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NASA NTRS2021

Diagnosing Seasonal to Multi-decadal Phytoplankton Group Dynamics in a Highly Productive Coastal Ecosystem

The Santa Barbara Channel, CA (SBC) is a biodiverse marine ecosystem fueled largely by phytoplankton productivity, and the composition of the phytoplankton community influences the magnitude and fates of this productivity. Here, we create a 22-year monthly time series of phytoplankton biomarker pigment concentrations in the SBC by combining 12 years of high performance liquid chromatography phytoplankton pigment concentrations with bio-optical models and 10 additional years of bio-optical observations. The bio-optical models skillfully predict biomarker pigment concentrations representative of five distinct phytoplankton groups (PGs; diatoms, dinoflagellates, chlorophytes, prymnesiophytes, and picophytoplankton) and resolve seasonal responses to the annual upwelling-relaxation cycle for all PGs except the dinoflagellates. Our observations indicate that nanophytoplankton groups respond most rapidly to seasonal upwelling, followed by diatoms, and then by picophytoplankton as the water column stratifies in the summer. A Regional Ocean Modeling System (ROMS) solution is used to relate advection of different source waters to the observed PG dynamics. The ROMS simulation results suggest that, on seasonal time scales, pronounced cross-SBC differences in PG seasonality are related to cross-SBC differences in source waters. El Niño Southern Oscillation events drive interannual variability in the upwelling response of most PGs. On decadal time scales, dinoflagellate blooms are associated with the warm phase of the North Pacific Gyre Oscillation and anomalous advection of Southern California Bight source waters into the SBC. Taken together, our results provide a novel view of phytoplankton community succession in response to seasonal upwelling by considering the dynamics of pico- and nano-phytoplankton and suggest that regional surface ocean advection plays a substantial role in driving phytoplankton composition in the SBC.

Phytoplankton↗

NASA NTRS2023

Remote Sensing of Dissolved Organic Carbon (DOC) Stocks, Fluxes and Transformations Along the Land-Ocean Aquatic Continuum: Advances, Challenges, and Opportunities

From stream headwaters to the deep ocean, dissolved organic carbon (DOC) is ubiquitous across the world’s aquatic systems, where it fulfills important biogeochemical and ecological functions. Importantly, DOC is a dynamic component of the carbon cycle and represents a global reservoir (mass of carbon) equivalent in size to the atmospheric CO 2 pool. The mobilization, transport, and transformations of DOC along the land-ocean aquatic continuum biogeochemically connect terrestrial landscapes, freshwater and marine ecosystems, and the atmosphere. As a result, DOC budgets are vulnerable to climate- and human-driven changes. Having the ability to quantify DOC stocks, fluxes, and transformations consistently and accurately in aquatic systems is therefore critical to our understanding of DOC’s functions in the environment and of their susceptibility to change. In recent years, optical techniques and synoptic earth observations have opened new doors to achieve this objective on a global scale. In this review, we explore how in situ measurements, earth observations, and the models they inform have facilitated the large-scale quantification of DOC stocks, fluxes, and transformations along the land-ocean aquatic continuum and how they have helped shape our current understanding of the global DOC cycle. The review also explores the limitations and challenges we still face today, and discusses how upcoming and future sensors are expected to provide new insights into our understanding of the global DOC cycle.

Dissolved organic carbon↗

NASA NTRS2017

Mapping Application for Penguin Populations and Projected Dynamics (MAPPPD): Data and Tools for Dynamic Management and Decision Support

The Mapping Application for Penguin Populations and Projected Dynamics (MAPPPD) is a web-based, open access, decision-support tool designed to assist scientists, non-governmental organizations and policy-makers working to meet the management objectives as set forth by the Commission for the Conservation of Antarctic Marine Living Resources (CCAMLR) and other components of the Antarctic Treaty System (ATS) (that is, Consultative Meetings and the ATS Committee on Environmental Protection). MAPPPD was designed specifically to complement existing efforts such as the CCAMLR Ecosystem Monitoring Program (CEMP) and the ATS site guidelines for visitors. The database underlying MAPPPD includes all publicly available (published and unpublished) count data on emperor, gentoo, Adelie) and chinstrap penguins in Antarctica. Penguin population models are used to assimilate available data into estimates of abundance for each site and year.Results are easily aggregated across multiple sites to obtain abundance estimates over any user-defined area of interest. A front end web interface located at www.penguinmap.com provides free and ready access to the most recent count and modelled data, and can act as a facilitator for data transfer between scientists and Antarctic stakeholders to help inform management decisions for the continent.

Humphries, G. R. W.↗

NASA NTRS1991

GLOBEC (Global Ocean Ecosystems Dynamics: Northwest Atlantic program

The specific objective of the meeting was to plan an experiment in the Northwestern Atlantic to study the marine ecosystem and its role, together with that of climate and physical dynamics, in determining fisheries recruitment. The underlying focus of the GLOBEC initiative is to understand the marine ecosystem as it related to marine living resources and to understand how fluctuation in these resources are driven by climate change and exploitation. In this sense the goal is a solid scientific program to provide basic information concerning major fisheries stocks and the environment that sustains them. The plan is to attempt to reach this understanding through a multidisciplinary program that brings to bear new techniques as disparate as numerical fluid dynamic models of ocean circulation, molecular biology and modern acoustic imaging. The effort will also make use of the massive historical data sets on fisheries and the state of the climate in a coordinated manner.

Source record↗

NASA NTRS2004

Rapid recovery from the Late Ordovician mass extinction

Understanding the evolutionary role of mass extinctions requires detailed knowledge of postextinction recoveries. However, most models of recovery hinge on a direct reading of the fossil record, and several recent studies have suggested that the fossil record is especially incomplete for recovery intervals immediately after mass extinctions. Here, we analyze a database of genus occurrences for the paleocontinent of Laurentia to determine the effects of regional processes on recovery and the effects of variations in preservation and sampling intensity on perceived diversity trends and taxonomic rates during the Late Ordovician mass extinction and Early Silurian recovery. After accounting for variation in sampling intensity, we find that marine benthic diversity in Laurentia recovered to preextinction levels within 5 million years, which is nearly 15 million years sooner than suggested by global compilations. The rapid turnover in Laurentia suggests that processes such as immigration may have been particularly important in the recovery of regional ecosystems from environmental perturbations. However, additional regional studies and a global analysis of the Late Ordovician mass extinction that accounts for variations in sampling intensity are necessary to confirm this pattern. Because the record of Phanerozoic mass extinctions and postextinction recoveries may be compromised by variations in preservation and sampling intensity, all should be reevaluated with sampling-standardized analyses if the evolutionary role of mass extinctions is to be fully understood.

Evolution↗

NASA NTRS1993

Did Mars once have martians?

Pictures of Mars from the Viking and Mariner 9 missions provide evidence of liquid water in Mars' past, indicating a warmer climate. It is speculated that outflow channels and valley networks were formed 3.5 to 4 billions years ago, at the same time life was developing on Earth. Current theories suggest that chemical reactions in Mars' early atmosphere depleted the original amounts of carbon dioxide with no mechanism to recycle it back into the atmosphere. Ecosystems in the cold, dry Antarctic valleys provide models of Mars on Earth and indicate that if life evolved on Mars there may be organic or fossil evidence under the surface. Lake beds on Mars surface are considered to be the best place to hunt for fossils.

NASA Center ARC↗

NASA NTRS2016

Automated Segmentation and Classification of Coral using Fluid Lensing from Unmanned Airborne Platforms

In recent years, there has been a growing interest among biologists in monitoring the short and long term health of the world's coral reefs. The environmental impact of climate change poses a growing threat to these biologically diverse and fragile ecosystems, prompting scientists to use remote sensing platforms and computer vision algorithms to analyze shallow marine systems. In this study, we present a novel method for performing coral segmentation and classification from aerial data collected from small unmanned aerial vehicles (sUAV). Our method uses Fluid Lensing algorithms to remove and exploit strong optical distortions created along the air-fluid boundary to produce cm-scale resolution imagery of the ocean floor at depths up to 5 meters. A 3D model of the reef is reconstructed using structure from motion (SFM) algorithms, and the associated depth information is combined with multidimensional maximum a posteriori (MAP) estimation to separate organic from inorganic material and classify coral morphologies in the Fluid-Lensed transects. In this study, MAP estimation is performed using a set of manually classified 100 x 100 pixel training images to determine the most probable coral classification within an interrogated region of interest. Aerial footage of a coral reef was captured off the coast of American Samoa and used to test our proposed method. 90 x 20 meter transects of the Samoan coastline undergo automated classification and are manually segmented by a marine biologist for comparison, leading to success rates as high as 85%. This method has broad applications for coastal remote sensing, and will provide marine biologists access to large swaths of high resolution, segmented coral imagery.

algorithms segments classifications↗

NASA NTRS2015

Automated Segmentation and Classification of Coral Using Fluid Lensing from Unmanned Airborne Platforms

In recent years, there has been a growing interest among biologists in monitoring the short and long term health of the worlds coral reefs. The environmental impact of climate change poses a growing threat to these biologically diverse and fragile ecosystems, prompting scientists to use remote sensing platforms and computer vision algorithms to analyze shallow marine systems. In this study, we present a novel method for performing coral segmentation and classification from aerial data collected from small unmanned aerial vehicles (sUAV). Our method uses Fluid Lensing algorithms to remove and exploit strong optical distortions created along the air-fluid boundary to produce cm-scale resolution imagery of the ocean floor at depths up to 5 meters. A 3D model of the reef is reconstructed using structure from motion (SFM) algorithms, and the associated depth information is combined with multidimensional maximum a posteriori (MAP) estimation to separate organic from inorganic material and classify coral morphologies in the Fluid-Lensed transects. In this study, MAP estimation is performed using a set of manually classified 100 x 100 pixel training images to determine the most probable coral classification within an interrogated region of interest. Aerial footage of a coral reef was captured off the coast of American Samoa and used to test our proposed method. 90 x 20 meter transects of the Samoan coastline undergo automated classification and are manually segmented by a marine biologist for comparison, leading to success rates as high as 85. This method has broad applications for coastal remote sensing, and will provide marine biologists access to large swaths of high resolution, segmented coral imagery.

algorithms segments classifications↗

NASA NTRS2008

Ocean Carbon and Biogeochemistry Scoping Workshop on Terrestrial and Coastal Carbon Fluxes in the Gulf of Mexico, St. Petersburg, FL

Despite their relatively small surface area, ocean margins may have a significant impact on global biogeochemical cycles and, potentially, the global air-sea fluxes of carbon dioxide. Margins are characterized by intense geochemical and biological processing of carbon and other elements and exchange large amounts of matter and energy with the open ocean. The area-specific rates of productivity, biogeochemical cycling, and organic/inorganic matter sequestration are high in coastal margins, with as much as half of the global integrated new production occurring over the continental shelves and slopes (Walsh, 1991; Doney and Hood, 2002; Jahnke, in press). However, the current lack of knowledge and understanding of biogeochemical processes occurring at the ocean margins has left them largely ignored in most of the previous global assessments of the oceanic carbon cycle (Doney and Hood, 2002). A major source of North American and global uncertainty is the Gulf of Mexico, a large semi-enclosed subtropical basin bordered by the United States, Mexico, and Cuba. Like many of the marginal oceans worldwide, the Gulf of Mexico remains largely unsampled and poorly characterized in terms of its air-sea exchange of carbon dioxide and other carbon fluxes. The goal of the workshop was to bring together researchers from multiple disciplines studying terrestrial, aquatic, and marine ecosystems to discuss the state of knowledge in carbon fluxes in the Gulf of Mexico, data gaps, and overarching questions in the Gulf of Mexico system. The discussions at the workshop were intended to stimulate integrated studies of marine and terrestrial biogeochemical cycles and associated ecosystems that will help to establish the role of the Gulf of Mexico in the carbon cycle and how it might evolve in the face of environmental change.

Air sea exchanges↗

NASA NTRS2017

Cross-Disciplinarity in the Advance of Antarctic Ecosystem Research

The biodiversity, ecosystem services and climate variability of the Antarctic continent, and the Southern Ocean are major components of the whole Earth system. Antarctic ecosystems are driven more strongly by the physical environment than many other marine and terrestrial ecosystems. As a consequence, to understand ecological functioning, cross-disciplinary studies are especially important in Antarctic research. The conceptual study presented here is based on a workshop initiated by the Research Programme Antarctic Thresholds - Ecosystem Resilience and Adaption of the Scientific Committee on Antarctic Research, which focused on challenges in identifying and applying cross-disciplinary approaches in the Antarctic. Novel ideas, and first steps in their implementation, were clustered into eight themes, ranging from scale problems, risk maps, organism and ecosystem responses to multiple environmental changes, to evolutionary processes. Scaling models and data across different spatial and temporal scales were identified as an overarching challenge. Approaches to bridge gaps in the research programmes included multi-disciplinary monitoring, linking biomolecular findings and simulated physical environments, as well as integrative ecological modelling. New strategies in academic education are proposed. The results of advanced cross-disciplinary approaches can contribute significantly to our knowledge of ecosystem functioning, the consequences of climate change, and to global assessments that ultimately benefit humankind.

Scaling↗

NASA NTRS2020

Learning instrument invariant characteristics for generating high-resolution global coral reef maps

Coral reefs are one of the most biologically complex and diverse ecosystems within the shallow marine environment. Unfortunately, these underwater ecosystems are threatened by a number of anthropogenic challenges, including ocean acidification and warming, overfishing, and the continued increase of marine debris in oceans. This requires a comprehensive assessment of the world's coastal environments, including a quantitative analysis on the health and extent of coral reefs and other associated marine species, as a vital Earth Science measurement. However, limitations in observational and technological capabilities inhibit global sustained imaging of the marine environment. Harmonizing multimodal data sets acquired using different remote sensing instruments presents additional challenges, thereby limiting the availability of good quality labeled data for analysis. In this work, we develop a deep learning model for extracting domain invariant features from multimodal remote sensing imagery and creating high-resolution global maps of coral reefs by combining various sources of imagery and limited hand-labeled data available for certain regions. This framework allows us to generate, for the first time, coral reef segmentation maps at 2-meter resolution, which is a significant improvement over the kilometer-scale state-of-the-art maps. Additionally, this framework doubles accuracy and IoU metrics over baselines that do not account for domain invariance.

Domain Adaptation↗

NASA NTRS2020

Hawai'i Water Resources: Utilizing NASA Earth Observations to Assess Ocean Conditions Leading to the Spread of the Nuisance Red Algae (Chondria tumulosa) in Papahānaumokuākea Marine National Monument, Hawai’i

Chondria tumulosa, a newly discovered red alga, was observed in low abundance in 2016 but has since proliferated and is now smothering and decimating vast expanse of coral reefs in Manawai, located in Papahānaumokuākea Marine National Monument (PMNM). If the spread persists, the outbreak of this cryptogenic species could potentially cause region-wide ecosystem degradation. In coordination with the U.S. Fish and Wildlife Service, Marine National Monuments of the Pacific and the National Oceanographic and Atmospheric Administration (NOAA) Office of National Marine Sanctuaries’ Papahānaumokuākea Marine National Monument, this project created a tool to analyze oceanographic conditions (sea surface temperature (SST), chlorophyll-a, water velocity, salinity, turbidity) across the Monument that could potentially be driving the algal spread. The Google Earth Engine tool enabled the partners to visualize oceanographic conditions and gather time-series graphs utilizing Aqua and Terra Moderate Resolution Imaging Spectroradiometer (MODIS), Suomi National Polar-orbiting Partnership (NPP) Visible Infrared Imaging Radiometer Suite (VIIRS), Sentinel-3 Ocean and Land Colour Instrument (OLCI), Hybrid Coordinate Ocean Model (HYCOM) and NOAA's Climate Data Record in a user-friendly interface. The team used in situ SST data from subsurface temperature recorders provided by the partners to validate the tool's accuracy. Preliminary statistical analysis of MODIS data found warming trends in SST in Manawai as well as increased chlorophyll-a levels during the summer months in contrast to the control (non-infected) Lalo atoll. The tool did not aim to classify algal presence due to limited availability of higher resolution satellite imagery but instead enabled PMNM managers to monitor conditions that may be conducive to algal growth around the monument to make informed decisions and mitigation practices.

DEVELOP Project Summary↗

NASA NTRSDate not supplied

TPSAS-NF1676L-33032-DND

The North Atlantic Aerosols and Marine Ecosystems Study (NAAMES; http://naames.larc.nasa.gov) is a five-year NASA Earth-Venture Suborbital-2 Mission to characterize the plankton ecosystems and their influences on remote marine aerosols, boundary layer clouds, and their implications for climate in the North Atlantic. While marine-sourced aerosols have been shown to make important contributions to surface aerosol loading, cloud condensation nuclei and ice nuclei concentrations over remote marine and coastal regions, it is still a challenge to differentiate the marine biogenic aerosol signal from the strong influence of continental pollution outflow. The objectives of this study are to determine the major transport pathways for North American pollution outflow to the North Atlantic, and to quantify the terrestrial and marine sources of aerosols during NAAMES using ground, ship, aircraft, and remote sensing observations in conjunction with a state-of-the-art global 3-D chemical transport model (GEOS-Chem). This poster presents an initial evaluation of GEOS-Chemfor the periods of NAAMES campaigns #1 (Nov. 2015) and #2 (May 2016).

Hongyu Liu↗

NASA NTRS1988

The derivation of sub-canopy surface terrain models of coastal forests using synthetic aperture radar

Radar data acquired by the Shuttle Imaging Radar-B mission covering a portion of the Mouths of the Ganges forests were used to create a terrain model for use in determining tidal flow and eventual nutrient transport from the forest to the marine habitat. Results show that good digital topographic terrain models of wet coastal forests can be generated using multiple sets of L-band SAR and ancillary tide elevation data. The dominance of the interaction phenomenon in the radar backscatter of flooded forests can be used to create sub-canopy inundation maps which when merged with tide surface data can be used to generate reasonable topographic models. Ideally models could be improved by using multiple sets of data at a constant incidence angle over the total tide range. The optimal angle for the SAR depends upon the characteristics of the forest. The range of 46 to 57 deg seems applicable to the 12.5 m tall closed canopy in this example. Such models can be an extremely valuable tool for studying and mapping the mangal ecosystem.

Imhoff, M. L.↗

NASA NTRS2019

Developing a Community of Practice for Applied Uses of Future PACE Data to Address Marine Food Security Challenges

External interaction:The Plankton, Aerosol, Cloud, ocean Ecosystem (PACE) mission will include a hyperspectral imaging radiometer to advance ecosystem monitoring beyond heritage retrievals of the concentration of surface chlorophyll and other traditional ocean color variables, offering potential for novel science and applications. PACE is the first NASA ocean color mission to occur under the agency's new and evolving effort to directly engage practical end users prior to satellite launch to increase adoption of this freely available data toward societal challenges. Here we describe early efforts to engage a community of practice around marine food-related resource management, business decisions, and policy analysis. Obviously one satellite cannot meet diverse end user needs at all scales and locations, but understanding downstream needs helps in the assessment of information gaps and planning how to optimize the unique strengths of PACE data in combination with the strengths of other satellite retrievals, in situ measurements, and models. Higher spectral resolution data from PACE can be fused with information from satellites with higher spatial or temporal resolution, plus other information, to enable identification and tracking of new marine biological indicators to guide sustainable management. Accounting for the needs of applied researchers as well as non-traditional users of satellite data early in the PACE mission process will ultimately serve to broaden the base of informed users and facilitate faster adoption of the most advanced science and technology toward the challenge of mitigating food insecurity.

Schollaert Uz, Stephanie↗

NASA NTRS2024

Southern California Water Resources: Using NASA Earth Observations to Monitor Seagrass Extent and Water Quality Parameters in Southern California

Eelgrass (Zostera marina) is a species of submerged aquatic vegetation found in shallow bays and estuaries with soft seafloors. Eelgrass is recognized for providing ecosystem benefits, such as carbon sequestration, sediment stabilization, water clarification, and fish and wildlife habitats. However, eelgrass is impacted by both marine and terrestrial threats associated with climate change. In this project, we worked with the Southern California Coastal Water Research Project, the National Oceanic and Atmospheric Administration’s National Marine Fisheries Service, and the State of California San Diego Regional Water Quality Control Board to investigate water quality parameters (i.e., chlorophyll-a concentration, sea surface temperature, and turbidity) associated with eelgrass in Newport Bay and Mission Bay, California. The team used Landsat 8 Operational Land Imager and Thermal Infrared Sensor, Landsat 9 Operational Land Imager-2 and Thermal Infrared Sensor-2, Sentinel-2 MultiSpectral Instrument, and ECOsystem Spaceborne Thermal Radiometer Experiment on Space Station land surface temperature and cloud mask to create a time series of these water quality parameters from 2019–2023. We found that the parameters followed cyclical, seasonal patterns with turbidity and sea surface temperature peaking in the summer. We did not find that the parameters had changed significantly over longer time periods. These results will be used in a model developed by the Southern California Coastal Water Research Project to assess eelgrass ecosystem health and predict ecosystem occupancy in the future.

Katya Beener↗

NASA NTRS2001

Observations of Ocean Primary Productivity Using MODIS

Measuring the magnitude and variability of oceanic net primary productivity (NPP) represents a key advancement toward our understanding of the dynamics of marine ecosystems and the role of the ocean in the global carbon cycle. MODIS observations make two new contributions in addition to continuing the bio-optical time series begun with Orbview-2's SeaWiFS sensor. First, MODIS provides weekly estimates of global ocean net primary productivity on weekly and annual time periods, and annual empirical estimates of carbon export production. Second, MODIS provides additional insight into the spatial and temporal variations in photosynthetic efficiency through the direct measurements of solar-stimulated chlorophyll fluorescence. The two different weekly productivity indexes (first developed by Behrenfeld & Falkowski and by Yoder, Ryan and Howard) are used to derive daily productivity as a function of chlorophyll biomass, incident daily surface irradiance, temperature, euphotic depth, and mixed layer depth. Comparisons between these two estimates using both SeaWiFS and MODIS data show significant model differences in spatial distribution after allowance for the different integration depths. Both estimates are strongly dependence on the accuracy of the chlorophyll determination. In addition, an empirical approach is taken on annual scales to estimate global NPP and export production. Estimates of solar stimulated fluorescence efficiency from chlorophyll have been shown to be inversely related to photosynthetic efficiency by Abbott and co-workers. MODIS provides the first global estimates of oceanic chlorophyll fluorescence, providing an important proof of concept. MODIS observations are revealing spatial patterns of fluorescence efficiency which show expected variations with phytoplankton photo-physiological parameters as measured during in-situ surveys. This has opened the way for research into utilizing this information to improve our understanding of oceanic NPP variability. Deriving the ocean bio-optical properties places severe demands on instrument performance (especially band to band precision) and atmospheric correction. Improvements in MODIS instrument characterization and calibration over the first 16 mission months have greatly improved the accuracy of the chlorophyll input fields and FLH, and therefore the estimates of NPP and fluorescence efficiency. Annual estimates now show the oceanic NPP accounts for 40-50% of the global total NPP, with significant interannual variations related to large scale ocean processes. Spatial variations in ocean NPP, and exported production, have significant effects on exchange of CO2 between the ocean and atmosphere. Further work is underway to improve both the primary productivity model functions, and to refine our understanding of the relationships between fluorescence efficiency and NPP estimates. We expect that the MODIS instruments will prove extremely useful in assessing the time dependencies of oceanic carbon uptake and effects of iron enrichment, within the global carbon cycle.

Esaias, Wayne E.↗

NASA NTRS2011

Pelagic Habitat Analysis Module (PHAM) for GIS Based Fisheries Decision Support

We have assembled a system that integrates satellite and model output with fisheries data We have developed tools that allow analysis of the interaction between species and key environmental variables Demonstrated the capacity to accurately map habitat of Thresher Sharks Alopias vulpinus & pelagicus. Their seasonal migration along the California Current is at least partly driven by the seasonal migration of sardine, key prey of the sharks.We have assembled a system that integrates satellite and model output with fisheries data We have developed tools that allow analysis of the interaction between species and key environmental variables Demonstrated the capacity to accurately map habitat of Thresher Sharks Alopias vulpinus nd pelagicus. Their seasonal migration along the California Current is at least partly driven by the seasonal migration of sardine, key prey of the sharks.

geographic information system (GIS)↗