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Architectures Toward Reusable Science Data Systems

Science Data Systems (SDS) comprise an important class of data processing systems that support product generation from remote sensors and in-situ observations. These systems enable research into new science data products, replication of experiments and verification of results. NASA has been building systems for satellite data processing since the first Earth observing satellites launched and is continuing development of systems to support NASA science research and NOAAs Earth observing satellite operations. The basic data processing workflows and scenarios continue to be valid for remote sensor observations research as well as for the complex multi-instrument operational satellite data systems being built today. System functions such as ingest, product generation and distribution need to be configured and performed in a consistent and repeatable way with an emphasis on scalability. This paper will examine the key architectural elements of several NASA satellite data processing systems currently in operation and under development that make them suitable for scaling and reuse. Examples of architectural elements that have become attractive include virtual machine environments, standard data product formats, metadata content and file naming, workflow and job management frameworks, data acquisition, search, and distribution protocols. By highlighting key elements and implementation experience we expect to find architectures that will outlast their original application and be readily adaptable for new applications. Concepts and principles are explored that lead to sound guidance for SDS developers and strategists.

Data Processing↗

Locating Biodiversity Data Through The Global Change Master Directory

The Global Change Master Directory (GCMD) presently holds descriptions for almost 7000 data sets held worldwide. The directory's primary purpose is for data discovery. The information provided through the GCMD's Directory Interchange Format (DIF) is the set of information that a researcher would need to determine if a particular data set could be of value. By offering data set descriptions worldwide in many scientific disciplines - including meteorology, oceanography, ecology, geology, hydrology, geophysics, remote sensing, paleoclimate, solar-terrestrial physics, and human dimensions of climate change - the GCMD simplifies the discovery of data sources. Direct linkages to many of the data sets are also provided. In addition, several data set registration tools are offered for populating the directory. To search the directory, one may choose the Guided Search or Free-Text Search. Two experimental interfaces were also made available with the latest software release - one based on a keyword search and another based on a graphical interface. The graphical interface was designed in collaboration with the Human Computer Interaction Laboratory at the University of Maryland. The latest version of the software, Version 6, was released in April, 1998. It features the implementation of a scheme to handle hierarchical data set collections (parent-child relationships); a hierarchical geospatial location search scheme; a Java-based geographic map for conducting geospatial searches; a Related-URL field for project-related data set collections, metadata extensions (such as more detailed inventory information), etc.; a new implementation of the Isite software; a new dataset language field; hyperlinked email addresses, and more. The key to the continued evolution of the GCMD is in the flexibility of the GCMD database, allowing modifications and additions to made relatively easily to maintain currency, thus providing the ability to capitalize on current technology while importing all existing records. Changes are discussed and approved through an online "interoperability" forum. The next major release of the GCMD is scheduled for early 1999 and will include the incorporation of a new matrix-based interface, a rapid valids-based query system; improvement in the operations facility - important for future distributed options; new streamlined code for greater performance and maintainability; improvements in the handling of seven current fields proposed through the interoperability forum (at no expense to the data providers); and the release of DOCmorph, a more robust version of DIFmorph to translate many 'standards' multi-directionally. Issues and actions will also be addressed.

Olsen, Lola M.↗

New Ways of Facilitating Improved Data Discovery and Access for NASA's Suborbital Earth Science Observations

NASA conducts field research in various Earth Science disciplines utilizing airborne and other non-satellite platforms to acquire in situ and remotely sensed observations indicative of physical processes across a range of scales. Field efforts are key in the development and validation of instruments and satellite algorithm refinements. The heterogeneous data, with a range of file formats, scales, and acquisition methods, support research in several science areas. NASA’s archive process assigns data products to discipline-oriented Distributed Active Archive Centers (DAACs) for stewardship. Over time, individual DAACs have developed tools for data browsing and serving disparate user bases. As science becomes more interdisciplinary, researchers need to incorporate observations from multiple campaigns, and multiple DAACs, into their work. Motivated in part by this shifting paradigm of needs, the Catalog of Archived Suborbital Earth Science Investigations (CASEI) was created. CASEI provides a single starting point to browse, search, and discover airborne and field data. Contextual metadata are organized and inter-linked allowing intuitive, integrated exploration across all NASA DAACs. Campaign science objectives, platform and instrument configurations, geographical details, geophysical concepts, and more are tracked in CASEI’s database, facilitating multi-parameter search, browse, and discovery of relevant data products. Researchers are able to directly access associated data products, via DOI links, regardless of the DAAC where they reside. Significant events, key time periods of high science interest within the longer-duration campaign effort, are also indicated and allow for a more efficient identification of critical data subsets. This presentation describes CASEI’s development, intensive metadata curation process, and demonstrates the web interface experience. Initial content metrics and plans for continued maintenance will also be discussed.

metadata↗

Opening Historical Airborne Data to Present Day Researchers

For more than 50 years, NASA has flown airborne sensors to carry out research, validate satellite sensors, and test new instrument capabilities. Data collected prior to 2000 are typically analog and difficult to locate and use. The Airborne Data Management Group (ADMG) facilitates rescue of these valuable data to ensure easier discovery, access, and use. But opening historical data comes at a cost of both time and money. Careful decisions are required in assessing the return on investment. - Is there interest in the science community? - Are there government data requirements? - What is the temporal / spatial value of the data? - Can data be transformed to a digital format? - What is cost of transformation? - What time period is needed for rescue? Converting the data to today’s digital storage standards increases value and provides data access. The addition of metadata makes the data easier to search for.

Deborah Smith↗

SBUV version 8.6 Retrieval Algorithm: Error Analysis and Validation Technique

SBUV version 8.6 algorithm was used to reprocess data from the Back Scattered Ultra Violet (BUV), the Solar Back Scattered Ultra Violet (SBUV) and a number of SBUV/2 instruments, which 'span a 41-year period from 1970 to 2011 (except a 5-year gap in the 1970s)[see Bhartia et al, 2012]. In the new version Daumont et al. [1992] ozone cross section were used, and new ozone [McPeters et ai, 2007] and cloud climatologies Doiner and Bhartia, 1995] were implemented. The algorithm uses the Optimum Estimation technique [Rodgers, 2000] to retrieve ozone profiles as ozone layer (partial column, DU) on 21 pressure layers. The corresponding total ozone values are calculated by summing ozone columns at individual layers. The algorithm is optimized to accurately retrieve monthly zonal mean (mzm) profiles rather than an individual profile, since it uses monthly zonal mean ozone climatology as the A Priori. Thus, the SBUV version 8.6 ozone dataset is better suited for long-term trend analysis and monitoring ozone changes rather than for studying short-term ozone variability. Here we discuss some characteristics of the SBUV algorithm and sources of error in the SBUV profile and total ozone retrievals. For the first time the Averaging Kernels, smoothing errors and weighting functions (or Jacobians) are included in the SBUV metadata. The Averaging Kernels (AK) represent the sensitivity of the retrieved profile to the true state and contain valuable information about the retrieval algorithm, such as Vertical Resolution, Degrees of Freedom for Signals (DFS) and Retrieval Efficiency [Rodgers, 2000]. Analysis of AK for mzm ozone profiles shows that the total number of DFS for ozone profiles varies from 4.4 to 5.5 out of 6-9 wavelengths used for retrieval. The number of wavelengths in turn depends on solar zenith angles. Between 25 and 0.5 hPa, where SBUV vertical resolution is the highest, DFS for individual layers are about 0.5.

Kramarova, N. A.↗

Comprehensive Assessment of Models and Events Using Library Tools (CAMEL) Framework: Time Series Comparisons

The Comprehensive Assessment of Models and Events using Library Tools (CAMEL) framework leverages existing Community Coordinated Modeling Center services: Run on Request post processing tools that generate model time series outputs and the new Community Coordinated Modeling Center Metadata Registry that describes simulation runs using Space Physics Archive Search and Extract metadata. The new CAMEL visualization tool compares the modeled time series with observational data and computes a suite of skill scores such as Prediction Efficiency, Root Mean Square Error, and Symmetric Signed Percentage Bias. Model data pairs used for skill calculations are obtained considering a user selected maximum difference between the time of observation and the nearest model output. The system renders available data for all locations and time periods selected using interactive visualizations that allow the user to zoom, pan, and pick data values along traces. Skill scores are reported for each selected event or aggregated over all events for all participating model runs. Separately, scores are reported for all locations (satellites or stations) and for each location individually. We are building on past experiences with model data comparisons of magnetosphere and ionosphere model outputs from GEM2008, GEMCEDAR Electrodynamics Thermosphere Ionosphere, and the SWPC Operational Space Weather Model challenges. The CAMEL visualization tool is demonstrated using three validation studies: (a) Wang Sheeley Arge heliosphere simulations compared against OMNI solar wind data, (b) ground magnetic perturbations from several magnetosphere and ionosphere electrodynamics models as observed by magnetometers, and (c) electron fluxes from several ring current simulations compared to Radiation Belt Storm Probes Helium Oxygen Proton Electron instrument measurements, integrated over different energy ranges.

Rastätter, Lutz↗

NASA GeneLab Multi-study Visualization Portal

NASA GeneLab has helped advance the field of Space Biology by providing a public repository where researchers can store, share, analyze and visualize the results of space flight related omics experiments. The GeneLab data visualization portal allows any user, regardless of bioinformatics knowledge or access to computational resources, to interact with the experimental data, draw their own conclusions, and gain insights about the effects of space on living systems. These tools help democratize scientific research and foster the NASA Open Science initiative. The new multi-study feature of the GeneLab visualization platform allows users to mine study metadata from RNA sequencing (RNA-seq) experiments to identify samples of interest by filtering datasets based on organism, tissue, assay technology type, and/or factor. Once samples are selected from multiple datasets, users can combine and normalize the sample data, then utilize the visualization displays, including Principal Component Analysis (PCA) plots, to assess sample distributions. Finally, users can perform differential gene expression analysis on the combined data and visualize the results through PCA plots, Volcano plots, Pair plots, Heatmap, Ideogram and Gene Set Enrichment Analysis. All user-generated results and visualizations will be available for download. Here, we present a biological study using samples from multiple GeneLab RNA-seq datasets and analyzed using the multi-study visualization platform to demonstrate inter- and intra-study variability, as well as commonly differentially expressed genes between spaceflight and ground control conditions across datasets. This new feature opens a wide range of possibilities and opportunities for further development including combining other assay technology types and integration with batch effect correction techniques and machine learning applications. Overall, this tool allows users to increase the statistical power of individual experiments, validate hypothesis, identify patterns, and opens the door to new and exciting research.

space biology↗

A Compilation of Global Bio-Optical in Situ Data for Ocean Colour Satellite Applications – Version Three

A global in situ data set for validation of ocean colour products from the ESA Ocean Colour Climate Change Initiative (OC-CCI) is presented. This version of the compilation, starting in 1997, now extends to 2021, which is important for the validation of the most recent satellite optical sensors such as Sentinel 3B OLCI and NOAA-20 VIIRS. The data set comprises in situ observations of the following variables: spectral remote-sensing reflectance, concentration of chlorophyll-a, spectral inherent optical properties, spectral diffuse attenuation coefficient, and total suspended matter. Data were obtained from multi-project archives acquired via open internet services or from individual projects acquired directly from data providers. Methodologies were implemented for homogenization, quality control, and merging of all data. Minimal changes were made on the original data, other than conversion to a standard format, elimination of some points, after quality control and averaging of observations that were close in time and space. The result is a merged table available in text format. Overall, the size of the data set grew with 148 432 rows, with each row representing a unique station in space and time (cf. 136 250 rows in previous version; Valente et al., 2019). Observations of remote-sensing reflectance increased to 68 641 (cf. 59 781 in previous version; Valente et al., 2019). There was also a near tenfold increase in chlorophyll data since 2016. Metadata of each in situ measurement (original source, cruise or experiment, principal investigator) are included in the final table. By making the metadata available, provenance is better documented and it is also possible to analyse each set of data separately.

ocean color↗

Framework for Processing Citizens Science Data for Applications to NASA Earth Science Missions

Citizen science (or crowdsourcing) has drawn much high-level recent and ongoing interest and support. It is poised to be applied, beyond the by-now fairly familiar use of, e.g., Twitter for natural hazards monitoring, to science research, such as augmenting the validation of NASA earth science mission data. This interest and support is seen in the 2014 National Plan for Civil Earth Observations, the 2015 White House forum on citizen science and crowdsourcing, the ongoing Senate Bill 2013 (Crowdsourcing and Citizen Science Act of 2015), the recent (August 2016) Open Geospatial Consortium (OGC) call for public participation in its newly-established Citizen Science Domain Working Group, and NASA's initiation of a new Citizen Science for Earth Systems Program (along with its first citizen science-focused solicitation for proposals). Over the past several years, we have been exploring the feasibility of extracting from the Twitter data stream useful information for application to NASA precipitation research, with both "passive" and "active" participation by the twitterers. The Twitter database, which recently passed its tenth anniversary, is potentially a rich source of real-time and historical global information for science applications. The time-varying set of "precipitation" tweets can be thought of as an organic network of rain gauges, potentially providing a widespread view of precipitation occurrence. The validation of satellite precipitation estimates is challenging, because many regions lack data or access to data, especially outside of the U.S. and in remote and developing areas. Mining the Twitter stream could augment these validation programs and, potentially, help tune existing algorithms. Our ongoing work, though exploratory, has resulted in key components for processing and managing tweets, including the capabilities to filter the Twitter stream in real time, to extract location information, to filter for exact phrases, and to plot tweet distributions. The key step is to process the "precipitation" tweets to be compatible with satellite-retrieved precipitation data. These key components for processing and managing "precipitation" tweets (and additional ones to be developed) are not limited to precipitation, nor are they limited to the Twitter social medium. Indeed, to maximize the value of our work for NASA earth science programs, these components should be generalized and be part of an overall framework for processing citizen science data for science research. In this paper, we outline such a framework.

earth science satellite data↗

The SPASE Data Model for Heliophysics Data: Is it Working?

The Space Physics Archive Search and Extract (SPASE) Data Model was developed to provide a metadata standard for describing Heliophysics (Space and Solar Physics) data within that science discipline. The SPASE Data Model has matured over the many years of its creation and is presently represented by Version 2.2.1. Information about SPASE can be obtained from the website group.org. The Data Model defines terms and values as well as the relationships between them in order to describe the data resources in the Heliophysics data environment. This data environment is quite complex, consisting of Virtual Observatories, Resident Archives, Data Providers, Partnering Data Centers, Services, Final Archives, and a Deep Archive. SPASE is the metadata language standard intended to permeate the complexity and provide a common method of obtaining and understanding data. Is it working in this capacity? SPASE has been used to describe a wide range of data. Examples range from ground-based magnetometer data to interplanetary satellite measurements to space weather model results. Has it achieved the goal of making the data easier to find and use? To find data of interest it is necessary that all the data of importance be described using the SPASE Data Model. Within the part of the data community associated with NASA (supported through NASA funding) there are obligations to use SPASE and (0 describe the old and new data using the SPASE XML schema. Although this pan of the community is not near 100% compliance with the mandate, there is good progress being made and the goal should be reachable in the future. Outside of the NASA data community there is still work to be done to convince the international community that SPASE descriptions are w011h the cost of their generation. Some of these groups such as Cluster, HELlO, GAIA, NOAA/NGDe. CSSDP, VSTO, SuperMAG, and IUGONET have agreed to use SPASE. but there are still other groups of importance that need (0 be reached. It is also assumed that the terminology is sufficiently broad and the descriptions are sufficiently complete that researchers needing data of a specific type or from a specific period can find and acquire what they need. A valid SPASE description can be very brief or very thorough depending on the willingness of the author to spend the time necessary to make the description useful. There is evidence that users are finding what they need through the SPASE descriptions, and this standard is a big step forward in Heliophysics data location. Does SPASE make it easier to use the data once they are found,) Thorough descriptions of data using SPASE can describe the data down to the level of individual parameters and exactly how the data are organized and stored. Should the SPASE data descriptions be written in such a way that they can be automatically ingested and understood by software tools'? Heliophysics instruments are becoming morc versatile all the time and the complexity of the data makes it tedious and time consuming to write SPASE descriptions with this level of sophistication even with the improvement of the tools used to generate the descriptions. Is it better to just write human-readable descriptions of the data at the parameter level or to refer to references that provide this information? This is a debate that is presently taking place and software is being developed to test what is possible.

Thieman, James↗

Functional Flight Test Report for Positive Systems' ADAR System 5500 Sensor SN8 Linear

This report describes results of the functional flight test conducted with the Positive Systems' ADAR 5500 sensor system (serial number 8, linear configuration) near Winslow, Arizona on June 30 and July 1, 1999. The in-flight test is one component of the NASA Scientific Data Purchase (SDP) Validation and Verification (V&V) process. It allows to measure characteristics of the entire sensor system affected by both performance of the sensor during a flight and post-flight image processing. The following characteristics were analyzed: changes of dark digital numbers (DN's), radiometric linearity, signal-to-noise ratio (SNR), spatial resolution, and geolocation accuracy. The measured characteristics were compared with the image product specifications defined in the Positive Systems' SDP contract. Dependence of the dark DN's on several factors was analyzed, but no significant correlation was found. However, the observed changes in dark DN's were relatively small, which justifies usage of a constant value in the dark DN subtraction procedure during post-processing. Dependence of measured at-sensor, in-band radiance (in arbitrary units) on measured in-band ground reflectance is very well described by a linear function - The sensor fulfills the linearity requirement. Measured SNR values lower than the contract specifications, but accuracy of that test was possibly affected by non-uniformity of the employed gray-scale panels. The SNR values are generally sufficiently high for most applications. SNR can also be improved during standard flights by using longer exposure times. Full width at half maximum (FWHM) of an edge response derived line spread function was used as a measure of spatial resolution. FWHM was generally smaller than twice the ground sample distance (GSD), in agreement with the contract specifications. Accuracy of the geolocation information, which is provided for the particular images in a metadata file, was found to meet contract requirements as well.

Stanley, Tom↗

Capturing, Analyzing, Maintaining, and Disseminating Shape Memory Material Data Between Information Management Systems

With an increased demand on reducing the time, cost, and effort to develop new materials, Integrated Computational Materials Engineering (ICME) has received widespread attention in various engineering disciplines as a catalyst for significantly reducing experimental testing during the material design process. An ICME approach to design can enable ‘fit-for-purpose’ materials to be realized in engineering applications by incorporating well-understood process-property-performance relationships between the various length and time scales in a material’s structure, enabling material optimization. However, such an approach requires validated multiscale models at the various length scales for a material, which in turn requires a large amount of data, a robust means of storing the data, and the ability to link data to developed material models. The NASA Vision 2040 [1] has identified nine key elements to enabling ICME approaches in system level design, with one being “Data, Information, and Visualization”, thus outlining the importance of a robust information management system for ICME. As the relationship between microstructure, properties, and material performance become better understood and incorporated into multiscale models that can be leveraged in application design, the emergence of new materials with application-driven properties can be realized. One such new material class that has seen growing attention are shape memory materials (SMM), in which a material can transition between a deformed and undeformed state via a reversible phase transformation when subject to a thermal, mechanical, or magnetic load [2]. SMMs have been used widely in aerospace and biomedical industries, including applications such as actuators, low-shock mechanisms, medical staples, braces, and stents [3, 4]. These materials exhibit unique behavior due to their ability to transition between phases, and thus the mechanisms that enable this transition must be captured in a data information management system and incorporated into SMM material models. At NASA Glenn Research Center, the Shape Memory Materials Database (SMMD) Tool has been developed to capture the necessary information that governs SMM material behavior and provide users the ability to select and visualize various SMMs for a specific application [5]. The database contains point-wise data for published SMM materials, along with the pedigree metadata for traceability necessary for a robust information management system. The database is also capable of storing in-house test data performed at NASA GRC by interacting with the developed Shape Memory Alloy (SMA) Analytics tool to extract the necessary point-wise values and populate the database. Although the SMMD Tool offers its users a single, authoritative source for SMM material data that is critical for model development and material design, the full material pedigree of the in-house test data for SMMs is not currently captured and is out of the scope for the SMMD tool. In this work, the schema for capturing SMM test data within the larger NASA GRC ICME Schema [6, 7, 8, 9] will be developed and implemented for thermomechanical tests conducted at NASA GRC. The developed schema will not only store the relevant data needed for the SMMD tool, but also the material pedigree (i.e., production of the bulk material, bulk material analysis, sample cut-out diagrams, sample fabrication procedure, etc.), test pedigree (i.e., test equipment used, measurement systems used, raw test data), and analysis pedigree (i.e., how the data in the SMMD tool is calculated). Furthermore, a Python-based framework will be developed to seamlessly interact between the SMA Analytics and SMMD tools, which will write the full dataset and associated metadata to the GRC Information Management System before passing the required point-wise data to the SMMD tool. Data informatics is a key element of the NASA Vision 2040, which requires not only that data is stored and maintained throughout the material lifecycle, but that the data is also accessible and reusable such that material development efforts can be minimized. Therefore, for an ICME design approach to be realized, a centralized information management system that drives the ICME process must be able to communicate with other databases. The work that will be presented in this presentation will therefore not only demonstrate the ability of NASA GRC’s information management system to capture SMM data, but also its ability to interact with pre-existing tools specialized for such materials.

Data management↗

Provenance in Data Interoperability for Multi-Sensor Intercomparison

As our inventory of Earth science data sets grows, the ability to compare, merge and fuse multiple datasets grows in importance. This requires a deeper data interoperability than we have now. Efforts such as Open Geospatial Consortium and OPeNDAP (Open-source Project for a Network Data Access Protocol) have broken down format barriers to interoperability; the next challenge is the semantic aspects of the data. Consider the issues when satellite data are merged, cross-calibrated, validated, inter-compared and fused. We must match up data sets that are related, yet different in significant ways: the phenomenon being measured, measurement technique, location in space-time or quality of the measurements. If subtle distinctions between similar measurements are not clear to the user, results can be meaningless or lead to an incorrect interpretation of the data. Most of these distinctions trace to how the data came to be: sensors, processing and quality assessment. For example, monthly averages of satellite-based aerosol measurements often show significant discrepancies, which might be due to differences in spatio- temporal aggregation, sampling issues, sensor biases, algorithm differences or calibration issues. Provenance information must be captured in a semantic framework that allows data inter-use tools to incorporate it and aid in the intervention of comparison or merged products. Semantic web technology allows us to encode our knowledge of measurement characteristics, phenomena measured, space-time representation, and data quality attributes in a well-structured, machine-readable ontology and rulesets. An analysis tool can use this knowledge to show users the provenance-related distrintions between two variables, advising on options for further data processing and analysis. An additional problem for workflows distributed across heterogeneous systems is retrieval and transport of provenance. Provenance may be either embedded within the data payload, or transmitted from server to client in an out-of-band mechanism. The out of band mechanism is more flexible in the richness of provenance information that can be accomodated, but it relies on a persistent framework and can be difficult for legacy clients to use. We are prototyping the embedded model, incorporating provenance within metadata objects in the data payload. Thus, it always remains with the data. The downside is a limit to the size of provenance metadata that we can include, an issue that will eventually need resolution to encompass the richness of provenance information required for daata intercomparison and merging.

Lynnes, Chris↗