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At least 55 records · Page 3

Revealing the atomic and electronic mechanism of human manganese superoxide dismutase product inhibition

Human manganese superoxide dismutase (MnSOD) is a crucial oxidoreductase that maintains the vitality of mitochondria by converting superoxide (O 2 •– ) to molecular oxygen (O 2 ) and hydrogen peroxide (H 2 O 2 ) with proton-coupled electron transfers (PCETs). Human MnSOD has evolved to be highly product inhibited to limit the formation of H 2 O 2 , a freely diffusible oxidant and signaling molecule. The product-inhibited complex is thought to be composed of a peroxide (O 2 2– ) or hydroperoxide (HO 2 – ) species bound to Mn ion and formed from an unknown PCET mechanism. PCET mechanisms of proteins are typically not known due to difficulties in detecting the protonation states of specific residues that coincide with the electronic state of the redox center. To shed light on the mechanism, we combine neutron diffraction and X-ray absorption spectroscopy of the product-bound, trivalent, and divalent states of the enzyme to reveal the positions of all the atoms, including hydrogen, and the electronic configuration of the metal ion. The data identifies the product-inhibited complex, and a PCET mechanism of inhibition is constructed.

59 BASIC BIOLOGICAL SCIENCES↗

Burning questions for a warming and changing world: 15 unknowns in plant abiotic stress

Abstract We present unresolved questions in plant abiotic stress biology as posed by 15 research groups with expertise spanning eco-physiology to cell and molecular biology. Common themes of these questions include the need to better understand how plants detect water availability, temperature, salinity, and rising carbon dioxide (CO2) levels; how environmental signals interface with endogenous signaling and development (e.g. circadian clock and flowering time); and how this integrated signaling controls downstream responses (e.g. stomatal regulation, proline metabolism, and growth versus defense balance). The plasma membrane comes up frequently as a site of key signaling and transport events (e.g. mechanosensing and lipid-derived signaling, aquaporins). Adaptation to water extremes and rising CO2 affects hydraulic architecture and transpiration, as well as root and shoot growth and morphology, in ways not fully understood. Environmental adaptation involves tradeoffs that limit ecological distribution and crop resilience in the face of changing and increasingly unpredictable environments. Exploration of plant diversity within and among species can help us know which of these tradeoffs represent fundamental limits and which ones can be circumvented by bringing new trait combinations together. Better defining what constitutes beneficial stress resistance in different contexts and making connections between genes and phenotypes, and between laboratory and field observations, are overarching challenges.

Biochemistry & Molecular Biology↗

Analysis of a Decision-Directed Receiver with Unknown Priors

A decision-directed receiver (DDR) uses previous outputs (decisions) to estimate unknown parameters and, on the basis of these estimates, modifies the detector structure for subsequent decisions. Although the DDR is less complex to instrument than other adaptive schemes, inherent in the decision-directed approach is the possibility of a runaway. This occurs when the detector commits a sequence of decision errors resulting in a degradation of parameter estimates, which, in turn, results in a further deterioration of detector performance. Because of the dependencies introduced by the learning process, runaway is difficult to analyze. In this paper, a DDR with unknown a priori probabilities is considered. The priors are estimated by the relative frequency of decisions of that event. For binary detection, it is shown that there is a positive probability of a runaway (the estimates converge to 1 or 0), which equals 1 if the signal-to-noise ratio is below a critical value. A tight bound on the probability of a runaway is obtained by approximating the learning process by a random walk with independent increments. The analysis demonstrates that a runaway is quite improbable even for moderate signal-to-noise ratios. The analysis is extended to multiple signals and to the situation where the estimates of the priors are updated continuously through exponential weighting rather than allowed to converge.

Davisson, Lee D.↗

High-Power Radar Sounders for the Investigation of Jupiter Icy Moons

The high power and high data rate capability made available by a Prometheus class spacecraft could significantly enhance our ability to probe the subsurface of the planets/moons and asteroid/comets. The main technology development driver for our radar is the proposed Jupiter Icy Moon Orbiter (or JIMO) mission due to its harsh radiation environment. We plan to develop a dual-band radar at 5 and 50 MHz in response to the two major science requirements identified by the JIMO Science Definition Team: studying the near subsurface (less than 2 km) at high resolution and detection of the ice/ocean interface for Europa (depth up to 30 km). The 50-MHz band is necessary to provide high spatial resolution (footprint and depth) as required by the JIMO mission science requirements as currently defined. Our preliminary assessment indicates that the 50-MHz system is not required to be as high-power as the 5-MHz system since it will be more limited by the surface clutter than the Jupiter or galactic background noise. The low frequency band (e.g. 5 MHz), which is the focus of this effort, would be necessary to mitigate the performance risks posed by the unknown subsurface structure both in terms of unknown attenuation due to volumetric scattering and also the detection of the interface through the attenuative transition region at the ice/ocean interface. Additionally, the 5-MHz band is less affected by the surface roughness that can cause loss of coherence and clutter noise. However, since the Signal-to-Noise-Ratio (SNR) of the 5-MHz radar band is reduced due to Jupiter noise when operating in the Jupiter side of the moon, it is necessary to increase the radiated power. Our challenge is to design a high-power HF radar that can hnction in Jupiter's high radiation environment, yet be able to fit into spacecraft resource constraints such as mass and thermal limits. Our effort to develop the JIMO radar sounder will rely on our team's experience with planetary radar sounder design gained during our participation in the MARSIS radar sounder implementation.

Safaeinili, A.↗

Charge coupled device integration-time coding for detection of images moving with unknown velocities

Existing techniques for the detection of a moving low light level image by a CCD array have required velocity synchronism between the image and the photogenerated charges. This was necessary to prevent blurring during the long duration of charge integration. A new detection scheme is described which causes the image to be convolved with a clock modulation signal as the photocharges are collected. The charge accumulating from each image point will now be spread over many photoelements due to the absence of velocity synchronism, but the output is not blurred in the usual sense. Instead the charge is distributed through the array in a controlled way so that the image can be reconstructed.

White, J. M.↗

Prospects for measuring the time variation of astrophysical neutrino sources at dark matter detectors

We study the prospects for measuring the time variation of solar and atmospheric neutrino fluxes at future large-scale xenon and argon dark matter detectors. For solar neutrinos, a yearly time variation arises from the eccentricity of Earth’s orbit and, for charged current interactions, from a smaller energy-dependent day-night variation due to flavor regeneration as neutrinos travel through Earth. For a 100-ton xenon detector running for ten years with a xenon-136 fraction of ≲ 0.1 % , in the electron recoil channel a time-variation amplitude of about 0.8% is detectable with a power of 90% and the level of significance of 10%. This is sufficient to detect time variation due to eccentricity, which has amplitude of ∼ 3 % . In the nuclear recoil channel, the detectable amplitude is about 10% under current detector resolution and efficiency conditions, and this generally reduces to about 1% for improved detector resolution and efficiency, the latter of which is sufficient to detect time variation due to eccentricity. Our analysis assumes both known and unknown periods. We provide scalings to determine the sensitivity to an arbitrary time-varying amplitude as a function of detector parameters. Identifying the time variation of the neutrino fluxes will be important for distinguishing neutrinos from dark matter signals and other detector-related backgrounds and extracting properties of neutrinos that can be uniquely studied in dark matter experiments. Published by the American Physical Society 2024

Zhuang, Yi (ORCID:0000000277138724)↗

Large-Scale Interlaboratory DI-FT-ICR MS Comparability Study Employing Various Systems

We report ultra-high resolution mass spectrometry (UHR-MS) coupled with direct infusion (DI) electrospray ionization offers a fast solution for accurate untargeted profiling. Fourier transform ion cyclotron resonance (FT-ICR) mass spectrometers have been shown to produce a wealth of insights into complex chemical systems because they enable unambiguous molecular formula assignment even if the vast majority of signals is of unknown identity. Inter-laboratory comparisons are required to apply this type of instrumentation in quality control (for food industry or pharmaceutics), large-scale environmental studies or clinical diagnostics. Extended comparisons employing different FT-ICR MS instruments with qualitative direct infusion analysis are scarce since the majority of detected compounds cannot be quantified. The extent to which observations can be reproduced by different laboratories remains unknown. We set up a preliminary study which encompassed a set of seventeen laboratories around the globe, diverse in instrumental characteristics and applications, to analyze the same sets of extracts from commercially available standard human blood plasma and Standard Reference Material (SRM) for blood plasma (SRM1950), which were delivered at different dilutions or spiked with different concentrations of pesticides. The aim of this study was to assess the extent to which the outputs of differently tuned FTICR mass spectrometers, with different technical specifications, are comparable for setting the frames of a future DI-FT-ICR MS ring trial. We concluded that a cluster of five laboratories, with diverse instrumental characteristics showed comparable and representative performance across all experiments, setting a reference to be used in a future ring trial on blood plasma.

47 OTHER INSTRUMENTATION↗

Searching for Dark Matter with Superconducting Qubits

Dark matter is an enduring mystery in our quest to understand the fundamental constituents of our universe. Low mass bosons, such the axion or hidden photon, are compelling dark matter candidates. We leverage their potential interactions with electromagnetic fields, whereby the dark matter (of unknown mass) on rare occasion converts into a single photon, to devise a method of detecting these candidates. Current dark matter searches operating at microwave frequencies use a resonant cavity to coherently accumulate the field sourced by the dark matter and a near standard quantum limited (SQL) linear amplifier to read out the cavity signal. To further increase sensitivity to the dark matter signal and enable future searches, sub-SQL detection techniques are required.In this thesis, I report the development of a novel microwave photon counting technique and a new exclusion limit on hidden photon dark matter. We operate a superconducting qubit to make repeated quantum non-demolition measurements of cavity photons and apply a hidden Markov model analysis to reduce the noise to 15.7 dB below the quantum limit, with overall detector performance limited by a residual background of real photons. With the present device, we perform a hidden photon search and constrain the kinetic mixing angle to less than 1.68 x 10-15 in a band around 6.011 GHz (24.86 micro-eV) with an integration time of 8.33 s. This demonstrated noise reduction technique enables future dark matter searches to be sped up by a factor of 1300. By coupling a qubit to an arbitrary quantum sensor, more general sub-SQL metrology is possible with the techniques presented in this work.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

On-Line, Gyro-Based, Mass-Property Identification for Thruster-Controlled Spacecraft Using Recursive Least Squares

Spacecraft control, state estimation, and fault-detection-and-isolation systems are affected by unknown v aerations in the vehicle mass properties. It is often difficult to accurately measure inertia terms on the ground, and mass properties can change on-orbit as fuel is expended, the configuration changes, or payloads are added or removed. Recursive least squares -based algorithms that use gyro signals to identify the center of mass and inverse inertia matrix are presented. They are applied in simulation to 3 thruster-controlled vehicles: the X-38 and Mini-AERCam under development at NASA-JSC, and the SAM, an air-bearing spacecraft simulator at the NASA-Ames Smart Systems Research Lab (SSRL).

Wilson, Edward↗

Deep Mapping of Small Solar System Bodies with Galactic Cosmic Ray Secondary Particle Showers

We will investigate the use of galactic cosmic ray (GCR) secondary particles to probe the deep interiors of small solar system bodies (SSBs), including comets, asteroids, and geologic structures on the surfaces of airless bodies. Applications include solar system science, planetary defense, and resource utilization. Our Phase I study demonstrated that muons, the long-range charged component of GCR showers, can penetrate SSBs up to a km in diameter, providing information on their interior structure. Muons produced in Earth’s atmosphere have been applied to image the interior of large objects for science and engineering. In Phase I, we found that the production of muons in the solid surfaces of airless bodies is much smaller than in Earth’s atmosphere. Nevertheless, the flux of transmitted muons is sufficient to detect inclusions within an asteroid or comet in a reasonable amount of time, ranging from hours to weeks, depending on the size of the SSB and the density contrast, position and size of the inclusion. For asteroids and comets, large density variations (e.g., porous soil or ice versus solid rock) are relatively easy to detect. The intrinsic spatial resolution of muon radiography (“muography”) is on the scale of a few meters. The spatial resolution that can be achieved in practice depends on signal intensity and integration time (counting statistics), the angular resolution of the muon tracker (hodoscope) and details of data reduction and analysis methodology. Our Phase II project will assess remaining unknowns for the application of muography to determining the interior structure of SSBs, assess risks for implementation, and provide a roadmap for development of SSB muography beyond the NIAC program. To achieve our objectives, we will focus on four interrelated tasks: Task1) Signal and background characterization: Characterize the production and transmission of muons and secondary particle backgrounds made by cosmic ray showers in SSBs; and near-surface features from radiographic and tomographic data; Task2) Imaging studies: Develop methods to determine the density structure of SSB interiors and near-surface features from radiographic and tomographic data; Task3) Instrument design: Using simulations and bench-top laboratory experiments, investigate specific concepts for the design of compact hodoscopes and components; Task4) Synthesis: Combine the results of the first three tasks to determine the range of applicability of the method, identify the steps needed for maturation of the concept, and explore concepts for a pilot muography mission.

Prettyman, Thomas H.↗

Defect Characterization of Monocrystalline Silicon Solar Cells with Polysilicon Passivated Contact Using Electrically-Detected Magnetic Resonance (EDMR) Spectroscopy

As the c-Si based solar cell efficiencies are approaching over 26%, it is becoming critical to characterize the low concentrations of the defects – as low as 10^10-10^11 cm-3 (for e.g., iron contamination in high-lifetime Ga-doped wafers3 and n-type wafers), and further reduce them. Also, atomistic level understanding of the mechanisms of the low concentration process-induced-defects and reliability limiting defects (such as light and elevated temperature induced degradation, surface passivation degradation) is needed to design the mitigation strategies. The conventional characterization techniques are limited due to their detection limitations. Some of the techniques based on lifetime spectroscopies can still be used for low concentration characterization however, they are based on estimations and theoretical models and hence, indirect and cannot fully reveal information about the microscopic mechanism of the defects. Thus, we present the application of an ultrasensitive magnetic resonance-based technique for the direct spectroscopic detection of the defects in Si PV - electrically detected magnetic resonance (EDMR). In this work, we aim to focus on establishing a process flow for fabrication of minicells with (miniature replica of the larger-area cells) and setting up the routine for EDMR measurements on them with the EDMR instrumentation capability at NREL. For the EDMR measurements, sample size is limited by the dimensions of sample holder tube (width less than 3.2 mm, active area - 20 mm). Thus, we have designed c-Si based minicells with polysilicon (poly-Si) passivated contacts same as the larger-area cells that we fabricate in our group at NREL. We also modified our minicell process flow for fabricating the textured minicells for preserving the texture during processing and taking care of the laser-ablation edge damage which can significantly affect the performance of such small devices. We have achieved comparable performance on these newly fabricated minicells as that of our 4 cm2 devices with same structure (comparable VOC, JSC, FF). We also conducted EDMR measurements on the minicells and observed a distinct EDMR signal at g-value ~2.005 at temperatures 30K and above, as shown in Fig. 2. We associate this signal to the presence of silicon dangling bonds based on the g-value. We also observed an EDMR signal at g-value ~1.998 at temperature ~5K. The origin of this signal is still being investigated. Thus, we show the proof of concept of minicells and EDMR measurements with which we now aim to study some of the unknown defects in silicon solar cell devices.

EDMR↗

Shock-induced fine-grained recrystallization of olivine - Evidence against subsolidus reduction of Fe/2+/

Electron spin resonance (ESR) studies have been carried out on three single grains of terrestrial olivine (Fo90) shock loaded along the 010 line to peak pressures of 280, 330, and 440 kbar. The results indicate that neither metallic Fe similar to that observed in returned lunar soils nor paramagnetic Fe(3+) caused by oxidation of Fe(2+) has been produced in these shock experiments. Trace amounts of Mn (2+) have been detected in both shocked and unshocked olivine. The ESR signals of Mn(2+) show spectral features which are found to correlate with the degree of shock-induced recrystallization observed petrographically. The increasing mass fraction of recrystallized olivine correlates with increasing shock pressures. This phenomenon is modelled assuming it results from the progressive effect of the shock-induced transformation of the olivine to a yet unknown high-pressure phase and its subsequent reversion to the low-pressure olivine phase. The mass fraction of recrystallized material is predicted to be nearly linear with shock pressure.

Ahrens, T. J.↗

Assessing Reliability of NDE Flaw Detection Using Smaller Number of Demonstration Data Points

The paper provides an engineering analysis approach for assessing reliability of NDE flaw detection using smaller number of demonstration data points. It explores dependence of probability of detection (POD), probability of false positive (POF), on contrast-to-noise ratio, and net decision threshold-to-noise ratio in a simulated data; and draws some generically applicable inferences to devise the approach. ASTM nondestructive evaluation standards provide requirements on signal-to-noise ratio and/or contrast-to-noise ratio in order to provide reliable flaw detection and limit false positive calls. POD analysis of inspection test data results in an estimated flaw size, denoted by 𝑎90/95. This flaw size has 90% POD and minimum 95% confidence. POF is also estimated in the analysis. POD demonstration requires specimens with flaws of known size. In many situations, it is very expensive to produce the large number of flaws required for the POD analysis. In some situations, only real flaws can truly represent the flaws for demonstration. Real flaws of correct size and location in part configuration specimen may be difficult to produce, if not impossible. Here, an engineering analysis approach is devised using simulation to assess reliability of NDE technique when a limited number of flaws are available for demonstration. In this simulation, a technique is considered reliable, if it provides flaw detectability size equal to or better than the theoretical 𝑎90𝑡ℎ used in simulation and also provides a POF less than or equal to a chosen value. The paper uses simulated signal response versus flaw size data to devise the approach. Linear correlation is used between the signal response data and flaw size. POD software mh1823 uses generalized linear model (GLM) in POD analysis after transforming the flaw size and signal response, if needed, using logarithm. Therefore, this approach is in agreement with the linear signal correlation used in mh1823. Using the POD analysis of data, generic conditions on contrast-to-noise ratio and net decision threshold-to-noise ratio are derived for reliable flaw detection. In order to assess technique reliability using the engineering approach, signal response-to-flaw size correlation about the flaw size of concern is needed. In addition, measurement of noise is also needed. If the technique meets the above requirements, assumption of linear signal-to-flaw size correlation and conditions on noise, then the technique can be assessed using this analysis as it fits the underlying POD model used here. The approach is conservative and is designed to provide a larger flaw size compared to the POD approach. Such NDE technique assessment approach, although, not as rigorous as POD, can be cost effective if the larger flaw size can be tolerated. Typically, this is a situation for all quality control NDE inspections. Here, an NDE technique needs to be reliable and 𝑎90/95 is not estimated, but the assessed flaw size is assumed to be larger than the unknown a90 due to conservative factors or margins. Applicability of the approach for assessing reliability of flaw detection in x-ray radiography and 2D imaging in general is also explored.

Koshti, Ajay M.↗

Separation of overlapping sources in bioacoustic mixtures

Source separation is an important step to study signals that are not easy or possible to record individually. Common methods such as deep clustering, however, cannot be applied to signals of an unknown number of sources and/or signals that overlap in time and/or frequency—a common problem in bioacoustic recordings. This work presents an approach, using a supervised learning framework, to parse individual sources from a spectrogram of a mixture that contains a variable number of overlapping sources. This method isolates individual sources in the time-frequency domain using only one function but in two separate steps, one for the detection of the number of sources and corresponding bounding boxes, and a second step for the segmentation in which masks of individual sounds are extracted. This approach handles the full separation of overlapping sources in both time and frequency using deep neural networks in an applicable manner to other tasks such as bird audio detection. This paper presents method and reports on its performance to parse individual bat signals from recordings containing hundreds of overlapping bat echolocation signals. This method can be extended to other bioacoustic recordings with a variable number of sources and signals that overlap in time and/or frequency.

Izadi, Mohammad Rasool↗

Gravitational Wave Sources as Timing References for LISA Data

In the megahertz gravitational-wave band, galactic ultra-compact binaries (UCBs) are continuous sources emitting at near-constant frequency. The signals from many of these galactic binaries will be sufficiently strong to be detectable by the Laser Interferometer Space Antenna (LISA) after approximately Omicron (1 week) of observing. In addition to their astrophysical value, these UCBs can be used to monitor the data quality of the observatory. This paper demonstrates the capabilities of galactic UCBs to be used as calibration sources for LISA by demanding signal coherence between adjacent week-long data segments separated by a gap in time of a priori unknown duration. A parameter for the gap duration is added to the UCB waveform model and used in a Markov-chain Monte Carlo algorithm simultaneously fitting for the astrophysical source parameters. Results from measurements of several UCBs are combined to produce a joint posterior on the gap duration. The measurement accuracy's dependence on how much is known about the UCBs through prior observing, and seasonal variations due to the LISA orbital motion, is quantified. The duration of data gaps in a two-week segment of data can be constrained to within approximately 0.2 s using Omicron (10) UCBs after one month of observing. The timing accuracy from UCBs improves to approximately or less than o.1 s after 1 year of mission operations. These results are robust to within a factor of approximately 2 when taking into account seasonal variations.

Gravitation Wave Sources↗

Timing and Multi-Channel: Novel Method for Determining the Neutrino Mass Ordering from Supernovae

One of the few remaining unknowns in the standard three-flavor neutrino oscillation paradigm is the ordering of neutrino masses. In this work we propose a novel method for determining neutrino mass ordering using the time information on early supernova neutrino events. In a core-collapse supernova, neutrinos are produced earlier than antineutrinos and, depending on the mass ordering which affects the adiabatic flavor evolution, may cause earlier observable signals in $\nu_e$ detection channels than in others. Hence, the time differences are sensitive to the mass ordering. We find that using the time information on the detection of the first galactic supernova events at future detectors like DUNE, JUNO and Hyper-Kamiokande, the mass ordering can already be determined at 2$\sigma$ CL, while $\mathcal{O}(10)$ events suffice for the discovery. Our method does not require high-statistics and could be used within the supernova early warning system (SNEWS) which will have access to the time information on early supernova neutrino events recorded in a number of detectors. The method proposed in this paper also implies a crucial interplay between the mass ordering and the triangulation method for locating supernovae.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Effect of natural gamma background radiation on portal monitor radioisotope unmixing

It is well known that national security relies on several layers of protection. One of the most important is the traffic control at borders and ports that exploits Radiation Portal Monitors (RPMs) to detect and deter potential smuggling attempts. Most portal monitors rely on plastic scintillators to detect gamma rays. Despite their poor energy resolution, their cost effectiveness and the possibility of growing them in large sizes make them the gamma-ray detector of choice in RPMs. Unmixing algorithms applied to organic scintillator spectra can be used to reliably identify the bare and unshielded radionuclides that triggered an alarm, even with fewer than 1000 detected counts and in the presence of two or three nuclides at the same time. In this work, we experimentally studied the robustness of a state-of-the-art unmixing algorithm to different radiation background spectra, due to varying atmospheric conditions, in the 16 °C to 28 °C temperature range. In the presence of background, the algorithm is able to identify the nuclides present in unknown radionuclide mixtures of three nuclides, when at least 1000 counts from the sources are detected. With fewer counts available, we found larger differences of approximately 35.9% between estimated nuclide fractions and actual ones. In these low count rate regimes, the uncertainty associated by our algorithm with the identified fractions could be an additional valuable tool to determine whether the identification is reliable or a longer measurement to increase the signal-to-noise ratio is needed. Moreover, the algorithm identification performances are consistent throughout different data sets, with negligible differences in the presence of background types of different intensity and spectral shape.

38 RADIATION CHEMISTRY, RADIOCHEMISTRY, AND NUCLEA↗

Heterodyne method for high specificity gas detection.

This paper describes a new technique for measuring trace quantities of gases. The technique involves the use of a reference cell (containing a known amount of the gas being sought) and a sample cell (containing an unknown amount of the same gas) wherein the gas densities are modulated. Light passing through the two cells in sequence is modulated in intensity at the vibrational-rotational lines characteristic of the absorption spectrum for the gas of interest. Since the absorption process is nonlinear, modulating the two absorption cells at two different frequencies gives rise to a heterodyning effect, which in turn introduces sum and difference frequencies in the detected signal. Measuring the ratio of the difference frequency signal for example, to the signal introduced by the reference cell provides a normalized measure of the amount of the gas in the sample cell. The readings produced are thereby independent of source intensity, window transparency, and detector sensitivity. Experimental evaluation of the technique suggests that it should be applicable to a wide range of gases, that it should be able to reject spurious signals due to unwanted gases, and that it should be sensitive to concentrations of the order of 10 to the minus 8th power when used with a sample cell of only 20 cm length.

Dimeff, J.↗