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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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At least 541 records · Page 30
All sourcesNASA NTRSDOE OSTI
DOE OSTI2019

The Observability of Vortex-driven Spiral Arms in Protoplanetary Disks: Basic Spiral Properties

Some circumstellar disks are observed to show prominent spiral arms in infrared scattered light or (sub-)millimeter dust continuum. The spirals might be formed from self-gravity, shadows, or planet–disk interactions. Recently, it was hypothesized that massive vortices can drive spiral arms in protoplanetary disks in a way analogous to planets. In this paper, we study the basic properties of vortex-driven spirals by the Rossby Wave Instability in 2D hydrodynamics simulations. We study how the surface density contrast, the number, and the shape of vortex-driven spirals depend on the properties of the vortex. We also compare vortex-driven spirals with those induced by planets. The surface density contrast of vortex-driven spirals in our simulations are comparable to those driven by a sub-thermal mass planet, typically a few to a few tens of Earth masses. In addition, different from the latter, the former is not sensitive to the mass of the vortex. Vortex-driven spiral arms are not expected to be detectable in current scattered light observations, and the prominent spirals observed in scattered light in a few protoplanetary disks, such as SAO 206462 (HD 135344B), MWC 758, and LkHα 330, are unlikely to be induced by the candidate vortices in them.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2015

A host plant genome ( Zizania latifolia ) after a century-long endophyte infection

In spite of the importance of host–microbe interactions in natural ecosystems, agriculture and medicine, the impact of long-term (especially decades or longer) microbial colonization on the dynamics of host genomes is not well understood. Moreover, the vegetable crop ‘Jiaobai’ with enlarged edible stems was domesticated from wild Zizania latifolia (Oryzeae) approximately 2000 years ago as a result of persistent infection by a fungal endophyte, Ustilago esculenta. Asexual propagation via infected rhizomes is the only means of Jiaobai production, and the Z. latifolia–endophyte complex has been maintained continuously for two centuries. Here, genomic analysis revealed that cultivated Z. latifolia has a significantly smaller repertoire of immune receptors compared with wild Z. latifolia. There are widespread gene losses/mutations and expression changes in the plant–pathogen interaction pathway in Jiaobai. Finally, these results show that continuous long-standing endophyte association can have a major effect on the evolution of the structural and transcriptomic components of the host genome.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2015

DEAD-box helicase DDX27 regulates 3′ end formation of ribosomal 47S RNA and stably associates with the PeBoW-complex

PeBoW, a trimeric complex consisting of pescadillo (Pes1), block of proliferation (Bop1), and the WD repeat protein 12 (WDR12), is essential for processing and maturation of mammalian 5.8S and 28S ribosomal RNAs. Applying a mass spectrometric analysis, we identified the DEAD-box helicase DDX27 as stably associated factor of the PeBoW-complex. DDX27 interacts with the PeBoW-complex via an evolutionary conserved F×F motif in the N-terminal domain and is recruited to the nucleolus via its basic C-terminal domain. This recruitment is RNA-dependent and occurs independently of the PeBoW-complex. Interestingly, knockdown of DDX27, but not of Pes1, induces the accumulation of an extended form of the primary 47S rRNA. We conclude that DDX27 can interact specifically with the Pes1 and Bop1 but fulfils critical function(s) for proper 3′ end formation of 47S rRNA independently of the PeBoW-complex. - Highlights: • DEAD-box helicase DDX27 is a new constituent of the PeBoW-complex. • The N-terminal F×F motif of DDX27 interacts with the PeBoW components Pes1 and Bop1. • Nucleolar anchoring of DDX27 via its basic C-terminal domain is RNA dependent. • Knockdown of DDX27 induces a specific defect in 3′ end formation of 47S rRNA.

60 APPLIED LIFE SCIENCES↗
DOE OSTI2014

Radiation increases the cellular uptake of exosomes through CD29/CD81 complex formation

Highlights: • Radiation increases cellular uptake of exosomes. • Radiation induces colocalization of CD29 and CD81. • Exosomes selectively bind the CD29/CD81 complex. • Radiation increases the cellular uptake of exosomes through CD29/CD81 complex formation. - Abstract: Exosomes mediate intercellular communication, and mesenchymal stem cells (MSC) or their secreted exosomes affect a number of pathophysiologic states. Clinical applications of MSC and exosomes are increasingly anticipated. Radiation therapy is the main therapeutic tool for a number of various conditions. The cellular uptake mechanisms of exosomes and the effects of radiation on exosome–cell interactions are crucial, but they are not well understood. Here we examined the basic mechanisms and effects of radiation on exosome uptake processes in MSC. Radiation increased the cellular uptake of exosomes. Radiation markedly enhanced the initial cellular attachment to exosomes and induced the colocalization of integrin CD29 and tetraspanin CD81 on the cell surface without affecting their expression levels. Exosomes dominantly bound to the CD29/CD81 complex. Knockdown of CD29 completely inhibited the radiation-induced uptake, and additional or single knockdown of CD81 inhibited basal uptake as well as the increase in radiation-induced uptake. We also examined possible exosome uptake processes affected by radiation. Radiation-induced changes did not involve dynamin2, reactive oxygen species, or their evoked p38 mitogen-activated protein kinase-dependent endocytic or pinocytic pathways. Radiation increased the cellular uptake of exosomes through CD29/CD81 complex formation. These findings provide essential basic insights for potential therapeutic applications of exosomes or MSC in combination with radiation.

60 APPLIED LIFE SCIENCES↗
DOE OSTI2026

Learning from nature’s plant engineers: Hijacking metabolism and development beyond genetics

Plant metabolism underpins the food, fiber, and fuel that support our economy, driving strong interest in new strategies to rewire plant metabolism for emerging applications. While most synthetic biology efforts are reliant on genetic engineering, plants can be manipulated in many other ways that remain comparatively underexplored. Across nature, diverse organisms, including bacteria, fungi, and insects, have evolved sophisticated mechanisms to exploit plant metabolic richness, reshaping it for purposes that span from basic nutrition to the construction of complex, novel structures for shelters. These interspecies interactions and non-model systems represent unique manners in which plants can be reprogrammed or hijacked by other organisms, offering inspiration for novel approaches to engineering plant metabolism. By better understanding the basis of how organisms induce these remarkable transformations in plants, we can expand the conceptual boundaries of synthetic biology and reveal alternative routes to manipulating plants for the production of a diverse array of valuable compounds and materials. Deeper insight into these mechanisms will yield novel blueprints for rethinking the scope and breadth in which we can redesign plant metabolism across many applications.

Sarkiss, Anthony E. [University of California, Ber↗
DOE OSTI2016

Current understanding of interactions between nanoparticles and the immune system

The delivery of drugs, antigens, and imaging agents benefits from using nanotechnology-based carriers. The successful translation of nanoformulations to the clinic involves thorough assessment of their safety profiles, which, among other end-points, includes evaluation of immunotoxicity. The past decade of research focusing on nanoparticle interaction with the immune system has been fruitful in terms of understanding the basics of nanoparticle immunocompatibility, developing a bioanalytical infrastructure to screen for nanoparticle-mediated immune reactions, beginning to uncover the mechanisms of nanoparticle immunotoxicity, and utilizing current knowledge about the structure–activity relationship between nanoparticles' physicochemical properties and their effects on the immune system to guide safe drug delivery. In the present review, we focus on the most prominent pieces of the nanoparticle–immune system puzzle and discuss the achievements, disappointments, and lessons learned over the past 15 years of research on the immunotoxicity of engineered nanomaterials. - Graphical abstract: API — active pharmaceutical ingredient; NP — nanoparticles; PCP — physicochemical properties, CARPA — complement activation-related pseudoallergy, ICH — International Conference on Harmonization. Display Omitted - Highlights: • Achievements, disappointments and lessons learned over past decade are reviewed. • Areas in focus include characterization, immunotoxicity and utility in drug delivery. • Future direction focusing on mechanistic immunotoxicity studies is proposed.

60 APPLIED LIFE SCIENCES↗
DOE OSTI2025

Insights into the Oxidation Mechanism of Vivianite to Metavivianite from First-Principles Calculations

Vivianite, a hydrous ferrous iron-phosphate mineral (Fe 3 (PO 4 ) 2 ·8H 2 O), readily oxidizes in contact with air yielding the less hydrous mixed-valent iron-phosphate mineral metavivianite. This topotactic transformation nominally occurs by oxidative dehydrogenation in which outgoing electrons from the iron sublattice are charge compensated by hydrolysis of structural water. However, the details of this internal charge balancing mechanism that allows the structure to remain electrostatically stable remain unknown. Here, in this study, we use density functional theory (DFT) calculations and ab initio thermodynamics (AIT) to evaluate the energetics of this process in terms of hydrogen release as a function of environmental variables such as partial pressure and temperature. The results show a thermodynamic driving force for vivianite phase transformation as oxidation progresses that is triggered by its rigid structure that has a limited accommodation for hydrogen vacancies. In contrast, metavivianite has a more flexible lattice and hydrogen bond network that stabilizes these hydrogen defects. Metavivianite is shown to be a stable intermediate for 66% residual Fe 2+ down to 33% Fe 2+ , below which other phases/structures such as santabarbarite should be more thermodynamically favorable. Our study provides a basis for experimental tests of our mechanistic findings and helps fill a basic knowledge gap about the solid-state process that defines how vivianite interacts with its surrounding environment.

Sassi, Michel [Pacific Northwest National Laborato↗
DOE OSTI2019

Chiral molecules and the electron spin

The electron’s spin is necessary to the stability of matter, and control over the spin opens up avenues for manipulating the properties of molecules and materials. The Pauli exclusion principle requires that two electrons in a single spatial eigenstate have opposite spins, and this fact dictates basic features of atomic states and chemical bond formation. The energy associated with interacting electron clouds changes with their relative spin orientation, and by manipulating the spin directions, one can guide chemical transformations. However, controlling the relative spin orientation of electrons located on two reactants (atoms, molecules or surfaces) has proved challenging. Recent developments based on the chiral-induced spin selectivity (CISS) effect show that the spin orientation is linked to molecular symmetry and can be controlled in ways not previously imagined. For example, the combination of chiral molecules and electron spin opens up a new approach to (enantio)selective chemistry. Our Review describes the theoretical concepts underlying the CISS effect and illustrates its importance by discussing some of its manifestations in chemistry, biology and physics. Specifically, we discuss how the CISS effect allows for efficient long-range electron transfer in chiral molecules and how it affects biorecognition processes. Several applications of the effect are presented, and the importance of controlling relative spin orientations in multi-electron processes, such as electrochemical water splitting, is emphasized. We describe the enantiospecific interaction between ferromagnetic substrates and chiral molecules and how it enables the separation of enantiomers with ferromagnets. Lastly, we discuss the relevance of CISS effects to biological electron transfer, enantioselectivity and CISS-based spintronics applications.

36 MATERIALS SCIENCE↗
DOE OSTI2015

Evolution of rogue waves in dusty plasmas

The evolution of rogue waves associated with the dynamics of positively charged dust grains that interact with streaming electrons and ions is investigated. Using a perturbation method, the basic set of fluid equations is reduced to a nonlinear Schrödinger equation (NLSE). The rational solution of the NLSE is presented, which proposed as an effective tool for studying the rogue waves in Jupiter. It is found that the existence region of rogue waves depends on the dust-acoustic speed and the streaming densities of the ions and electrons. Furthermore, the supersonic rogue waves are much taller than the subsonic rogue waves by ∼25 times.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗
DOE OSTI2018

Ultrafast dynamics of spin and orbital correlations in quantum materials: an energy- and momentum-resolved perspective

Many remarkable properties of quantum materials emerge from states with intricate coupling between the charge, spin and orbital degrees of freedom. Ultrafast photo-excitations of these materials hold great promise for understanding and controlling the properties of these states. Here we introduce time-resolved resonant inelastic X-ray scattering (tr-RIXS) as a means of measuring the charge, spin and orbital excitations out of equilibrium. These excitations encode the correlations and interactions that determine the detailed properties of the states generated. After outlining the basic principles and instrumentation of tr-RIXS, we review our first observations of transient antiferromagnetic correlations in quasi two dimensions in a photo-excited Mott insulator and present possible future routes of this fast-developing technique. The increasing number of X-ray free electron laser facilities not only enables tackling long-standing fundamental scientific problems, but also promises to unleash novel inelastic X-ray scattering spectroscopies.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗
DOE OSTI2024

An Approach to Realize Generalized Optimal Motion Primitives Using Physics Informed Neural Networks

Autonomous manipulation is a challenging problem in field robotics due to uncertainty in object properties, constraints, and coupling phenomenon with robot control systems. Humans learn motion primitives over time to effectively interact with the environment. We postulate that autonomous manipulation can be enabled by basic sets of motion primitives as well, but do not necessitate mimicking human motion primitives. Here, this work presents an approach to generalized optimal motion primitives using physics-informed neural networks. Our simulated and experimental results demonstrate that optimality is notionally maintained where the mean maximum observed final position percent error was 0.564% and the average mean error for all the trajectories was 1.53%. These results indicate that notional generalization is attained using a physics-informed neural network approach that enables near optimal real-time adaptation of primitive motion profiles.

97 MATHEMATICS AND COMPUTING↗
DOE OSTI2012

Precision Measurement of Electroproduction of pi 0 near Threshold

Electromagnetic production of neutral pions near threshold is the most basic, lowest energy reaction in which a new hadron is created. The electromagnetic interaction is well understood so measurements of this reaction can yield direct insight into the hadronic production mechanism. During the past three decades there have been many developments in both the measurement and theory of threshold pion production, starting with measurements of photo-production at Saclay in 1986 and at Mainz in 1990. These measurements indicated a surprising discrepancy with so-called Low Energy Theorems (LETs) which are based on quite fundamental symmetries and considerations. Chiral Perturbation Theory (ChPT) is an effective field theoretic description of the nuclear force which contains the underlying symmetries of the force but deals with nucleons and pions rather than quarks and gluons. It has the advantage of being applicable at low energies but requires tuning some parameters to experimental data. Once these parameters have been determined ChPT predicts how the reaction should behave as a function of the kinematic variable. When applied to the reaction, p(γ,π 0 )p, near threshold it explained the discrepancy with the LETs and made predictions for electroproduction, p(e,e'p)π 0 . Electroproduction measurements at Mainz in the 1990's showed a clear discrepancy with these predictions of ChPT; with parameters determined from one set of kinematics the data for a second set lay far from the predicted value. However, recently completed measurements at Mainz disagreed with their previous measurements. In the experiment presented here, measurements of neutral pion electroproduction,p(e,e'p)π 0 , were made in bins of momentum transfer, Q 2 , between Q 2 = 0.05 [GeV/c] 2 and Q 2 = 0.15 [GeV/c] 0 and of center-of-mass energy, W, between 0 ≤ W ≤ 30 MeV (above threshold). The experiment was performed in Hall A at the Jefferson Laboratory. Scattered electrons were detected in one of the two High Resolution Spectrometers while the recoiling protons were detected in the BigBite spectrometer. The results of the present experiment agree within uncertainties with the recent Mainz measurements and extend in W significantly beyond those measurements. The present data show significant disagreement with some terms in the cross section above Q 2 ~ 0.10 [GeV/c] 2 . For W ≥ 5 MeV the disagreement is very strong and consistent. Whether fitting new ChPT parameters to the recent data or adding more terms to the calculations would improve the agreement remains to be seen.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗
DOE OSTI2016

Preliminary Results from the PrimEx-II experiment at Jefferson Lab

Properties of the neutral pion, as the lightest hadron in Nature, are most sensitive to the basic symmetries and their partial breaking effects in the theory of the strong interaction (QCD). In particular, the po →gg decay width is primarily defined by the spontaneous chiral symmetry breaking effect (chiral anomaly) in QCD. The next order corrections to the anomaly have been shown to be small and are known to a 1% precision level. The PrimEx Collaboration at JLab has developed and performed two Primakoff type experiments to measure the po →gg decay width with a similar precision. The published result from the PrimEx-I experiment, G(p0 →gg ) = 7.82±0.14 (stat.)±0.17 (syst.) eV, was a factor of two more precise than the average value quoted in PDG-2010 [1]. The second experiment was performed in 2010 with a goal of 1.4% total uncertainty to address the next-to-leading-order theory calculations. The preliminary results from the PrimEx-II experiment are presented and discussed in this note.

Gasparian, Ashot↗
DOE OSTI2017

Monitoring nanoparticle synthesis in a carbon arc discharge environment, in situ

This work presents experimental and theoretical studies of gas-phase synthesis of fullerenes and carbon nanoparticles in the presence of an atmospheric-pressure, arc discharge plasma. Carbon arc discharges have been used for synthesizing carbon nanotubes for over 25 years, and have the potential for economically synthesizing industrial-scale quantities of fullerenes. However, the efficiency and selectivity of fullerene synthesis with carbon arc discharges are quite low. Optimizing carbon arc discharges for fullerene synthesis requires a thorough understanding of the dynamics behind gas-phase nanoparticle synthesis in the presence of an arc discharge plasma. We built a carbon arc discharge setup to study nanoparticle and fullerene synthesis. The laser-induced incandescence (LII) diagnostic was applied for monitoring nanoparticle synthesis, in situ. The LII diagnostic had previously been applied as a combustion diagnostic for in situ measurements of concentrations and sizes of soot particles in flame environments. Prior to the present study, it had never been applied for studying fullerenes, nor had it been applied to study nanoparticles in the presence of an atmospheric-pressure plasma. Therefore, experiments were designed that allowed for the calibration of the LII diagnostic with research-grade, arc-synthesized soot particles and carbon nanotubes. Additionally, the theory and models underpinning the LII diagnostic were adapted to include the presence of an atmospheric-pressure, arc-discharge plasma. Results presented in this work confirm the ability of the LII diagnostic to measure sizes of arc-synthesized nanoparticles in situ, and show the spatial location of high densities of arc-synthesized nanoparticles with respect to the arc discharge plasma. Determining the spatial location of nanoparticle synthesis and growth is crucial for understanding the background conditions (e.g. background gas temperature, electron densities ...) in which nanoparticles nucleate and grow in the arc discharge environment. Future work would involve combining the LII diagnostic with other laser-based diagnostics (e.g. Rayleigh scattering, laser-induced fluorescence) for a more comprehensive study of gas-phase nanoparticle synthesis and investigating fundamental basic-science questions related to low temperature plasma physics, and laser-nanoparticle interactions.

Nanotechnology↗
DOE OSTI2017

Autogenic succession and deterministic recovery following disturbance in soil bacterial communities

The response of bacterial communities to environmental change may affect local to global nutrient cycles; however the dynamics of these communities following disturbance are poorly understood, and are generally attributed to abiotic factors. Here, we subjected soil microcosms to a heat disturbance and followed the community composition of active bacteria over 50 days of recovery. Phylogenetic turnover patterns indicated that biotic interactions shaped the community during recovery, and that the disturbance imposed a strong selective pressure that persisted for up to 10 days, after which the importance of stochastic processes increased. Three successional stages were detected: a primary response (1-4 days after disturbance) in which surviving taxa increased in abundance; a secondary response phase (10-29 days), during which community dynamics slowed down, and a stability phase (after 29 days), during which the community tended towards its original composition. Furthermore, soil bacterial communities, despite their extreme diversity and functional redundancy, respond to disturbances like many macroecological systems and exhibit path-dependent, autogenic dynamics during secondary succession.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2022

Modeling and Analysis of a Novel Offshore Binary Species Free-Floating Longline Macroalgal Farming System

The investigation of innovative macroalgal cultivation is important and needed to optimize farming operations, increase biomass production, reduce the impact on the ecosystem, and lower system and operational costs. However, most macroalgal farming systems (MFSs) are stationary, which need to occupy a substantial coastal area, require extensive investment in farm infrastructure, and cost high fertilizer and anchoring expenses. This study aims to model, analyze, and support a novel binary species free-floating longline macroalgal cultivation concept. The expected outcomes could provide a basis for the design and application of the novel MFS to improve biomass production, decrease costs, and reduce the impact on the local ecosystem. In this paper, Saccharina latissima and Nereocystis luetkeana were modeled and validated, and coupled with longline to simulate the binary species MFS free float in various growth periods and associated locations along the US west coast. Further, the numerical predictions indicated the possibility of failure on the longline and breakage at the kelp holdfasts is low. However, the large forces due to an instantaneous change in dynamic loads caused by loss of hydrostatic buoyancy when the longline stretches out of the water would damage the kelps. Buoy-longline contact interactions could damage the buoy, resulting in the loss of the system by sinking. Furthermore, the kelp-longline and kelp-kelp entanglements could potentially cause kelp damage.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2021

Polymer Coatings on Virus-like Particle Nanoreactors at Low Ionic Strength—Charge Reversal and Substrate Access

Virus-like particles (VLPs) are a class of biomaterials which serve as platforms for achieving the desired functionality through interior and exterior modifications. Through ionic strength-mediated electrostatic interactions, VLPs have been assembled into hierarchically ordered materials. This work builds on predictive models to prepare polymer-coated VLP dusters at very low ionic strength. Zeta potential measurements showed that the clusters carried a strongly positive charge, a complete charge reversal from the VLP building block. SAXS analysis confirmed polymer adsorption onto the VLP exterior. Furthermore, we then studied the activity of an encapsulated enzyme toward small molecular and macromolecular substrates to determine the effect of each component of the hierarchically assembled material. We found that while encapsulation and polymer coating did not have a large effect on access to the enzyme by its native, small molecular substrate, substrate modification with a macromolecule caused the polymer coating and encapsulation to affect the access to the enzyme.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2014

Quantification of the transferability of a designed protein specificity switch reveals extensive epistasis in molecular recognition

Re-engineering protein–protein recognition is an important route to dissecting and controlling complex interaction networks. Experimental approaches have used the strategy of “second-site suppressors,” where a functional interaction is inferred between two proteins if a mutation in one protein can be compensated by a mutation in the second. Mimicking this strategy, computational design has been applied successfully to change protein recognition specificity by predicting such sets of compensatory mutations in protein–protein interfaces. To extend this approach, it would be advantageous to be able to “transplant” existing engineered and experimentally validated specificity changes to other homologous protein–protein complexes. Here, we test this strategy by designing a pair of mutations that modulates peptide recognition specificity in the Syntrophin PDZ domain, confirming the designed interaction biochemically and structurally, and then transplanting the mutations into the context of five related PDZ domain–peptide complexes. We find a wide range of energetic effects of identical mutations in structurally similar positions, revealing a dramatic context dependence (epistasis) of designed mutations in homologous protein–protein interactions. To better understand the structural basis of this context dependence, we apply a structure-based computational model that recapitulates these energetic effects and we use this model to make and validate forward predictions. The context dependence of these mutations is captured by computational predictions, our results both highlight the considerable difficulties in designing protein–protein interactions and provide challenging benchmark cases for the development of improved protein modeling and design methods that accurately account for the context.

59 BASIC BIOLOGICAL SCIENCES↗