimates are within 14% of US Forest Service estimates at the county level and within 4% statewide. Total above-ground dry biomass estimates are within 19% of USES estimates at the county level and within 16% statewide. Mature forest stands suitable for reintroduction of the Delmarva Fox Squirrel, an endangered species historically endemic to the eastern shores of Delaware, Maryland, and Virginia, are identified and mapped along the laser transacts. Intersection lengths with various types of impervious surface (roofs, concrete/asphalt) and open water are tallied to estimate percent and areal coverage statewide, by stratum and county. Laser estimates of open water are within 7% of photointerpreted GIS estimates at the county level and within 3% of the GIS at the state level.

Nelson, Ross↗

Satellite Ocean-Color Validation Using Ships of Opportunity

The investigation s main objective is to collect from platforms of opportunity (merchant ships, research vessels) concomitant normalized water-leaving radiance and aerosol optical thickness data over the world s oceans. A global, long-term data set of these variables is needed to verify whether satellite retrievals of normalized water-leaving radiance are within acceptable error limits and, eventually, to adjust atmospheric correction schemes. To achieve this objective, volunteer officers, technicians, and scientists onboard the selected ships collect data from portable SIMBAD and Advanced SIMBAD (SIMBADA) radiometers. These instruments are specifically designed for evaluation of satellite-derived ocean color. They measure radiance in spectral bands typical of ocean-color sensors. The SIMBAD version measures in 5 spectral bands centered at 443, 490, 560, 670, and 870 nm, and the Advanced SIMBAD version in 11 spectral bands centered at 350, 380, 412, 443, 490, 510, 565, 620, 670, 750, and 870 nm. Aerosol optical thickness is obtained by viewing the sun disk like a classic sun photometer. Normalized water-leaving radiance, or marine reflectance, is obtained by viewing the ocean surface through a vertical polarizer in a specific geometry (nadir angle of 45o and relative azimuth angle of 135deg) to minimize direct sun glint and reflected sky radiation. The SIMBAD and SIMBADA data, after proper quality control and processing, are delivered to the SIMBIOS project office for inclusion in the SeaBASS archive. They complement data collected in a similar way by the Laboratoire d'Optique Atmospherique of the University of Lille, France. The SIMBAD and SIMBADA data are used to check the radiometric calibration of satellite ocean-color sensors after launch and to evaluate derived ocean-color variables (i.e., normalized water-leaving radiance, aerosol optical thickness, and aerosol type). Analysis of the SIMBAD and SIMBADA data provides information on the accuracy of satellite retrievals of normalized water-leaving radiance, an understanding of the discrepancies between satellite and in situ data, and algorithms that reduce the discrepancies, contributing to more accurate and consistent global ocean color data sets.

Frouin, Robert↗

Techno-Economic Analysis for GTI's Compact Hydrogen Generator

A technoeconomic analysis of the compact hydrogen generator compared to a traditional steam methane reformer (SMR) was performed for both processes with and without carbon capture. The project goal for the technoeconomic analysis was to demonstrate a minimum of 20% lower CAPEX and 15% lower levelized cost of hydrogen compared to SMR with and without carbon capture. GTI obtained baseline capital and costs for the SMR with and without and methodology to calculate the levelized cost of hydrogen from an IEAGHG Technical Report: 2017-02 Techno-Economic Evaluation of SMR Based Standalone (Merchant) Hydrogen Plant with CCS. This methodology was then applied to GTI’s compact hydrogen generator using direct material costs previously obtained from a reputable engineering procurement and construction company, CB&I Howe-Baker. The analysis was performed for plants producing 90MMSCFD (million standard cubic feed per day) of hydrogen. Direct material costs were converted to total installed costs and total capital requirements using the same multiplying factors for both processes. We have found that the direct materials cost of the compact hydrogen generator is less than half the direct materials cost required for SMR without capture, and about one quarter the direct materials cost of SMR with carbon capture. This low materials cost translates into a significant CAPEX savings and lower levelized cost of hydrogen that exceed the goals of the techno-economic assessment. We have found that the CHG has a 43% lower installed cost and capital requirement compared to SMR without capture, that results in a levelized cost of hydrogen that is 19% lower than SMR. When 90% CO2 capture is added to the plants, the advantages is even better. The CHG has a 51% lower installed and capital requirement compared to SMR with capture, resulting in a 28% lower levelized cost of hydrogen. A sensitivity analysis was performed and showed natural gas feedstock cost and discount rate to be the main contributors to hydrogen price sensitivity. Given these significant cost advantages, GTI is encouraged to continue to develop the technology and market the economic advantages as well as the efficiency gains and ability to inherently capture CO2.

08 HYDROGEN↗

Impact of Tree Age and Anatomical Fraction on Forest Residue Pyrolysis and Hydrotreating

Utilization of cost-advantaged biomass and waste resources to produce clean, domestic biofuels will be a key factor in decarbonizing transportation in the United States. This study investigates how the distribution of anatomical fractions (stem wood, bark, needles, branches) from pine forest residues of different ages impacts pyrolysis and hydrotreating processes, including product composition, carbon efficiency, economics, and overall sustainability. Commercially sourced 13- and 23-year-old loblolly pine residues were chosen to represent available resources; whole tree thinnings, and tops and branches from merchantable timber, respectively. Detailed characterization of the residue samples, product distributions, bio-oil, char, and gas characterization data are presented for 13 experiments, including the individual fractions, blends, and air-classified samples to reduce ash content. Pyrolysis mass balances averaged 97 +/- 3%. As expected, bio-oil yields were lower for the bark, needles, and blends with high proportions of these (53-56% dry basis), and highest for the debarked stem wood (67-71% dry basis). Lower yields were attributed to the high ash content of the needles, but also to the high lignin content in the bark (>50%), which is hypothesized to have led to increased char formation during pyrolysis. Higher-oil yield was generally correlated with total volatiles, hydrogen, oxygen, glucan, and mannan; somewhat correlated with xylan and acetyl content; and negatively correlated with total carbon, fixed carbon, nitrogen, sulfur, and extractives. Air classification of the residues was effective in reducing ash content (1.5% to 0.64%), extractives (~7% to 2%), and sulfur (0.04% to 0.02%), resulting in a small increase in yield, a significant increase in the GC-detectable proportion of oil (27% to 34%) and a net economic benefit. These experimental results were used to conduct technoeconomic and life cycle analyses, which are also summarized here.

biofuels↗

Biofuels as Heavy Fuel Oil Substitutes in the Maritime Sector: Findings and Potential Pathways

The United States Department of Energy has commissioned four national laboratories to evaluate the feasibility of biofuels in the maritime sector. This effort is briefly described including the overall project goals, structure and aims. The large two-stroke crosshead engines used to power large merchant vessels were of particular interest since they can burn lower combustion quality fuels relative to four-stroke engines. This characteristic allows for consideration of pyrolysis oils and hydrothermal liquefaction (HTL) oils which are feedstock agnostic and, in the raw state, are more economical compared to distillate drop-in fuels. Pyrolysis and HTL oils are collectively known as bio-intermediates since they require additional processing for use in distillate fuel systems. The key limiting feature is that these bio-intermediate fuels will cause asphaltene precipitation when blended with heavy fuel oils (HFOs) such as very low sulfur fuel oil (VLSFO) unless they are upgraded to remove water and oxygenates. Economics are the key driver at this point in time, and preliminary techno-economic analyses (TEAs) indicate that bio-intermediates have potentially lower cost relative to other biofuels such as biodiesel and renewable diesel. Additionally, life cycle analyses (LCAs) of feedstocks and pathways show the life cycle carbon reduction benefit relative to heavy fuel oils. In addition to TEA and LCA results, we also present on the technical feasibility of these fuels. These studies have focused on the properties of biofuel blends with VLSFO that are critical to the fuel systems of maritime vessels fueled with HFOs. These properties include the compatibility with fuel system metals, viscosity, and blend stability. Aging studies with blends of VLSFO with biodiesel, HTL, and pyrolysis oils are also presented. Future efforts being planned to conduct additional biofuel testing, including the use of biofuels as pilot fuels in zero carbon shipping options fueled with ammonia and methanol, ship-based demonstrations, and bioresource competition studies.

Kass, Michael↗

Pumping Iron: A Multi-omics Analysis of Two Extremophilic Algae Reveals Iron Economy Management

Marine algae are responsible for half of the world's primary productivity, but this critical carbonsink is often constrained by insufficient iron. One species of marine algae, Dunaliella tertiolecta, isremarkable for its ability to maintain photosynthesis and thrive in low-iron environments. A relatedspecies, Dunaliella salina Bardawil, shares this attribute but is an extremophile found in hypersaline environments. To elucidate how algae manage their iron requirements, we produced highquality genome assemblies and transcriptomes for both species to serve as a foundation for acomparative multi-omics analysis. We identified a host of iron-uptake proteins in both species,including a massive expansion of transferrins and a novel family of siderophore-iron uptakeproteins. Complementing these multiple iron-uptake routes, ferredoxin functions as a large ironreservoir that can be released by induction of flavodoxin. Proteomic analysis revealed reducedinvestment in the photosynthetic apparatus coupled with remodeling of antenna proteins bydramatic iron-deficiency induction of TIDI1, a light harvesting complex protein found also in otherchlorophytes. These combinatorial iron scavenging and sparing strategies make Dunaliellaunique among photosynthetic organisms

iron homeostasis, phytoplankton, Iron starvation i↗

Automated reaction kinetics and network exploration (Arkane): A statistical mechanics, thermodynamics, transition state theory, and master equation software

The open-source statistical mechanics software described here, Arkane–Automated Reaction Kinetics and Network Exploration–facilitates computations of thermodynamic properties of chemical species, high-pressure limit reaction rate coefficients, and pressure-dependent rate coefficient over multi-well molecular potential energy surfaces (PES) including the effects of collisional energy transfer on phenomenological kinetics. Arkane can use estimates to fill in information for molecules or reactions where quantum chemistry information is missing. The software solves the internal energy master equation for complex unimolecular reaction systems. Inputs to the software include converged electronic structure computations performed by the user using a variety of supported software packages (Gaussian, Molpro, Orca, TeraChem, Q-Chem, Psi4). The software outputs high-pressure limit rate coefficients and pressure-dependent phenomenological rate coefficients, as well as computed thermodynamic properties (enthalpy, entropy, and constant pressure heat capacity) with added energy corrections. Some of the key features of Arkane include treatment of 1D, 2D or ND hindered internal rotation modes, treatment of free internal rotation modes, quantum tunneling effect consideration, transition state theory (TST) and Rice-Ramsperger-Kassel-Marcus (RRKM) rate coefficient computations, master equation solution with four implemented methods, inverse-Laplace transform of high-pressure limit rate coefficients into the energy domain, energy corrections based on bond-additivity or isodesmic reactions, automated and efficient PES exploration, and PES sensitivity analysis. The present work describes the design of Arkane, how it should be used, and refers to the theory that it employs. Arkane is distributed via the RMG-Py software suite (https://github.com/ReactionMechanismGenerator/RMG-Py).

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

An optimized ChIP-Seq framework for profiling histone modifications in Chromochloris zofingiensis

The eukaryotic green alga Chromochloris zofingiensis is a reference organism for studying carbon partitioning and a promising candidate for the production of biofuel precursors. Recent transcriptome profiling transformed our understanding of its biology and generally algal biology, but epigenetic regulation remains understudied and represents a fundamental gap in our understanding of algal gene expression. Chromatin immunoprecipitation followed by deep sequencing (ChIP-Seq) is a powerful tool for the discovery of such mechanisms, by identifying genome-wide histone modification patterns and transcription factor-binding sites alike. Here, we established a ChIP-Seq framework for Chr. zofingiensis yielding over 20 million high-quality reads per sample. The most critical steps in a ChIP experiment were optimized, including DNA shearing to obtain an average DNA fragment size of 250 bp and assessment of the recommended formaldehyde concentration for optimal DNA-protein cross-linking. We used this ChIP-Seq framework to generate a genome-wide map of the H3K4me3 distribution pattern and to integrate these data with matching RNA-Seq data. In line with observations from other organisms, H3K4me3 marks predominantly transcription start sites of genes. Our H3K4me3 ChIP-Seq data will pave the way for improved genome structural annotation in the emerging reference alga Chr. zofingiensis.

59 BASIC BIOLOGICAL SCIENCES↗

An Algal Nutrient‐Replete, Optimized Medium for Fast Growth and High Triacylglycerol Accumulation

Microalgae are promising sources to sustainably meet the global needs for energy and products. Algae grow under different trophic conditions, where nutritional status regulates biosynthetic pathways, energy production, and growth. The green alga Chromochloris zofingiensis has strong economic potential because it co-produces biofuel precursors and the high-value antioxidant astaxanthin while accumulating biomass when grown mixotrophically. As an emerging reference alga for photosynthesis, metabolism, and bioproduction, C. zofingiensis needs a defined, optimized medium to standardize experiments during fast growth for batch cultivation. Because the interplay of glucose treatment (+Glc) and mineral deficiency influences photosynthesis, growth, and the production of lipids and astaxanthin, we designed a replete nutrient medium tailored to the C. zofingiensis cellular ionome. We combined inductively coupled plasma mass spectrometry (ICP-MS) and +Glc growth curves to determine a medium that is nutrient replete for at least 5 days of +Glc logarithmic growth. We found that there are high nutritional needs for phosphorus and sulfur during mixotrophy. Iron was the only element measured for which the cellular concentration correlated with exogenous concentration and was iteratively adjusted until the cellular ionome was consistent through the logarithmic growth phase. This Chromochloris-Optimized Ratio of Elements (CORE) medium supports fast growth and high biomass and lipid accumulation without causing excess nutrient toxicity. This defined, nutrient-replete standard is important for future C. zofingiensis investigations and can be adapted for other species to support high biomass for batch cultivation. The method used to develop CORE medium shows how ionomics informs replicable media design and may be applied in industrial settings to inform cost-effective biofuel production.

Jeffers, Tim L. [University of California, Berkele↗

Chlamydomonas cells transition through distinct Fe nutrition stages within 48 h of transfer to Fe-free medium

Low iron (Fe) bioavailability can limit the biosynthesis of Fe-containing proteins, which are especially abundant in photosynthetic organisms, thus negatively affecting global primary productivity. Understanding cellular coping mechanisms under Fe limitation is therefore of great interest. For this paper, we surveyed the temporal responses of Chlamydomonas ( Chlamydomonas reinhardtii ) cells transitioning from an Fe-rich to an Fe-free medium to document their short and long-term adjustments. While slower growth, chlorosis and lower photosynthetic parameters are evident only after one or more days in Fe-free medium, the abundance of some transcripts, such as those for genes encoding transporters and enzymes involved in Fe assimilation, change within minutes, before changes in intracellular Fe content are noticeable, suggestive of a sensitive mechanism for sensing Fe. Promoter reporter constructs indicate a transcriptional component to this immediate primary response. With acetate provided as a source of reduced carbon, transcripts encoding respiratory components are maintained relative to transcripts encoding components of photosynthesis and tetrapyrrole biosynthesis, indicating metabolic prioritization of respiration over photosynthesis. In contrast to the loss of chlorophyll, carotenoid content is maintained under Fe limitation despite a decrease in the transcripts for carotenoid biosynthesis genes, indicating carotenoid stability. These changes occur more slowly, only after the intracellular Fe quota responds, indicating a phased response in Chlamydomonas, involving both primary and secondary responses during acclimation to poor Fe nutrition.

59 BASIC BIOLOGICAL SCIENCES↗

Genetically pliable green algae for bioproduction of modified fatty acids, nutritional therapeutic oils, and biopharmaceuticals

Homologous recombination (HR) is an essential tool for complex metabolic engineering in yeast, but transgene integration into plant and green algal nuclear genomes predominantly occurs by non-homologous end-joining. Species of the closely related, oleaginous trebouxiophytes Auxenochlorella and Prototheca, are unusual among the green algae in that HR is the favored mechanism for DNA integration into the nuclear genome. This property enables locus-specific targeting of gene cassettes encoding multiple enzymes for manipulating existing biochemical pathways or introducing new functions. Genetic malleability, and regulatory approval for human consumption, coupled with robust fermentation performance at industrial scale, establishes Auxenochlorella and Prototheca as prime candidates for algal production of biochemicals and biomaterials. The examples presented here highlight strain improvement and engineering for synthesis of hydroxylated fatty acids for biomaterials, structured triglycerides resembling human milk fat for infant nutrition, very-long-chain mono- and polyunsaturated fatty acids with nutraceutical or therapeutic potential, and cannabinoids for pharmacological applications.

Moseley, Jeffrey L. [University of California, Ber↗