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At least 55 records · Page 3

Discovery, characterization, and application of chromosomal integration sites for stable heterologous gene expression in Rhodotorula toruloides

Rhodotorula toruloides is a non-model, oleaginous yeast uniquely suited to produce acetyl-CoA-derived chemicals. However, the lack of well-characterized genomic integration sites has impeded the metabolic engineering of this organism. Here we report a set of computationally predicted and experimentally validated chromosomal integration sites in R. toruloides. We first implemented an in silico platform by integrating essential gene information and transcriptomic data to identify candidate sites that meet stringent criteria. We then conducted a full experimental characterization of these sites, assessing integration efficiency, gene expression levels, impact on cell growth, and long-term expression stability. Among the identified sites, 12 exhibited integration efficiencies of 50% or higher, making them sufficient for most metabolic engineering applications. Using selected high-efficiency sites, we achieved simultaneous double and triple integrations and efficiently integrated long functional pathways (up to 14.7 kb). Additionally, we developed a new inducible marker recycling system that allows multiple rounds of integration at our characterized sites. Here, we validated this system by performing five sequential rounds of GFP integration and three sequential rounds of MaFAR integration for fatty alcohol production, demonstrating, for the first time, precise gene copy number tuning in R. toruloides. These characterized integration sites should significantly advance metabolic engineering efforts and future genetic tool development in R. toruloides.

59 BASIC BIOLOGICAL SCIENCES↗

Data for Discovery, Characterization, and Application of Chromosomal Integration Sites for Stable Heterologous Gene Expression in Rhodotorula toruloides

Rhodotorula toruloides is a non-model, oleaginous yeast uniquely suited to produce acetyl-CoA-derived chemicals. However, the lack of well-characterized genomic integration sites has impeded the metabolic engineering of this organism. Here we report a set of computationally predicted and experimentally validated chromosomal integration sites in R. toruloides . We first implemented an in silico platform by integrating essential gene information and transcriptomic data to identify candidate sites that meet stringent criteria. We then conducted a full experimental characterization of these sites, assessing integration efficiency, gene expression levels, impact on cell growth, and long-term expression stability. Among the identified sites, 12 exhibited integration efficiencies of 50% or higher, making them sufficient for most metabolic engineering applications. Using selected high-efficiency sites, we achieved simultaneous double and triple integrations and efficiently integrated long functional pathways (up to 14.7 kb). Additionally, we developed a new inducible marker recycling system that allows multiple rounds of integration at our characterized sites. We validated this system by performing five sequential rounds of GFP integration and three sequential rounds of MaFAR integration for fatty alcohol production, demonstrating, for the first time, precise gene copy number tuning in R. toruloides . These characterized integration sites should significantly advance metabolic engineering efforts and future genetic tool development in R. toruloides .

Conversion↗

Choosing the Best Modeling Platform for Radiological Risk Assessment Models - 20468

Radiological risk assessments, in the form of performance or safety assessments, are often required under regulations or guidance for remediation of contaminated land, decommissioning of contaminated buildings or structures, and radioactive waste disposal. These risk assessments are usually supported by fate and transport models that address decay and ingrowth of radionuclides, as well as their movement through engineered systems and the natural environment. These models are often projected thousands, or more, years into the future, largely because the radioactive species change through decay and ingrowth, and hence the magnitude of the radioactive effect changes with time. There are many computer codes that are available to address this type of modeling. They range from addressing specific pathways or processes such as infiltration of water, groundwater, surface water, air, biota, diffusion and advection of water and gases, to those that try to couple all processes together to evaluate the impact of fate and transport through the entire system to places in space and time to which access is assumed. These different types of codes are sometimes separated with the monikers process-level and systems-level codes, although it is often not clear that this separation does justice to the capabilities of the many codes that are available to evaluate fate and transport of radionuclides. The focus of this paper is the latter group of modeling codes. Several systems level modeling codes exist and are used. There are differences between these codes in terms of utility, flexibility, complexity and cost. The purpose of this paper is to compare a few of these codes in the context of work currently being performed by the International Atomic Energy Agency (IAEA) Modeling and Data for Radiological Impact Assessments (MODARIA) II Working Group 1 (WG1). The MODARIA II WG1's main focus is how stakeholder engaged decision analysis can, or should, be applied to radiological contamination problems so that better, longstanding, sustainable, solutions are reached. However, the WG1 also recognizes the potential impact of the modeling tools that are chosen to address radiological risk, which is often a primary objective of decision making for radiological problems. Other objectives might also be important, such as constraining costs, obtaining financing, minimizing impact on ecosystems, saving cultural resources, saving jobs, farmland, environmental justice, etc., in a full decision analysis for a given radiological contamination problem, but none of these other objectives have the same types of complex modeling needs as minimize radiological dose. Consequently, a further focus of WG1 is to evaluate the potential impacts on decision making of the choice of fate and transport, and risk assessment, modeling codes that are used to support decision making. The WG1 will produce a report at the end of 2020 that will focus on an approach to effective decision making and stakeholder engagement. The report will also consider the role that performance assessment modeling should play in the decision-making process, including the impact of the choice of modeling tools or computer codes on risk-informed decision making. Several sites around the World have been made available by Member States for these model comparisons, and several modeling tools have been considered. However, the focus of this paper is on two of the sites, one in Belgium and one in Ukraine, and on three of the tools: NORMALYSA (NORM And Legacy Site Assessment); GoldSim{sup C}, and AMBER{sup C}. The final report from this working group will also cover other modeling tools, including RESRAD, and PC-Cream{sup R}. (authors)

12 MANAGEMENT OF RADIOACTIVE AND NON-RADIOACTIVE W↗

Colorado State University Extension Industrial Assessment Center

Since its inception in 1984, the Colorado State University Industrial Assessment Center has performed industrial assessments at more than 720 manufacturing facilities in Colorado, Montana, Nebraska, Nevada, New Mexico, North Dakota, South Dakota, Utah, and Wyoming. From 2017 to 2019 there was a funding gap and the IAC shutdown. In 2020 through DOE extension funding the University relaunched the IAC as an extension center in order to provide assessments to underserved areas. Under this award, the CSU Industrial Assessment Center (IAC) was rebuilt with the help of student employees and the director. The CSU team experienced difficulty as the program was in the process of being restarted right as the 2020 pandemic hit. Nonetheless, the CSU IAC was instrumental in providing energy assessments to manufacturers in Colorado and Wyoming during the period of performance of 09/2019 – 12/2022. The Department of Energy's Industrial Assessment Centers (IACs) provide a valuable service to small and medium-sized manufacturers seeking to optimize their operations. These university-based centers offer no-cost, on-site assessments conducted by engineering faculty and students, analyzing energy consumption, production processes, and waste streams. They utilize advanced data acquisition systems to record operational data, and then use the data to create assessment recommendations. These recommendations form the foundation of the comprehensive energy report. The comprehensive report delivers actionable recommendations for enhancing energy efficiency, reducing waste, and reducing greenhouse gas emissions and improving productivity, often identifying significant cost savings. Furthermore, IACs facilitate access to implementation grants, enabling the businesses to readily adopt these improvements. This program not only strengthens individual businesses but also contributes to national goals of training the next generation of energy experts, as well as increasing industrial competitiveness and reduced environmental impact.

32 ENERGY CONSERVATION, CONSUMPTION, AND UTILIZATI↗

An Overview of the Risk Assessment Information System

This technical memorandum (TM) presents an overview of the Risk Assessment Information System (RAIS), a collection of web-based tools designed to assist with the environmental risk assessment process. The objective of the RAIS is to be a single resource for the risk assessment process, providing guidance when planning and performing the steps: data assessment, exposure assessment, toxicity assessment, and risk characterization. The RAIS evolved as a result of the initial remediation efforts at various United States (U.S.) Department of Energy (DOE) facilities. The goal was to increase the efficiency and transparency of the human health and ecological assessments being performed by DOE’s Office of Environmental Management, Oak Ridge Operations (ORO) office by providing a repository for toxicity information, physicochemical data, risk assessment procedures, standardized risk calculation methods, and web-based tools. Since the initial launch in 1996, the RAIS has expanded its user base outside of the federal government and now has users from over 100 countries, universities, states, and local governments. What sets the RAIS apart from other risk assessment sites are the publicly available, searchable toxicity and physicochemical databases and the wide range of chemical and radionuclide risk calculation tools. The purpose of this TM is to present the RAIS tools in order of the website menus and explain how they fit in the risk assessment process. In addition, this TM describes differences between the chemical and radionuclide tools of the RAIS. Screening level equations, chronic daily intake equations, and default exposure factors used in the chemical and radionuclide calculators are included in the appendices of this TM. This TM is not intended to be a detailed guide to risk assessment or the RAIS tools. The tools on the RAIS can be used to comply with procedures from multiple agencies, including but not limited to DOE, U.S. Environmental Protection Agency (EPA), U.S. Department of Defense (DoD), and many state governments. Further information on the RAIS tools can be found in the user guides and tutorials available on the webpage.

38 RADIATION CHEMISTRY, RADIOCHEMISTRY, AND NUCLEA↗

Demography, dynamics and data: building confidence for simulating changes in the world's forests

Vegetation demographic models (VDMs) are advanced tools for simulating forest responses to climate and land-use changes, and are essential for projecting carbon cycling and large-scale forest management strategies. Despite their increasing incorporation into Earth System Models, VDMs differ in their demographic assumptions, with no prior quantitative comparison of their performance. We benchmarked nine VDMs against observational data from boreal, temperate and tropical sites, assessing their accuracy in predicting tree growth, carbon turnover, biomass stocks and size distributions. Models were simulated under consistent climate conditions with postdisturbance recovery monitored for at least 420 yr. Postdisturbance carbon recovery trajectories showed significant variability while remaining within observational ranges. Initial regrowth rates varied substantially (0.03-0.60, 0.18-0.70 and 0.35-1.10 kgCm-2 yr-1 for boreal, temperate and tropical sites, respectively), influenced by each model's initial forest state. Models captured mature forest carbon content but showed compensating effects between overestimated growth and underestimated mortality rates. This first multi-model benchmarking identifies growth and mortality rates as critical calibration targets and highlights the need to refine postdisturbance establishment conditions for model development. We outline specific benchmarking variables needed to improve predictions of forest responses to environmental change.

demographic vegetation model benchmarking↗

Coal Power Plant Reinvestment Visualization Tool

This tool, available at https://energycommunities.gov/coal-power-plant-reinvestment-visualization-tool/, serves as a public database and map for the purposes of enabling state and local economic development officials, project developers, and power plant owners to identify and pursue opportunities for plant and community reinvestment. The Coal Power Plant Reinvestment Visualization Tool focuses on coal power plants that have been closed or set-to-retire, alongside key infrastructure characteristics that are relevant for potential redevelopment reinvestment opportunities, including the opportunity to query these data based off pre-defined or user-set queries to identify opportunities for coal power facility reinvestment to support solar, wind, manufacturing, and nuclear. These Data for visualization and query include, but are not limited to: • Electric Transmission Lines • EPA Brownfield Sites (assessed with Federal funding) • Petroleum Terminals • Ports • Railroads • Others The tool will be updated periodically to provide relevant information to enable state and local economic development officials, project developers, and power plant owners to identify and pursue opportunities for economic revitalization and community reinvestment. Within this application data are focused on U.S. power plants with coal generation, where at least one on-site generator utilizes or utilized coal as a fuel source, including planned retirements through 2058 (EIA, 2024). Additional information on energy communities and revitalization opportunities can be accessed on the Interagency Working Group on Coal & Power Plant Communities & Economic Revitalization Energy Communities website (https://energycommunities.gov).

Closures↗

Designing monitoring networks for local earthquakes

Abstract Seismic networks are essential for monitoring local earthquakes in connection to industrial activities, including wastewater injection and CO2 sequestration. Because these networks are typically deployed for short periods of time at specific sites, it is beneficial to develop best practices for efficient and effective installation and monitoring. Such standards are available for regional earthquake and microseismic monitoring, but not readily available for local scale (tens of kilometer scale) monitoring. Once the region of interest has been determined, the key parameters for establishing a network are available monitoring station locations, site noise, and site utility. Networks should be designed based on the project monitoring goals for earthquake magnitude and density. Herein, a network was established at the Patterson and Hartland Oil Fields in western Kansas in association with a US Department of Energy CarbonSAFE carbon capture and sequestration research project. We employed observations from an analog local network, the Wellington Earthquake Monitoring Network in south-central Kansas, to assess site noise and estimate earthquake detection thresholds for the Patterson and Hartland fields. Noise from oil production facilities was evaluated, concluding that oil lease sites are suitable for monitoring small local earthquakes (M1-M3). The network was designed to have a magnitude of completeness of M1 while using station locations on existing field operator leases. Fifteen months of continuous network operation demonstrates reliable and efficient local earthquake monitoring and provides best practices recommendations for similar operations.

58 GEOSCIENCES↗

Clear Sky Tampa Bay: Project and Toolkit Overview - Resilience-Based Resources for Assessing Solar + Storage on Critical Facilities

The Clear Sky Tampa Bay Team, convened by the Tampa Bay Regional Planning Council (TBRPC) and composed of county and city partners, private and public sector stakeholders, solar energy experts, and academic partners, collaboratively developed a set of resources to support the expanded use of solar + storage in the context of community resilience in Florida. Key questions guiding the project included: (1) What types of buildings and systems provide the maximum resilience benefits? (2) Where within our communities should we prioritize future solar + storage analysis or investment to mitigate the impacts of disasters? (3) How might other societal variables be incorporated into a site assessment when considering solar + storage for resilience? (4) Can a standardized process be developed that leverages existing resources to assist local governments with solar + storage for resilience research and decision-making?

14 SOLAR ENERGY↗

Oklahoma State University – Industrial Assessment Center (Final Report)

Our first primary objective is to provide industrial assessments to clients in Oklahoma, Arkansas, Kansas, and north and northwest Texas, including the Texas Panhandle (about 10% of the state of Texas). This geographical region extends about 400 miles north and south and about 600 miles east and west. In addition, the partnership links two universities, Oklahoma State University (OSU) and Wichita State University (WSU) within our region together in a significant collaboration focused on improving our region’s industrial competitiveness. Our second primary objective is to produce competent, motivated energy engineers. Student training will be a combination of classroom work, individual mentoring, and on-the-job training. The focus will be on energy conservation technologies, in conjunction with increased productivity, the economics of the same, and client relationships including client recruiting, on-site assessment, reporting, and client-related communications. Finally, we will work to provide resources and expertise to complement the first two primary objectives. The effectiveness and efficiency of our IAC will be measured, internally, by four broad criteria: (1) client benefits, (2) student development and acceptance after graduation, (3) regional/national contribution to lowering energy use and reducing pollutants, and (4) compliance with DOE/FM requirements. Client-related benefits include client contacts, timeliness of assessments and reports, the value of recommendations provided, and the value of recommendations implemented. Student development includes many students trained and the level of training provided in energy, waste, and productivity-related technologies as well as teamwork and communication skills. The contribution to lower national energy use and waste production is a natural outcome of the program. Compliance with DOE/FM requirements includes timeliness of reports, participation in Best Practices activities, contributions to EERE goals and objectives, and other requirements as communicated to the IAC.

32 ENERGY CONSERVATION, CONSUMPTION, AND UTILIZATI↗

Where to cool off: a geospatial framework for placement of cooling centers

Indoor cooling is essential to reduce heat stress and increase passive survivability during heatwaves. Although air conditioning (AC) is recommended for maintaining indoor thermal comfort, low- and medium-income households in the U.S. often do not own an AC and/or limit AC usage to reduce energy consumption and associated costs, thereby risking their health and safety. With the frequency and intensity of heatwaves increasing, cooling centers are considered an appropriate alternative to indoor cooling and a possible mitigation strategy to prevent adverse health impacts of heat exposure. However, these centers are limited in numbers and not always accessible. This requires (i) developing a geospatial framework using physical and social factors for optimal siting of cooling centers to meet future needs and (ii) ranking of existing and potential cooling centers (schools, libraries, religious institutions) based on their accessibility among vulnerable populations and proximity to healthcare facilities. We developed and deployed a geospatial framework based on the Multi-criteria Decision Analysis approach in five U.S. cities (Los Angeles (LA), Phoenix, Austin, Atlanta, Miami) to evaluate the effectiveness of the framework in ranking cooling centers based on accessibility and population coverage. The results revealed that (i) access to cooling centers varies across cities and 32.2–50.7% of centers are within walking distance of the most vulnerable populations, (ii) vulnerable populations exposed to Urban Heat Island (UHI) effects are more likely to experience energy burden, and (iii) about 21.2–49.4% of population with high energy burden have access to these centers. Considering that more cooling centers are needed to assist energy burdened households alleviate heat exposure impacts, the framework developed herein could be adapted to incorporate other factors (e.g. health impacts, policies) to assess site suitability of existing shelters, identify potential sites for new cooling centers, and geo-target communities where energy efficient emerging technologies could be deployed to reduce heat stress.

58 GEOSCIENCES↗

A practical method for modeling temporally-averaged ocean wave frequency-directional spectra for characterizing wave energy climates

Wave energy resource characterization investigations have been hindered because frequency-directional wave spectra are not broadly available for many coastal regions due to the insufficient spatial coverage of buoy observation networks and spectral wave model hindcast outputs. We address this problem by developing and validating a practical method for approximating temporally-averaged frequency-directional wave spectra averaged over periods of months or years from bulk wave parameters, which are available at a much greater coverage and resolution than frequency-directional wave spectra. While the temporally averaged frequency-directional wave spectrum over these periods cannot be used for analyzing a single sea state, it aggregates multiple sea states, identifies dominant wave energy systems representing wave climate, and resolves their spectral characteristics. Therefore, modelling temporally averaged frequency-directional wave spectra is of great value for planning and designing wave energy projects, e.g., resource characterization, site assessment, and conceptual design of wave energy converters. Temporally-averaged frequency-directional wave spectra and related important wave energy parameters approximated using this method are found to be more accurate than commonly used parametric wave spectrum models. This method can be applied to a wide range of wave climates given its universality and high accuracy. Also, the availability of bulk wave parameters from multi-decade high-resolution wave model hindcasts is increasing.

16 TIDAL AND WAVE POWER↗

A comparison of the power potential for surface- and seabed-deployed tidal turbines in the San Juan Archipelago, Salish Sea, WA

The San Juan archipelago lies along the axis of tidal movement between Straits of Juan de Fuca and Strait of Georgia in the Salish Sea. The amplitude of the tidal exchange produces significant tidal currents between the islands, as well as in Rosario and Haro Straits. These are of interest as a future source of electrical power generation, given the islands’ dependence on electricity supply by a subsea cable from the mainland. Here, we evaluate the tidal current energy potential in this region through a re-analysis of measurements collected by the National Ocean Service (NOS) and a high-resolution numerical model. Given the considerable variations in water depth and vertical velocity profiles across candidate tidal energy sites, we consider the trade-offs between tidal turbines deployed from a floating platform and those anchored to the seabed. Measurement re-analysis indicates several locations that could support tidal current power generation by MW-scale turbines with an acceptable balance between turbine size, rated power, and capacity factor. Even for relatively large (30 m) turbine diameters, surface-deployed turbines would be expected to produce up to 30 % more electricity than the same turbine deployed near the seabed due to vertical shear, with this difference increasing for smaller diameter turbines. A benchmark comparison at the measurement locations with the highest power generation potential shows relatively good model fidelity, though, even with relatively high resolution, time-average power density disagreements of ± 50 % persist throughout the water column. Nonetheless, the simulation identifies several locations with power generation potential more than twice as high as locations in the measurement re-analysis. These sites were either not surveyed by NOS or excluded due to data quality issues. Altogether, these results demonstrate the complimentary of models and measurements for tidal energy site assessment and suggest that tidal currents could be an important source of electricity generation in the San Juan archipelago.

16 TIDAL AND WAVE POWER↗

Legacy Site 377 (Former Building 377) Soil Sampling and Analysis Plan Addendum 1 (April 2023)

The purpose of this addendum is to address data gaps identified in the Legacy Site 377 (Former Building 377) Soil Sampling and Analysis Plan (SAP) (LLNL-AM-826971) (LLNL 2021a) and the Phase II Site Assessment Report for Legacy Slab 377 (LLNL-TM-828194) (LLNL 2021b). This addendum will be used in conjunction with the 2021 SAP. All policies and procedures set forth in the SAP that are not modified in this addendum will remain in effect for the duration of the project, where applicable.

54 ENVIRONMENTAL SCIENCES↗

Federal Aviation Administration Vertiport Electrical Infrastructure Study

In this detailed analysis, the authors assess the charging infrastructure needed for the deployment of advanced air mobility involving electrified vertical take-off and landing technologies. The report covers four research areas: (1) Identifying charging infrastructure requirements for existing facilities based on flight operational parameters, potential use cases, charging strategy, and other constraints. (2) Assessing sites on power availability to meet charging demand, the impact on grid infrastructure, potential hazards, and cybersecurity needs, and using technoeconomic analysis to identify opportunities for onsite distributed energy resources, primarily solar photovoltaics and battery energy storage systems. (3) Calculating greenhouse gas emission based on total energy consumption attributable to each site. (4) Analyzing the job and economic development impact for sites adopting new infrastructure.

29 ENERGY PLANNING, POLICY, AND ECONOMY↗

Session 3: Agrivoltaics Pathways [Slides]

This presentation was developed for a webinar series for the USAID's South Asia Group for Energy (SAGE) and South Asia Regional Energy Partnership (SAREP). The presentation includes insights into agrivoltaic site assessment planning, including what is needed for a farm assessment, solar panel system design from the agricultural perspective, variables that go into crop selection, and environmental impact, sustainability, and agritourism, technical parameters for developing an agrivoltaics project, including what makes up a PV feasibility study, understanding variables that go into technology and equipment selection, agrivoltaic installation and agricultural integration, and monitoring and maintenance throughout the life of the project, and agrivoltaic financial planning, risk mitigation, and debt equity issues.

14 SOLAR ENERGY↗