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Confidence-Based Feature Acquisition

Confidence-based Feature Acquisition (CFA) is a novel, supervised learning method for acquiring missing feature values when there is missing data at both training (learning) and test (deployment) time. To train a machine learning classifier, data is encoded with a series of input features describing each item. In some applications, the training data may have missing values for some of the features, which can be acquired at a given cost. A relevant JPL example is that of the Mars rover exploration in which the features are obtained from a variety of different instruments, with different power consumption and integration time costs. The challenge is to decide which features will lead to increased classification performance and are therefore worth acquiring (paying the cost). To solve this problem, CFA, which is made up of two algorithms (CFA-train and CFA-predict), has been designed to greedily minimize total acquisition cost (during training and testing) while aiming for a specific accuracy level (specified as a confidence threshold). With this method, it is assumed that there is a nonempty subset of features that are free; that is, every instance in the data set includes these features initially for zero cost. It is also assumed that the feature acquisition (FA) cost associated with each feature is known in advance, and that the FA cost for a given feature is the same for all instances. Finally, CFA requires that the base-level classifiers produce not only a classification, but also a confidence (or posterior probability).

Wagstaff, Kiri L.↗

The effect of the atmosphere on the classification of satellite observations to identify surface features

The effect of differences in atmospheric turbidity on the classification of Landsat 1 observations of a rural scene is presented. The observations are classified by an unsupervised clustering technique. These clusters serve as a training set for use of a maximum-likelihood algorithm. The measured radiances in each of the four spectral bands are then changed by amounts measured by Landsat 1. These changes can be associated with a decrease in atmospheric turbidity by a factor of 1.3. The classification of 22% of the pixels changes as a result of the modification. The modified observations are then reclassified as an independent set. Only 3% of the pixels have a different classification than the unmodified set. Hence, if classification errors of rural areas are not to exceed 15%, a new training set has to be developed whenever the difference in turbidity between the training and test sets reaches unity.

Fraser, R. S.↗

Remote sensing of earth terrain

In remote sensing, the encountered geophysical media such as agricultural canopy, forest, snow, or ice are inhomogeneous and contain scatters in a random manner. Furthermore, weather conditions such as fog, mist, or snow cover can intervene the electromagnetic observation of the remotely sensed media. In the modelling of such media accounting for the weather effects, a multi-layer random medium model has been developed. The scattering effects of the random media are described by three-dimensional correlation functions with variances and correlation lengths corresponding to the fluctuation strengths and the physical geometry of the inhomogeneities, respectively. With proper consideration of the dyadic Green's function and its singularities, the strong fluctuation theory is used to calculate the effective permittivities which account for the modification of the wave speed and attenuation in the presence of the scatters. The distorted Born approximation is then applied to obtain the correlations of the scattered fields. From the correlation of the scattered field, calculated is the complete set of scattering coefficients for polarimetric radar observation or brightness temperature in passive radiometer applications. In the remote sensing of terrestrial ecosystems, the development of microwave remote sensing technology and the potential of SAR to measure vegetation structure and biomass have increased effort to conduct experimental and theoretical researches on the interactions between microwave and vegetation canopies. The overall objective is to develop inversion algorithms to retrieve biophysical parameters from radar data. In this perspective, theoretical models and experimental data are methodically interconnected in the following manner: Due to the complexity of the interactions involved, all theoretical models have limited domains of validity; the proposed solution is to use theoretical models, which is validated by experiments, to establish the region in which the radar response is most sensitive to the parameters of interest; theoretically simulated data will be used to generate simple invertible models over the region. For applications to the remote sensing of sea ice, the developed theoretical models need to be tested with experimental measurements. With measured ground truth such as ice thickness, temperature, salinity, and structure, input parameters to the theoretical models can be obtained to calculate the polarimetric scattering coefficients for radars or brightness temperature for radiometers and then compare theoretical results with experimental data. Validated models will play an important role in the interpretation and classification of ice in monitoring global ice cover from space borne remote sensors in the future. We present an inversion algorithm based on a recently developed inversion method referred to as the Renormalized Source-Type Integral Equation approach. The objective of this method is to overcome some of the limitations and difficulties of the iterative Born technique. It recasts the inversion, which is nonlinear in nature, in terms of the solution of a set of linear equations; however, the final inversion equation is still nonlinear. The derived inversion equation is an exact equation which sums up the iterative Neuman (or Born) series in a closed form and, thus, is a valid representation even in the case when the Born series diverges; hence, the name Renormalized Source-Type Integral Equation Approach.

Yueh, Herng-Aung↗

ZENN: A thermodynamics-inspired computational framework for heterogeneous data–driven modeling

Traditional entropy-based methods—such as cross-entropy loss in classification problems—have long been essential tools for representing the information uncertainty and physical disorder in data and for developing artificial intelligence algorithms. However, the rapid growth of data across various domains has introduced new challenges, particularly the integration of heterogeneous datasets with intrinsic disparities. To address this, we introduce a zentropy-enhanced neural network (ZENN), extending zentropy theory into the data science domain via intrinsic entropy, enabling more effective learning from heterogeneous data sources. ZENN simultaneously learns both energy and intrinsic entropy components, capturing the underlying structure of multisource data. To support this, we redesign the neural network architecture to better reflect the intrinsic properties and variability inherent in diverse datasets. We demonstrate the effectiveness of ZENN on classification tasks and energy landscape reconstructions, showing its superior generalization capabilities and robustness-particularly in predicting high-order derivatives. In image and text classification tasks, ZENN demonstrates superior generalization by introducing a learnable temperature variable that models latent multisource heterogeneity, allowing it to surpass state-of-the-art models on CIFAR-10/100, BBC News, and AG News. As a practical application in materials science, we employ ZENN to reconstruct the Helmholtz energy landscape of Fe3Pt using data generated from density functional theory and capture key material behaviors, including negative thermal expansion and the critical point in the temperature–pressure space. Overall, this work presents a zentropy-grounded framework for data-driven machine learning, positioning ZENN as a versatile and robust approach for scientific problems involving complex, heterogeneous datasets.

36 MATERIALS SCIENCE↗

Analysis of simulated multispectral data from earth resources satellites

The validity of the applicability assumption was determined through the simulation of ERTS and Skylab data using available aircraft scanner systems. The research techniques compared aircraft multispectral scanner data obtained under nominal conditions at low altitudes. Maximum likelihood decision criteria algorithms implemented on a digital computer were used to classify training set data. Comparisons between percentages of correct classifications were made, along with implications as to the techniques of satellite analysis.

White, D. A.↗

The Land Analysis System (LAS) - A general purpose system for multispectral image processing

The present, general-purpose Land Analysis System (LAS) for image processing furnishes a comprehensive set of functions for the manipulation of MSS data; the initial version has more than 240 functions and utilities ranging from pixel manipulation to complex classification. A LAS user's guide describes each such function in terms of purpose, input parameters, illustrative examples, algorithms, error messages, and user codes. The LAS source code is so distributed as to simplify system maintenance; the Transportable Application Executive is employed as the user interface, thereby accommodating both expert and novice users by means of menus and tutored prompting.

Wharton, Stephen W.↗

Machine learning models for segmentation and classification of cyanobacterial cells

Abstract Timelapse microscopy has recently been employed to study the metabolism and physiology of cyanobacteria at the single-cell level. However, the identification of individual cells in brightfield images remains a significant challenge. Traditional intensity-based segmentation algorithms perform poorly when identifying individual cells in dense colonies due to a lack of contrast between neighboring cells. Here, we describe a newly developed software package called Cypose which uses machine learning (ML) models to solve two specific tasks: segmentation of individual cyanobacterial cells, and classification of cellular phenotypes. The segmentation models are based on the Cellpose framework, while classification is performed using a convolutional neural network named Cyclass. To our knowledge, these are the first developed ML-based models for cyanobacteria segmentation and classification. When compared to other methods, our segmentation models showed improved performance and were able to segment cells with varied morphological phenotypes, as well as differentiate between live and lysed cells. We also found that our models were robust to imaging artifacts, such as dust and cell debris. Additionally, the classification model was able to identify different cellular phenotypes using only images as input. Together, these models improve cell segmentation accuracy and enable high-throughput analysis of dense cyanobacterial colonies and filamentous cyanobacteria.

Huffine, Clair A.↗

Classification of dynamical Lie algebras generated by spin interactions on undirected graphs

Dynamical Lie algebras (DLAs) are a versatile tool for various topics that span from the expressibility-trainability of variational quantum algorithms (VQAs), to simulation of many body Hamiltonians. Quantum gates and most of the Hamiltonians of interest consist of local interactions; therefore, the analysis of all possible DLAs generated by 1- and 2-local operators is crucial for quantum simulation and VQAs on current hardware. Previously in [R. Wiersema et al ., npj Quantum Inf. 10 , 110 (2024)], we analyzed the DLAs on linear, circular and all-to-all topologies, and obtained results about their dimensions and algebraic structure. Here, in this work, we extend our analysis into any possible hardware topology and provide a classification of all DLAs generated by Pauli strings on any undirected interaction graph. Our results indicate that the DLAs depend solely on whether the connectivity or interaction graph is bipartite or not. In addition, we find that the non-trivial polynomially scaling DLAs appear only on 1D line or circle topologies, and all other DLAs have dimensions scaling exponentially with the system size. Together with the current VQA literature, our results imply that either the majority of VQAs are non-trainable, or we are yet to understand the role of DLAs on the trainability of VQAs.

Algebraic structures↗

SAR terrain classifier and mapper of biophysical attributes

In preparation for the launch of SIR-C/X-SAR and design studies for future orbital SAR, a program has made considerable progress in the development of an SAR terrain classifier and algorithms for quantification of biophysical attributes. The goal of this program is to produce a generalized software package for terrain classification and estimation of biophysical attributes and to make this package available to the larger scientific community. The basic elements of the SAR (Synthetic Aperture Radar) terrain classifier are outlined. An SAR image is calibrated with respect to known system and processor gains and external targets (if available). A Level 1 classifier operates on the data to differentiate: urban features, surfaces and tall and short vegetation. Level 2 classifiers further subdivide these classes on the basis of structure. Finally, biophysical and geophysical inversions are applied to each class to estimate attributes of interest. The process used to develop the classifiers and inversions is shown. Radar scattering models developed from theory and from empirical data obtained by truck-mounted polarimeters and the JPL AirSAR are validated. The validated models are used in sensitivity studies to understand the roles of various scattering sources (i.e., surface trunk, branches, etc.) in determining net backscatter. Model simulations of sigma (sup o) as functions of the wave parameters (lambda, polarization and angle of incidence) and the geophysical and biophysical attributes are used to develop robust classifiers. The classifiers are validated using available AirSAR data sets. Specific estimators are developed for each class on the basis of the scattering models and empirical data sets. The candidate algorithms are tested with the AirSAR data sets. The attributes of interest include: total above ground biomass, woody biomass, soil moisture and soil roughness.

Ulaby, Fawwaz T.↗

Evaluating Landsat classification accuracy from forest cover-type maps

The use of complete enumeration in the form of photointerpreted forest cover-type maps to evaluate the accuracy of Landsat classifications was compared with assessments made directly from the aerial photography. A computerized, geographic information system was utilized to compare the Landsat classifications with the cover-type maps on a pixel-by-pixel basis. Error maps of pixels which were similarly misclassified by a variety of algorithms contained a larger number of errors than were verified from the aerial photography. For the two test sites studied, only 67 and 52 percent of the pixels which were originally considered to be in error were substantiated as being in error. Discrepancies between the two results were primarily caused by definitional differences between the cover-type maps and the Landsat classifications, especially with regard to minimum-type size and crown closure estimates of forest land.

Hudson, W. D.↗

Multi-Angle Implementation of Atmospheric Correction (MAIAC) Algorithm

Multi-Angle Implementation of Atmospheric Correction (MAIAC) is a new algorithm developed for MODIS. MAIAC uses a time series analysis and processing of groups of pixels to perform simultaneous retrievals of aerosol properties and surface bidirectional reflectance without typical assumptions about the surface. It is a generic algorithm which works over both dark and bright land surfaces, including deserts. MAIAC has an internal Cloud Mask, a dynamic land-water-snow classification and a surface change mask which allows it to flexibly choose processing path over different surfaces. A distinct feature of MAIAC is a high 1 km resolution of aerosol retrievals which is required in different applications including the air quality analysis. The novel features of MAIAC include the high quality cloud mask, discrimination of aerosol type, including biomass burning smoke and dust, and detection of surface change - all required for high quality aerosol retrievals. An overview of the algorithm, results of AERONET validation, and examples of comparison with MODIS Collection 5 aerosol product and Deep Blue algorithm for different parts of the world, will be presented.

Lyapustin, A.↗

Unpaired image translation to mitigate domain shift in liquid argon time projection chamber detector responses

Deep learning algorithms often are developed and trained on a training dataset and deployed on test datasets. Any systematic difference between the training and a test dataset may severely degrade the final algorithm performance on the test dataset—what is known as the domain shift problem . This issue is prevalent in many scientific domains where algorithms are trained on simulated data but applied to real-world datasets. Typically, the domain shift problem is solved through various domain adaptation (DA) methods. However, these methods are often tailored for a specific downstream task, such as classification or semantic segmentation, and may not easily generalize to different tasks. This work explores the feasibility of using an alternative way to solve the domain shift problem that is not specific to any downstream algorithm. The proposed approach relies on modern Unpaired Image-to-Image (UI2I) translation techniques, designed to find translations between different image domains in a fully unsupervised fashion. In this study, the approach is applied to a domain shift problem commonly encountered in Liquid Argon Time Projection Chamber (LArTPC) detector research when seeking a way to translate samples between two differently distributed LArTPC detector datasets deterministically. This translation allows for mapping real-world data into the simulated data domain where the downstream algorithms can be run with much less domain-shift-related performance degradation. Conversely, using the translation from the simulated data to a real-world domain can increase the realism of the simulated dataset and reduce the magnitude of any systematic uncertainties. To evaluate the quality of the translations, we use both pixel-wise metrics and a downstream task to measure the effectiveness of UI2I methods for mitigating the domain shift problem. We adapted several popular UI2I translation algorithms to work on scientific data and demonstrated the viability of these techniques for solving the domain shift problem with LArTPC detector data. To facilitate further development of DA techniques for scientific datasets, the ‘Simple Liquid-Argon Track Samples’ dataset used in this study is also published.

97 MATHEMATICS AND COMPUTING↗

Comprehensive defect evaluation of advanced nuclear fuels using high-resolution acoustic signals and optimized sensor separation

Graphite pebble composite structures based on TRistructural-ISOtropic (TRISO) particles are being developed as core nuclear fuels in advanced power reactors, promising safe operation at increased temperatures. Ensuring the structural integrity of these nuclear fuels requires comprehensive and accurate non-destructive evaluation (NDE) techniques to characterize defects and damage in the pebbles. However, traditional acoustic evaluation methods face limitations in defect characterization due to the highly attenuative, and geometrically and compositionally complex nature of these structures. This study proposes an improved acoustic NDE technique for accurate detection and classification of anticipated relevant defects and damage in graphite pebbles using high-resolution acoustic signals and optimized transmit-receive sensor networks. The proposed approach utilizes a triangular three-sensor network as the base unit, comprising three transmit-receive sensors. The sensor separation distance, as well as acoustic excitation center frequency, pulse-width, and bandwidth are optimized to enhance spatial resolution and improve signal-to-noise ratio, enabling effective characterization of the smallest size and widest range of defects in pebbles. Furthermore, the use of the triangular sensor configuration instead of a more conventional transmit-receive sensor pair expands the inspection region from a one-dimensional linear path to a two-dimensional area, increasing spatial coverage. To mitigate challenges associated with processing of complex acoustic signals arising from high-frequency, high-bandwidth excitation in these structures, a machine-learning-based signal processing algorithm is integrated with the sensor network. In the machine-learning-based algorithm, multi-domain features are extracted from the acoustic signals to capture intricate signal characteristics, significantly improving defect identification and classification compared to traditional approaches. The proposed acoustic NDE technique offers considerable promise for practical and reliable defect/damage diagnostics of advanced nuclear pebble fuels.

42 ENGINEERING↗

Functional protein mining with conformal guarantees

Molecular structure prediction and homology detection offer promising paths to discovering protein function and evolutionary relationships. However, current approaches lack statistical reliability assurances, limiting their practical utility for selecting proteins for further experimental and in-silico characterization. To address this challenge, we introduce a statistically principled approach to protein search leveraging principles from conformal prediction, offering a framework that ensures statistical guarantees with user-specified risk and provides calibrated probabilities (rather than raw ML scores) for any protein search model. Our method (1) lets users select many biologically-relevant loss metrics (i.e. false discovery rate) and assigns reliable functional probabilities for annotating genes of unknown function; (2) achieves state-of-the-art performance in enzyme classification without training new models; and (3) robustly and rapidly pre-filters proteins for computationally intensive structural alignment algorithms. Our framework enhances the reliability of protein homology detection and enables the discovery of uncharacterized proteins with likely desirable functional properties.

59 BASIC BIOLOGICAL SCIENCES↗

Land Analysis System (LAS)

Version 4.1 of LAS provides flexible framework for algorithm development and processing and analysis of image data. Over 500,000 lines of code enable image repair, clustering, classification, film processing, geometric registration, radiometric correction, and manipulation of image statistics.

Pease, P. B.↗

Tomographic separation of composite spectra. The components of Plaskett's Star

The UV photospheric lines of Plaskett's Star (HD 47129), a 14.4 day period, double lined O-type spectroscopic binary were analyzed. Archival data from IUE (17 spectra well distributed in orbital phase) were analyzed with several techniques. A cross correlation analysis, which showed that the secondary produces significant lines in the UV, indicates that the mass ratio is q = 1.18 + or - 0.12 (secondary slightly more massive). A tomography algorithm was used to produce the separate spectra of the two stars in six spectral regions. The interpolated spectral classifications of the primary and secondary, 07.3 I and 06.2 I, respectively, were estimated through a comparison of UV line ratios with those in spectral standard stars. The intensity ratio of the stars in the UV is 0.53 + or - 0.05 (primary brighter). The secondary lines appear rotationally broadened, and the projected rotational velocity V sin i for this star is estimated to be 310 + or - 20 km/s. The possible evolutionary history of this system is discussed through a comparison of the positions of the components and evolutionary tracks in the H-R diagram.

Bagnuolo, William G., Jr.↗

Tomographic separation of composite spectra. I - The components of Plaskett's Star

The UV photospheric lines of Plaskett's Star (HD 47129), a 14.4 day period, double lined O-type spectroscopic binary were analyzed. Archival data from IUE (17 spectra well distributed in orbital phase) were analyzed with several techniques. A cross correlation analysis, which showed that the secondary produces significant lines in the UV, indicates that the mass ratio is q = 1.18 +/- 0.12 (secondary slightly more massive). A tomography algorithm was used to produce the separate spectra of the two stars in six spectral regions. The interpolated spectral classifications of the primary and secondary, 07.3 I and 06.2 I, respectively, were estimated through a comparison of UV line ratios with those in spectral standard stars. The intensity ratio of the stars in the UV is 0.53 +/- 0.05 (primary brighter). The secondary lines appear rotationally broadened, and the projected rotational velocity V sin i for this star is estimated to be 310 +/- 20 km/s. The possible evolutionary history of this system is discussed through a comparison of the positions of the components and evolutionary tracks in the H-R diagram.

Bagnuolo, William G., Jr.↗

Cloud Classification in Polar and Desert Regions and Smoke Classification from Biomass Burning Using a Hierarchical Neural Network

This research focuses on a new neural network scene classification technique. The task is to identify scene elements in Advanced Very High Resolution Radiometry (AVHRR) data from three scene types: polar, desert and smoke from biomass burning in South America (smoke). The ultimate goal of this research is to design and implement a computer system which will identify the clouds present on a whole-Earth satellite view as a means of tracking global climate changes. Previous research has reported results for rule-based systems (Tovinkere et at 1992, 1993) for standard back propagation (Watters et at. 1993) and for a hierarchical approach (Corwin et al 1994) for polar data. This research uses a hierarchical neural network with don't care conditions and applies this technique to complex scenes. A hierarchical neural network consists of a switching network and a collection of leaf networks. The idea of the hierarchical neural network is that it is a simpler task to classify a certain pattern from a subset of patterns than it is to classify a pattern from the entire set. Therefore, the first task is to cluster the classes into groups. The switching, or decision network, performs an initial classification by selecting a leaf network. The leaf networks contain a reduced set of similar classes, and it is in the various leaf networks that the actual classification takes place. The grouping of classes in the various leaf networks is determined by applying an iterative clustering algorithm. Several clustering algorithms were investigated, but due to the size of the data sets, the exhaustive search algorithms were eliminated. A heuristic approach using a confusion matrix from a lightly trained neural network provided the basis for the clustering algorithm. Once the clusters have been identified, the hierarchical network can be trained. The approach of using don't care nodes results from the difficulty in generating extremely complex surfaces in order to separate one class from all of the others. This approach finds pairwise separating surfaces and forms the more complex separating surface from combinations of simpler surfaces. This technique both reduces training time and improves accuracy over the previously reported results. Accuracies of 97.47%, 95.70%, and 99.05% were achieved for the polar, desert and smoke data sets.

Alexander, June↗