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DOE OSTI2022

Genome of Paspalum vaginatum and the role of trehalose mediated autophagy in increasing maize biomass

Abstract A number of crop wild relatives can tolerate extreme stress to a degree outside the range observed in their domesticated relatives. However, it is unclear whether or how the molecular mechanisms employed by these species can be translated to domesticated crops. Paspalum ( Paspalum vaginatum ) is a self-incompatible and multiply stress-tolerant wild relative of maize and sorghum. Here, we describe the sequencing and pseudomolecule level assembly of a vegetatively propagated accession of P. vaginatum . Phylogenetic analysis based on 6,151 single-copy syntenic orthologues conserved in 6 related grass species places paspalum as an outgroup of the maize-sorghum clade. In parallel metabolic experiments, paspalum, but neither maize nor sorghum, exhibits a significant increase in trehalose when grown under nutrient-deficit conditions. Inducing trehalose accumulation in maize, imitating the metabolic phenotype of paspalum, results in autophagy dependent increases in biomass accumulation.

59 BASIC BIOLOGICAL SCIENCES↗

DOE OSTI2024

Cropland abandonment between 1986 and 2018 across the United States: spatiotemporal patterns and current land uses

Knowing where and when croplands have been abandoned or otherwise removed from cultivation is fundamental to evaluating future uses of these areas, e.g. as sites for ecological restoration, recultivation, bioenergy production, or other uses. However, large uncertainties remain about the location and time of cropland abandonment and how this process and the availability of associated lands vary spatially and temporally across the United States. Here, we present a nationwide, 30 m resolution map of croplands abandoned throughout the period of 1986–2018 for the conterminous United States (CONUS). We mapped the location and time of abandonment from annual cropland layers we created in Google Earth Engine from 30 m resolution Landsat imagery using an automated classification method and training data from the U.S. Department of Agriculture Cropland Data Layer. Our abandonment map has overall accuracies of 0.91 and 0.65 for the location and time of abandonment, respectively. From 1986 to 2018, 12.3 (±2.87) million hectares (Mha) of croplands were abandoned across CONUS, with areas of greatest change over the Ogallala Aquifer, the southern Mississippi Alluvial Plain, the Atlantic Coast, North Dakota, northern Montana, and eastern Washington state. The average annual nationwide abandoned area across our study period was 0.51 Mha per year. Annual abandonment peaked between 1997 and 1999 at a rate of 0.63 Mha year –1 , followed by a continuous decrease to 0.41 Mha year –1 in 2009–2011. Among the abandoned croplands, 53% (6.5 Mha) changed to grassland and pasture, 18.6% (2.28 Mha) to shrubland and forest, 8.4% (1.03 Mha) to wetlands, and 4.6% (0.56 Mha) to non-vegetated lands. Of the areas that we mapped as abandoned, 19.6% (2.41 Mha) were enrolled in the Conservation Reserve Program as of 2020. Our new map highlights the long-term dynamic nature of agricultural land use and its relation to various competitive pressures and land use policies in the United States.

54 ENVIRONMENTAL SCIENCES↗

NASA NTRS2020

Gila Water Resources II: Using Earth Observations to Identify Wildfire Impacts on Hydrologic Functions and Recovery in the Gila National Forest

Wildfires have the potential to cause devastating and long-lasting impacts on ecological systems. In the Gila National Forest (Gila NF), wildfire events have occurred with increasing frequency and severity over recent years. These disturbances, such as the historic Whitewater Baldy Complex Fire (2012) and Silver Fire (2013), have raised concerns over post-fire flooding, debris flows, and vegetation recovery. Understanding connections between burn events and ecological functions is crucial for developing effective land management practices within the Gila NF that ensure conservation of the watershed. The Gila Water Resources II team worked in partnership with the US Department of Agriculture (USDA) US Forest Service’s (USFS) Gila National Forest and Region 3. This project provided insight into the influence of wildfires on increased flooding events and determined if restoration efforts in the Gila NF are having a beneficial impact on vegetation regeneration. To understand recovery trends and hydrologic impact in the Gila NF between 2000-2019, this project used Landsat 5 Thematic Mapper, Landsat 7 Enhanced Thematic Mapper Plus, Landsat 8 Operational Land Imager, Global Precipitation Measurement Integrated Multi-satellite Retrievals for GPM precipitation, along with ancillary data from USGS stream gauges and data provided by USDA USFS’s Gila National Forest and Region 3. Based on these data, the team identified burn areas that received restorative treatments and compared Normalized Burn Ratio for different land cover types to better inform land management decisions. Additionally, the team analyzed the relationship between precipitation and streamflow from stream gauges to investigate the impact wildfires have on hydrology within the watershed.

Water Resources↗

DOE OSTI2021

Conservation management decreases surface runoff and soil erosion

Conservation management practices – including agroforestry, cover cropping, no-till, reduced tillage, and residue return – have been applied for decades to control surface runoff and soil erosion, yet results have not been integrated and evaluated across cropping systems. In this study we collected data comparing agricultural production with and without conservation management strategies. We used a bootstrap resampling analysis to explore interactions between practice type, soil texture, surface runoff, and soil erosion. We then used a correlation analysis to relate changes in surface runoff and soil erosion to 13 other soil health and agronomic indicators, including soil organic carbon, soil aggregation, infiltration, porosity, subsurface leaching, and cash crop yield. Across all conservation management practices, surface runoff and erosion had respective mean decreases of 67% and 80% compared with controls. Use of cover cropping provided the largest decreases in erosion and surface runoff, thus emphasizing the importance of maintaining continuous vegetative cover on soils. Coarse- and medium-textured soils had greater decreases in both erosion and runoff than fine-textured soils. Changes in surface runoff and soil erosion under conservation management were highly correlated with soil organic carbon, aggregation, porosity, infiltration, leaching, and yield, showing that conservation practices help drive important interactions between these different facets of soil health. This study offers the first large-scale comparison of how different conservation agriculture practices reduce surface runoff and soil erosion, and at the same time provides new insight into how these interactions influence the improvement or loss of soil health.

58 GEOSCIENCES↗

DOE OSTI2024

Comprehensive Genome-Wide Natural Variation and Expression Analysis of Tubby-like Proteins Gene Family in Brachypodium distachyon

The Tubby-like proteins (TLPs) gene family is a group of transcription factors found in both animals and plants. In this study, we identified twelve B. distachyon TLPs, divided into six groups based on conserved domains and evolutionary relationships. We predicted cis-regulatory elements involved in light, hormone, and biotic and abiotic stresses. The expression patterns in response to light and hormones revealed that BdTLP3, 4, 7, and 14 are involved in light responses, and BdTLP1 is involved in ABA responses. Furthermore, BdTLP2, 7, 9, and 13 are expressed throughout vegetative and reproductive stages, whereas BdTLP1, 3, 5, and 14 are expressed at germinating grains and early vegetative development, and BdTLP4, 6, 8, and 10 are expressed at the early reproduction stage. The natural variation in the eleven most diverged B. distachyon lines revealed high conservation levels of BdTLP1-6 to high variation in BdTLP7-14 proteins. Based on diversifying selection, we identified amino acids in BdTLP1, 3, 8, and 13, potentially substantially affecting protein functions. This analysis provided valuable information for further functional studies to understand the regulation, pathways involved, and mechanism of BdTLPs.

Plant Sciences↗

DOE OSTI2025

Satellite remote sensing for environmental sustainable development goals: A review of applications for terrestrial and marine protected areas

With few years left to achieve the vital United Nations Sustainable Development Goals (SDGs), member nations must urgently leverage technological advancements in environmental monitoring to succeed. Remote sensing now provides decades of global observations at a variety of spatio-temporal scales and a litany of data products to guide comprehensive measures for climate action, and aquatic and terrestrial biota preservation. Protected areas, such as national parks and wildlife preserves, represent largely untapped resources for both applying robust conservation measures and testing ambitious new approaches to sustainable development that could jumpstart the much-needed adoption of strategies to efficiently pursue global sustainability. This review summarizes recent demonstrated utilities of remotely sensed data applied to protected areas for research related to SDG goals 13, 14, and 15: “Climate Action”, “Life below Water”, and “Life on Land”. We identify successful uses of such data for each SDG, identify areas for improvement, and provide recommendations from the literature on how to expand what others have done to achieve lofty goals with global impact. We demonstrate that remote sensing provides a valuable tool for achieving SDGs as it facilitates monitoring vegetation health, water quality and condition, and climate variables at large spatial and fine temporal scales, while also evaluating the effectiveness of management and conservation practices. Issues remain, however, in that there is currently no reference from which to relate goal progress to human livelihoods. Further, the current relationship between remotely sensed indices and ecological services that determine sustainable development omit steps that would establish this connection.

54 ENVIRONMENTAL SCIENCES↗

NASA NTRS2022

Bryce Canyon Water Resources: Monitoring Vegetation Health and Water Availability in Bryce Canyon National Park for Drought Stress Mitigation Planning

Bryce Canyon National Park is home to groundwater-dependent ecosystems (GDEs) that are threatened by a multidecadal drought and increased groundwater extraction due to a spike in tourism. These ecosystems contain unique species that are only found in areas where near-surface groundwater is present, such as aspen groves and fens. These species contribute to the high biodiversity found in Bryce Canyon, which boosts an ecosystem’s productivity and the services it provides to the park. Unfortunately, many of these GDEs are too small to identify with traditional Earth observation platforms and are difficult to physically reach for monitoring purposes. This project partnered with the National Park Service to identify springs and seeps as a proxy for GDEs within Bryce Canyon from 2013–2022. Furthermore, this project tested the feasibility of various methods to detect and monitor springs and seeps and therefore facilitate the partner’s efforts to conserve these ecologically valuable GDEs in Bryce Canyon. The team mapped groundwater discharge with high resolution National Agriculture Imagery Program (NAIP) and assessed park vegetation trends with Landsat 8 Operational Land Imager (OLI) and PlanetScope imagery. In-situ precipitation data and the Western Land Data Assimilation System (WLDAS) were used to produce time series of climatic variables. Seeps and spring locations were predicted using random forest classification and maximum entropy machine learning models.

Groundwater dependent ecosystems↗

NASA NTRSDate not supplied

Florida Water Resources: Assessing Coastal Resiliency Across Florida's Aquatic Preserves Response To Hurricane Forces

Intensifying weather events, sea level rise, and extensive coastal development in Southwestern Florida are escalating the need for Florida’s mangrove conservation. These mangroves are imperative for coastline stabilization, habitat provision for native species, and water quality management. Our partner, the Florida Department of Environmental Protection (FDEP), Office of Resilience and Coastal Protection is tasked with monitoring and conserving the Charlotte Harbor, Estero Bay, Rookery Bay, and Pinellas County Aquatic Preserves. We developed the Growth, Resilience, and Optical Vegetation Evaluator (GROVE) Google Earth Engine toolset for partners to determine mangrove forest extent through time, analyze mangrove forest health, and collect several water quality parameters within the preserves from January 2002–August 2022. The toolset provides easily accessible data from Landsat 7 Enhanced Thematic Mapper Plus (ETM+), Landsat 8 Operational Land Imager (OLI), Landsat 9 Operational Land Imager 2 (OLI-2), and the Shuttle Radar Topography Mission (SRTM). Using training datasets of known mangrove forest locations, we also established a machine learning approach to create mangrove extent maps. Maps from all four preserves indicated migration of mangrove forests inland as the greatest areas of change were transitional zones. Additionally, normalized difference vegetation index (NDVI), normalized difference turbidity index (NDTI), and chlorophyll-a maps were generated for the partners. This project provides decision makers with a useful tool for understanding temporal changes in Florida’s aquatic preserves, identifying areas of ecological stress, and providing actionable data to make informed plans for mangrove preservation.

Samuel Perrello↗

NASA NTRS2022

Florida Water Resources: Assessing Coastal Resiliency Across Florida's Aquatic Preserves in Response to Hurricane Forces

Remote sensing↗

NASA NTRS2023

Southern Idaho Ecological Conservation: Investigating the Impact of Targeted Grazing to Improve Wetland Habitat in the Sterling Wildlife Management Area

Wetland ecosystems are vital for biodiversity conservation and ecosystem services. The Sterling Wildlife Management Area in Bingham County, Idaho, has management concerns about decadent and accumulated vegetation growth encroaching on wetland habitat, which presents challenges for wildlife, decreases biodiversity, and limits public access. Targeted grazing has been proposed as a sustainable alternative to chemical herbicides or burning. Land managers introduced targeted cattle grazing in January 2021 to reduce biomass. NASA DEVELOP partnered with the Idaho Department of Fish and Game to determine the impact of grazing using NASA Earth observations from Landsat 8 Operational Land Imager (OLI) in Google Earth Engine (GEE). Images were processed with TerrSet’s Land Change Modeler and ArcGIS Pro’s Change Detection Wizard to understand land changes following grazing. A Normalized Difference Vegetation Index (NDVI) analysis was performed to assess impacts on vegetation productivity and compare variance in biomass before and after grazing. A Normalized Difference Water Index (NDWI) was used to compare changes in the wetland and its vegetation content to evaluate the suitability of the area for migratory birds post-grazing. Results showed a decrease in the vegetation index and an increase in the water index postgrazing. The DEVELOP team’s analysis suggests that grazing helps break down thick, senesced vegetation and increase soil moisture. Providing a workflow model will aid partners in continuing to monitor this management area and other management areas across the state.

change detection↗

DOE OSTI2022

Restoration of Geographically Isolated Wetlands: An Amphibian-Centric Review of Methods and Effectiveness

Geographically isolated wetlands provide a critical habitat for pond-breeding amphibians, a taxa of broad conservation concern. Global wetland loss and degradation has made restoration essential for amphibian conservation. Restoration goals typically include recovering the wetlands’ physiochemical, hydrological, and ecological functions. However, for pond-breeding amphibians, successful restoration should also result in sustained populations, which is difficult to assess and infrequently reported. In this paper, we review the available evidence that restoration of geographically isolated wetlands promotes pond-breeding amphibian occupancy and population persistence. We provide an overview of restoration practices addressing hydrology, vegetation, and ecological processes within these unique environments and across spatial scales. We then summarize the evidence, and discuss the limitations, for evaluating successful restoration within the context of amphibian conservation across these categories. Finally, we provide recommendations for researchers and practitioners to leverage prior successes and establish systematic data collection and dissemination. Moving restoration of wetlands for amphibian conservation forward will require more robust data collection and reporting.

59 BASIC BIOLOGICAL SCIENCES↗

NASA NTRS1990

Investigation of biogeophysical feedback on the African climate using a two-dimensional model

A numerical scheme is specifically designed to develop a time-dependent climate model to ensure the conservation of mass, momentum, energy, and water vapor, in order to study the biogeophysical feedback for the climate of Africa. A vegetation layer is incorporated in the present two-dimensional climate model. Using the coupled climate-vegetation model, two tests were performed involving the removal and expansion of the Sahara Desert. Results show that variations in the surface conditions produce a significant feedback to the climate system. It is noted that the simulation responses to the temperature and zonal wind in the case of an expanded desert agree with the climatological data for African dry years. Perturbed simulations have also been performed by changing the albedo only, without allowing the variation in the vegetation layer. It is shown that the variation in latent heat release is significant and is related to changes in the vegetation cover. As a result, precipitation and cloud cover are reduced.

Xue, Yongkang↗

NASA NTRS1990

Waterbird use of coastal impoundments and management implications in east-central Florida

Monthly surveys were conducted on Kennedy Space Center for one year to determine densities of waterbirds within impounded salt marshes that were predominantly open water with little emergent vegetation. The objective was to assess the importance of these impoundments to waterbirds, particularly wading birds, which are species of special conservation concern. Water-level management for mosquito control and waterfowl provided habitat for an abundance of ducks, shorebirds, coots, and wading birds. Average densities throughout the year for these groups were 5.26, 412, 2.80, and 2.20 birds/ha, respectively. The majority of waterfowl were present during the winter. Shorebirds were most common during spring migration. Wading bird densities increased with declining water level. Due to the extensive alteration and development of coastal wetlands in central Florida, properly managed impoundments may provide important feeding areas for maintaining certain waterbird populations.

Breininger, David R.↗

DOE OSTI2023

The detection and attribution of extreme reductions in vegetation growth across the global land surface

Abstract Negative extreme anomalies in vegetation growth (NEGs) usually indicate severely impaired ecosystem services. These NEGs can result from diverse natural and anthropogenic causes, especially climate extremes (CEs). However, the relationship between NEGs and many types of CEs remains largely unknown at regional and global scales. Here, with satellite‐derived vegetation index data and supporting tree‐ring chronologies, we identify periods of NEGs from 1981 to 2015 across the global land surface. We find 70% of these NEGs are attributable to five types of CEs and their combinations, with compound CEs generally more detrimental than individual ones. More importantly, we find that dominant CEs for NEGs vary by biome and region. Specifically, cold and/or wet extremes dominate NEGs in temperate mountains and high latitudes, whereas soil drought and related compound extremes are primarily responsible for NEGs in wet tropical, arid and semi‐arid regions. Key characteristics (e.g., the frequency, intensity and duration of CEs, and the vulnerability of vegetation) that determine the dominance of CEs are also region‐ and biome‐dependent. For example, in the wet tropics, dominant individual CEs have both higher intensity and longer duration than non‐dominant ones. However, in the dry tropics and some temperate regions, a longer CE duration is more important than higher intensity. Our work provides the first global accounting of the attribution of NEGs to diverse climatic extremes. Our analysis has important implications for developing climate‐specific disaster prevention and mitigation plans among different regions of the globe in a changing climate.

59 BASIC BIOLOGICAL SCIENCES↗

DOE OSTI2022

Formulation of a Consistent Multi‐Species Canopy Description for Hydrodynamic Models Embedded in Large‐Scale Land‐Surface Representations of Mixed‐Forests

Abstract The plant hydrodynamic approach represents a recent advancement to land surface modeling, in which stomatal conductance responds to water availability in the xylem rather than in the soil. To provide a realistic representation of tree hydrodynamics, hydrodynamic models must resolve processes at the level of a single modeled tree, and then scale the resulting fluxes to the canopy and land surface. While this tree‐to‐canopy scaling is trivial in a homogeneous canopy, mixed‐species canopies require careful representation of the species properties and a scaling approach that results in a realistic description of both the canopy and individual‐tree hydrodynamics, as well as leaf‐level fluxes from the canopy and their forcing. Here, we outline advantages and pitfalls of three commonly used approaches for representing mixed forests in land surface models and present a new framework for scaling vegetation characteristics and fluxes in mixed forests. The new formulation scales fluxes from the tree to canopy level in an energy‐ and mass‐conservative way and allows for a consistent multi‐species/multi‐type canopy description by hydrodynamic models.

Bohrer, G.↗

DOE OSTI2021

Landscape-scale characterization of Arctic tundra vegetation composition, structure, and function with a multi-sensor unoccupied aerial system

The Arctic is experiencing some of the most rapid climate change on Earth, with strong impacts on tundra ecosystems that are characterized by high land-surface and vegetation heterogeneity. Previous studies have explored this complexity using satellite remote sensing, however these typically coarse spatial resolution data have generally missed sub-pixel heterogeneity, leaving critical gaps in our understanding of tundra vegetation dynamics from the community to landscape scales. To address these gaps, we collected very high-resolution (1-5 cm) optical, structural, and thermal data at three low-Arctic tundra sites on the Seward Peninsula, Alaska, using a multi-sensor unoccupied aerial system (UAS). We examined the application of these data to studying tundra vegetation dynamics, by quantifying (1) canopy height and thermoregulation (leaf-air temperature) of representative plant functional types (PFTs), (2) fine-scale patterns of vegetation composition across landscapes, and (3) impacts of fine-scale vegetation composition on landscape-scale variation of canopy height and thermoregulation. Our results show that deciduous tall shrubs (those that can potentially grow >2 m) had a strong cooling effect, with canopy temperatures significantly lower than local air temperatures and other PFTs. Increased cover of tall shrubs also had the potential to reduce the cover of low-stature PFTs across the landscape, potentially associated with their closed canopy (i.e., increased light competition) and strong thermoregulation. To understand the connections between fine-scale vegetation composition and large-scale ecosystem processes, we produced a random forest model which showed that fine-scale PFT composition accounted for 86.8% and 74.2% of the landscape-scale variation in canopy height and thermoregulation, respectively. These findings highlight the importance of spatially detailed characterization of tundra PFTs to improve our ecological understanding and model representation of tundra vegetation, also transcend our study to show the need for continued collection of similar datasets to better understand the impacts of surface heterogeneity on the mapping and modeling of tundra ecosystem dynamics, as well as assist with conservation management and biodiversity monitoring strategies.

54 ENVIRONMENTAL SCIENCES↗

NASA NTRSDate not supplied

Utilizing Earth Observations to Understand Landscape Patterns and Assist in Wildlife Management in Iona National Park, Angola

Following the end of the Angolan Civil War (1975-2002), human habitation in Iona National Park has grown exponentially, as has the livestock population. An ongoing drought beginning in 2017 has brought people, livestock, and wildlife into increasing competition for resources within the park. This study used Earth observation data, primarily Landsat and Sentinel imagery, to examine landscape trends to improve wildlife preservation approaches in Iona National Park, Angola. In collaboration with the NGO African Parks, we developed a robust land use and land cover (LULC) classification model using remote sensing data to augment sparse ground-based data in this arid land region. We used Google Earth Engine and a random forest classifier to map vegetation types, water bodies, and potential wildlife habitats. This analysis resulted in a high spatial resolution LULC time-series between 1984-2023, highlighting critical periods of socioecological change over the past 40 years. These results increased the partner’s ability to make scientifically grounded decisions about resource allocation and conservation priorities. This analysis supports the feasibility of applying remote sensing techniques coupled with machine learning models in dry regions, where standard survey methods are frequently limited by accessibility and resource availability. However, we identified limitations in ground-truth data and the difficulty of recognizing certain vegetation types in arid areas. Despite these limitations, the study demonstrated Earth observations' ability to transform wildlife management techniques in distant and data-scarce locations, providing a reproducible foundation for similar ecosystems around the world.

Emmanuel Aklie↗

NASA NTRS1974

ERTS-1 flood hazard studies in the Mississippi River Basin

The Spring 1973 Mississippi River flood was investigated using remotely sensed data from ERTS-1. Both manual and automatic analyses of the data indicate that ERTS-1 is extremely useful as a regional tool for flood and floodplain management. The maximum error of such flood area measurements is conservatively estimated to be less than five percent. Change detection analysis indicates that the flood had major impacts on soil moisture, land pattern stability, and vegetation stress. Flood hazard identification was conducted using photointerpretation techniques in three study areas along the Mississippi River using pre-flood ERTS-1 imagery down to 1:100,000 scale. Flood prone area boundaries obtained from ERTS-1 were generally in agreement with flood hazard maps produced by the U.S. Army Corps of Engineers and the U.S. Geological Survey although the latter are somewhat more detailed because of their larger scale. Initial results indicate that ERTS-1 digital mapping of the flood-prone areas can be performed at least 1:62,500 which is comparable to conventional flood hazard map scales.

Rango, A.↗