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At least 55 records · Page 3

The method of imbedded Lagrangian element to estimate wave power absorption by some submerged devices

A simple approach is described to estimate the wave power absorption potential of submerged devices known to cause wave focusing and flow enhancement. In particular, the presence of a flow-through power take-off (PTO) system, such as low-head turbines, can be accounted for. The wave radiation characteristics of an appropriately selected Lagrangian element (LE) in the fluid domain are first determined. In the limit of a vanishing mass, the LE reduces to a patch of distributed normal dipoles. Here, the hydrodynamic coefficients of this virtual object are then input in a standard equation of motion where the effect of the PTO can be represented, for example, as a dashpot damping term. The process is illustrated for a class of devices recently proposed by Carter and Ertekin (2011), although in a simplified form. Favorable wave power absorption is shown for large ratios of the LE wave radiation coefficient over the LE added mass coefficient. Under optimal conditions, the relative flow reduction from the PTO theoretically lies between 0.50 and 1/√2≈ 0.71, with lower values corresponding to better configurations. Wave power capture widths, the sensitivity of results to PTO damping and sample spectral calculations at a typical site in Hawaiian waters are proposed to further illustrate the versatility of the method.

16 TIDAL AND WAVE POWER↗

Numerical modeling of heterogeneous asperity distributions controlling the growth of shear rupture on a frictional fault

Copyright 2016 ARMA, American Rock Mechanics Association. A better understanding of the strength distributions and the seismic response of asperities failing within a cohesive (or breakdown) region of the growing shear rupture is important in many engineering disciplines, such as, hydraulic fracture and induced seismicity. In the laboratory, a fault is experimentally modeled by a 400 mm × 80 mm × 12 mm PMMA slider sheared across a large PMMA base plate. A pressure-sensitive film was employed to localize and size, and measure normal stress upon contact junctions. Moments prior to rapid sliding, multiple discrete and localized dynamic events (or foreshocks) were observed at a section of the fault that exhibited a sparse to dense transition in asperity distribution. Experiments showed that foreshocks occurred as the crack (rupture front) moved into the resistive patch of densely distributed asperities. We use the results of pressure sensitive film asperity measurements to develop a heterogeneous finite element (FE) model that studies the effect of asperities within the cohesive region have on the expanding shear crack. Slip accumulated heterogeneously during the loading cycle due to the non-uniform distribution of asperities. We study the constitutive behavior of a frictional interface where local slip is determined by the asperities and their ability to communicate elastically. A foreshock (Mw -7.4) was simulated in a quasi-static manner by instantaneoulsy removing an asperity contact during the loading cycle. The foreshock increased shear stress perturbations to neighboring regions up to distances of ~ 10 to 15 source radii.

Selvadurai, PA↗

Structural and functional analysis of the interaction between the nucleoporin Nup98 and the mRNA export factor Rae1

The export of mRNAs is a multistep process, involving the packaging of mRNAs into messenger ribonucleoprotein particles (mRNPs), their transport through nuclear pore complexes, and mRNP remodeling events prior to translation. Ribonucleic acid export 1 (Rae1) and Nup98 are evolutionarily conserved mRNA export factors that are targeted by the vesicular stomatitis virus matrix protein to inhibit host cell nuclear export. Here, we present the crystal structure of human Rae1 in complex with the Gle2-binding sequence (GLEBS) of Nup98 at 1.65 {angstrom} resolution. Rae1 forms a seven-bladed {beta}-propeller with several extensive surface loops. The Nup98 GLEBS motif forms an {approx} 50-{angstrom}-long hairpin that binds with its C-terminal arm to an essentially invariant hydrophobic surface that extends over the entire top face of the Rae1 {beta}-propeller. The C-terminal arm of the GLEBS hairpin is necessary and sufficient for Rae1 binding, and we identify a tandem glutamate element in this arm as critical for complex formation. The Rae1 {center_dot} Nup98{sup GLEBS} surface features an additional conserved patch with a positive electrostatic potential, and we demonstrate that the complex possesses single-stranded RNA-binding capability. Together, these data suggest that the Rae1 {center_dot} Nup98 complex directly binds to the mRNP at several stages of the mRNA export pathway.

36 MATERIALS SCIENCE↗

Structural and Functional Analysis of the Interaction Between the Nucleoporin Nup98 and the mRNA Export Facto Rae1

The export of mRNAs is a multistep process, involving the packaging of mRNAs into messenger ribonucleoprotein particles (mRNPs), their transport through nuclear pore complexes, and mRNP remodeling events prior to translation. Ribonucleic acid export 1 (Rae1) and Nup98 are evolutionarily conserved mRNA export factors that are targeted by the vesicular stomatitis virus matrix protein to inhibit host cell nuclear export. Here, we present the crystal structure of human Rae1 in complex with the Gle2-binding sequence (GLEBS) of Nup98 at 1.65 {angstrom} resolution. Rae1 forms a seven-bladed {beta}-propeller with several extensive surface loops. The Nup98 GLEBS motif forms an {approx}50-{angstrom}-long hairpin that binds with its C-terminal arm to an essentially invariant hydrophobic surface that extends over the entire top face of the Rae1 {beta}-propeller. The C-terminal arm of the GLEBS hairpin is necessary and sufficient for Rae1 binding, and we identify a tandem glutamate element in this arm as critical for complex formation. The Rae1 {center_dot} Nup98{sup GLEBS} surface features an additional conserved patch with a positive electrostatic potential, and we demonstrate that the complex possesses single-stranded RNA-binding capability. Together, these data suggest that the Rae1 {center_dot} Nup98 complex directly binds to the mRNP at several stages of the mRNA export pathway.

59 BASIC BIOLOGICAL SCIENCES↗

NaroNet: Discovery of tumor microenvironment elements from highly multiplexed images

Understanding the spatial interactions between the elements of the tumor microenvironment -i.e. tumor cells. fibroblasts, immune cells- and how these interactions relate to the diagnosis or prognosis of a tumor is one of the goals of computational pathology. We present NaroNet, a deep learning framework that models the multi-scale tumor microenvironment from multiplex-stained cancer tissue images and provides patient-level interpretable predictions using a seamless end-to-end learning pipeline. Trained only with multiplex-stained tissue images and their corresponding patient-level clinical labels, NaroNet unsupervisedly learns which cell phenotypes, cell neighborhoods, and neighborhood interactions have the highest influence to predict the correct label. To this end, NaroNet incorporates several novel and state-of-the-art deep learning techniques, such as patch-level contrastive learning, multi-level graph embeddings, a novel max-sum pooling operation, or a metric that quantifies the relevance that each microenvironment element has in the individual predictions. We validate NaroNet using synthetic data simulating multiplex-immunostained images where a patient label is artificially associated to the -adjustable- probabilistic incidence of different microenvironment elements. We then apply our model to two sets of images of human cancer tissues: 336 seven-color multiplex-immunostained images from 12 high-grade endometrial cancer patients; and 382 35-plex mass cytometry images from 215 breast cancer patients. In both synthetic and real datasets, NaroNet provides outstanding predictions of relevant clinical information while associating those predictions to the presence of specific microenvironment elements.

60 APPLIED LIFE SCIENCES↗

Effects of Reoxidation of Liquid Steel and Slag Composition on the Chemistry Evolution of Inclusions During Electroslag Remelting

Electroslag remelting (ESR) is increasingly used to produce some varieties of special steels and alloys, mainly because of its ability to provide extreme cleanliness and an excellent solidification structure simultaneously. In the present study, the combined effects of varying SiO{sub 2} contents in slag and reoxidation of liquid steel on the chemistry evolution of inclusions and the alloying element content in steel during ESR were investigated. The inclusions in the steel before ESR refining were found to be oxysulfides of patch-type (Ca,Mn)S adhering to a CaO-Al{sub 2}O{sub 3}-SiO{sub 2}-MgO inclusion. The oxide inclusions in both the liquid metal pool and remelted ingots are CaO-Al{sub 2}O{sub 3}-MgO and MgAl{sub 2}O{sub 4} together with CaO-Al{sub 2}O{sub 3}-SiO{sub 2}-MgO inclusions (slightly less than 30 pct of the total inclusions), which were confirmed to originate from the reduction of SiO{sub 2} from the original oxide inclusions by dissolved Al in liquid steel during ESR. CaO-Al{sub 2}O{sub 3}-MgO and MgAl{sub 2}O{sub 4} are newly formed inclusions resulting from the reactions taking place inside liquid steel in the liquid metal pool caused by reoxidation of liquid steel during ESR. Increasing the SiO{sub 2} content in slag not only considerably reduced aluminum pickup in parallel with silicon loss during ESR, but also suppressed the decrease in SiO{sub 2} content in oxide inclusions. (Ca,Mn)S inclusions were fully removed before liquid metal droplets collected in the liquid metal pool.

36 MATERIALS SCIENCE↗

Oscillatory electrostatic potential on graphene induced by group IV element decoration

The structures and electronic properties of partial C, Si and Ge decorated graphene were investigated by first-principles calculations. The calculations show that the interaction between graphene and the decoration patches is weak and the semiconductor patches act as agents for weak electron doping without much disturbing graphene electronic π-bands. Redistribution of electrons due to the partial decoration causes the electrostatic potential lower in the decorated graphene areas, thus induced an electric field across the boundary between the decorated and non-decorated domains. Such an alternating electric field can change normal stochastic adatom diffusion to biased diffusion, leading to selective mass transport.

36 MATERIALS SCIENCE↗

An Asymptotically Compatible Coupling Formulation for Nonlocal Interface Problems with Jumps

Here, we introduce a mathematically rigorous formulation for a nonlocal interface problem with jumps and propose an asymptotically compatible finite element discretization for the weak form of the interface problem. After proving the well-posedness of the weak form, we demonstrate that solutions to the nonlocal interface problem converge to the corresponding local counterpart when the nonlocal data are appropriately prescribed. Several numerical tests in one and two dimensions show the applicability of our technique, its numerical convergence to exact nonlocal solutions, its convergence to the local limit when the horizons vanish, and its robustness with respect to the patch test.

97 MATHEMATICS AND COMPUTING↗

Evolution of Oxide–Sulfide Complex Inclusions and Its Correlation with Steel Cleanliness During Electroslag Rapid Remelting (ESRR) of Tool Steel

The evolution of CaO-Al{sub 2}O{sub 3}-MgO-(SiO{sub 2}) inclusions associated with CaS during electroslag rapid remelting (ESRR) of the tool steel with ultra low oxygen (8 ppm) under protective atmosphere was investigated. Thermodynamic calculation was performed to evaluate the oxygen level of liquid steel and the inclusion evolution during ESRR with the help of FactSage software (CON2 database). The results demonstrated that the reoxidation of liquid steel took place during industrial ESRR, resulting in the oxygen pickup of approximately double content. The oxygen level in the steel was determined by [Al]-[O] equilibrium during ESRR, whereas FeO in the slag transferred oxygen into the liquid steel, as indicated by the significant oxygen pickup. The inclusions in the steel electrode are oxide–sulfide type of CaO-Al{sub 2}O{sub 3}-MgO partially wrapped with CaS. The original oxide inclusions that had not been removed in ESRR process were transformed to liquid CaO-Al{sub 2}O{sub 3}-SiO{sub 2}-MgO inclusions through reacting with the dissolved oxygen supplied from the reoxidation of liquid steel and concerned elements in liquid steel during ESRR. These CaO-Al{sub 2}O{sub 3}-SiO{sub 2}-MgO inclusions were invariably associated with patch-type or shell-type CaS, which hold different formation mechanisms. The inclusions ranging from 2 to 4 µm take up a dominant proportion (a little more than 50 pct of the total inclusions) in the remelted ingots, and those larger than 8 µm account for about 3 pct. Melting rates of ESRR not only exerted a negligible effect on the steel cleanliness and the removal efficiency of oxide inclusions, but also on the inclusion size distribution.

36 MATERIALS SCIENCE↗

C‐Cracking of Brittle‐Material Spheres From Eccentric Hertzian Contact

Contact of brittle-material spheres can occur while they are manufactured, handled, or used in operation as roller elements or in deformably processed composite material. Statistically, the directional contact between two spheres will nearly always be oblique or eccentric in an unconfined and mobile sphere population. Although analyses of oblique contact exist, the portrayal of its maximum (tensile) first principal stress ( S 1 ) field is lacking. This information is needed for improved judgment of the prospect of crack initiation. Given these, the S 1 due to eccentric contact and subsequent crack initiation was analyzed using finite element analysis (FEA) and corroborative demonstration of c-crack creation. The FEA shows that an asymmetric S 1 field is created about the contact patch and is caused by superimposed shear intrinsic to eccentric contact. A crack will initiate if the maximum S 1 exceeds the material's tensile strength, and its field will cause the crack to propagate and arrest to form a C-shaped crack, or c-crack. C-crack initiation trends with lower applied forces, with greater amount of contact eccentricity, higher coefficient of friction, and smaller spherical radius. Finally, these metrics deserve recognition, especially when c-cracked brittle-material spheres are used in a system whose functionality or reliability is potentially compromised by the c-cracks.

Hertzian contact↗

Magnetic field calculation for a 10 MeV positron emission tomography cyclotron

The magnetic field calculation and correction for a 10 MeV positron emission tomography cyclotron is presented. 3D TOSCA analysis results are compared with the measured data, and the calculation error is used to calibrate the B-H curve to obtain a very precise finite element method estimator, which is used to predict the correction of the magnet pole for achieving the isochronous field. The isochronous field error is approximated with the effects of a set of standard patches. On the assumption that the effect of each small patch is proportional to its surface, the correction of the magnet pole is found by solving a system of equations using the least square scheme. The magnet shimming is performed and the measured magnetic field is found in good agreement with the prediction, with an error less than 2 G.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

A quantitative assessment of the model form error of friction models across different interface representations for jointed structures

Hysteretic models are widely used to model frictional interactions in joints to recreate experimental behavior. However, it is unclear which models are best suited for fitting or predicting the responses of structures. Here, the present study evaluates 26 friction model/interface representation combinations to quantify the model form error. A Quasi-Static Modal Analysis approach (termed Rayleigh Quotient Nonlinear Modal Analysis) is adopted to calculate the nonlinear system response, and a Multi-Objective Optimization is solved to fit experimental data of the first mode of the Brake-Reuß Beam. Optimized parameters from the first mode are applied to the second and third bending modes to quantify the predictive ability of the models. Formulations for both tracing full hysteresis loops and recreating hysteresis loops from a single loading curve (Masing assumptions) are considered. Smoothly varying models applied to a five patch representation showed the highest flexibility (for fitting mode 1) and good predictive potential (for modes 2 and 3). For a second formulation, which uses 152 frictional elements to represent the interface, the physically motivated spring in series with a Coulomb slip model (elastic dry friction) has high error for fitting mode 1 and performs near the middle for predicting higher modes. For both interface representation, the best fit models are not the most physical, but rather the ones with the most parameters (as expected); however, the more physical models perform somewhat better for predicting the higher modes.

42 ENGINEERING↗

Miniaturized Multi-Band Antenna via Element Collocation

Although much research has been performed on a driven element parasitically loaded by another element shorted to ground for dual frequency operation, the novel concept of two or more coplanar-driven elements in close proximity designed for multiple frequency operation has not been represented in the literature. Since each higher frequency antenna is built into the lower frequency elements, the largest element controls the structure’s total size. Furthermore, by using the self-resonant frequency inherent in reactive elements due to device packaging, the aperture of each antenna, due to a low insertion loss path at the frequency of the larger element, will include that of all smaller radiators. This configuration provides a large standing wave ratio at the shorter wavelengths via several series capacitive-inductive connections. Therefore, each antenna element provides the required surface area for the frequency of operation while being isolated from the larger radiators. For this study, a dual 2.45/5.8 GHz microstrip patch encompasses a small surface area of 9 square inches and provides circularly polarized electromagnetic radiation in excess of 6 dBi. This concept can be extrapolated to include additional radiators or may be scaled to other frequencies of interest.

42 ENGINEERING↗

An Adaptive Mesh Algorithm: Mesh Structure and Generation

The purpose of Adaptive Mesh Refinement is to minimize spatial errors over the computational space not to minimize the number of computational elements. The additional result of the technique is that it may reduce the number of computational elements needed to retain a given level of spatial accuracy. Adaptive mesh refinement is a computational technique used to dynamically select, over a region of space, a set of computational elements designed to minimize spatial error in the computational model of a physical process. The fundamental idea is to increase the mesh resolution in regions where the physical variables are represented by a broad spectrum of modes in k-space, hence increasing the effective global spectral coverage of those physical variables. In addition, the selection of the spatially distributed elements is done dynamically by cyclically adjusting the mesh to follow the spectral evolution of the system. Over the years three types of AMR schemes have evolved; block, patch and locally refined AMR. In block and patch AMR logical blocks of various grid sizes are overlaid to span the physical space of interest, whereas in locally refined AMR no logical blocks are employed but locally nested mesh levels are used to span the physical space. The distinction between block and patch AMR is that in block AMR the original blocks refine and coarsen entirely in time, whereas in patch AMR the patches change location and zone size with time. The type of AMR described herein is a locally refi ned AMR. In the algorithm described, at any point in physical space only one zone exists at whatever level of mesh that is appropriate for that physical location. The dynamic creation of a locally refi ned computational mesh is made practical by a judicious selection of mesh rules. With these rules the mesh is evolved via a mesh potential designed to concentrate the nest mesh in regions where the physics is modally dense, and coarsen zones in regions where the physics is modally sparse.

97 MATHEMATICS AND COMPUTING↗

THE MAGNETIC SYSTEMS TRIGGERING THE M6.6 CLASS SOLAR FLARE IN NOAA ACTIVE REGION 11158

We report a detailed event analysis of the M6.6 class flare in the active region (AR) NOAA 11158 on 2011 February 13. AR 11158, which consisted of two major emerging bipoles, showed prominent activity including one X- and several M-class flares. In order to investigate the magnetic structures related to the M6.6 event, particularly the formation process of a flare-triggering magnetic region, we analyzed multiple spacecraft observations and numerical results of a flare simulation. We observed that, in the center of this quadrupolar AR, a highly sheared polarity inversion line (PIL) was formed through proper motions of the major magnetic elements, which built a sheared coronal arcade lying over the PIL. The observations lend support to the interpretation that the target flare was triggered by a localized magnetic region that had an intrusive structure, namely, a positive polarity penetrating into a negative counterpart. The geometrical relationship between the sheared coronal arcade and the triggering region is consistent with the theoretical flare model based on the previous numerical study. We found that the formation of the trigger region was due to the continuous accumulation of small-scale magnetic patches. A few hours before the flare occurred, the series of emerged/advected patches reconnected with a pre-existing field. Finally, the abrupt flare eruption of the M6.6 event started around 17:30 UT. Our analysis suggests that in the process of triggering flare activity, all magnetic systems on multiple scales are included, not only the entire AR evolution but also the fine magnetic elements.

79 ASTRONOMY AND ASTROPHYSICS↗

Peridynamic Multiscale Finite Element Methods

The problem of computing quantum-accurate design-scale solutions to mechanics problems is rich with applications and serves as the background to modern multiscale science research. The prob- lem can be broken into component problems comprised of communicating across adjacent scales, which when strung together create a pipeline for information to travel from quantum scales to design scales. Traditionally, this involves connections between a) quantum electronic structure calculations and molecular dynamics and between b) molecular dynamics and local partial differ- ential equation models at the design scale. The second step, b), is particularly challenging since the appropriate scales of molecular dynamic and local partial differential equation models do not overlap. The peridynamic model for continuum mechanics provides an advantage in this endeavor, as the basic equations of peridynamics are valid at a wide range of scales limiting from the classical partial differential equation models valid at the design scale to the scale of molecular dynamics. In this work we focus on the development of multiscale finite element methods for the peridynamic model, in an effort to create a mathematically consistent channel for microscale information to travel from the upper limits of the molecular dynamics scale to the design scale. In particular, we first develop a Nonlocal Multiscale Finite Element Method which solves the peridynamic model at multiple scales to include microscale information at the coarse-scale. We then consider a method that solves a fine-scale peridynamic model to build element-support basis functions for a coarse- scale local partial differential equation model, called the Mixed Locality Multiscale Finite Element Method. Given decades of research and development into finite element codes for the local partial differential equation models of continuum mechanics there is a strong desire to couple local and nonlocal models to leverage the speed and state of the art of local models with the flexibility and accuracy of the nonlocal peridynamic model. In the mixed locality method this coupling occurs across scales, so that the nonlocal model can be used to communicate material heterogeneity at scales inappropriate to local partial differential equation models. Additionally, the computational burden of the weak form of the peridynamic model is reduced dramatically by only requiring that the model be solved on local patches of the simulation domain which may be computed in parallel, taking advantage of the heterogeneous nature of next generation computing platforms. Addition- ally, we present a novel Galerkin framework, the 'Ambulant Galerkin Method', which represents a first step towards a unified mathematical analysis of local and nonlocal multiscale finite element methods, and whose future extension will allow the analysis of multiscale finite element methods that mix models across scales under certain assumptions of the consistency of those models.

42 ENGINEERING↗

Celestial geometry

Celestial holography expresses S-matrix elements as correlators in a CFT living on the night sky. Poincaré invariance imposes additional selection rules on the allowed positions of operators. As a consequence, n-point correlators are only supported on certain patches of the celestial sphere, depending on the labeling of each operator as incoming/outgoing. Here we initiate a study of the celestial geometry, examining the kinematic support of celestial amplitudes for different crossing channels. We give simple geometric rules for determining this support. For n ≥ 5, we can view these channels as tiling together to form a covering of the celestial sphere. Our analysis serves as a stepping off point to better understand the analyticity of celestial correlators and illuminate the connection between the 4D kinematic and 2D CFT notions of crossing symmetry.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗