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DOE OSTI2024

S-adenosyl-L-methionine is the unexpected methyl donor for the methylation of mercury by the membrane-associated HgcAB complex

Mercury (Hg) is a heavy metal that exhibits high biological toxicity. Monomethylmercury and dimethylmercury are neurotoxins and a significant environmental concern as they bioaccumulate and biomagnify within the aquatic food web. Microbial Hg methylation involves two proteins, HgcA and HgcB. Here, we show that HgcA and HgcB can be heterologously coexpressed, and the HgcAB complex can be purified. We demonstrated that HgcA is a membrane-associated cobalamin-dependent methyltransferase and HgcB is a ferredoxin-like protein containing two [4Fe-4S] clusters. Further, spectroscopic and kinetic results demonstrate that S-adenosyl-L-methionine (SAM) donates the methyl group to Hg in a two-step reaction involving a methylcob(III)alamin intermediate including Co-thiolate ligation from a conserved Cys residue. Our findings uncover a biological role for SAM in microbial Hg methylation.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

DOE OSTI2025

Building confidence in models for complex barrier systems for radionuclides

The modeling and simulation of the Cement-clay Interaction-Diffusion field (CI-D) experiment at the Mont Terri site in Switzerland presented here demonstrates that it is possible to capture the multiscale physical and chemical features of natural and engineered barrier systems for radionuclides. The simulations are successfully carried out with the newly developed CrunchODiTi high-performance computing software that accounts for multiple continua, including a continuum representing the electrical double layer (EDL) developed along negatively charged clay particles in clay rock. The simulation also accounts for both the complex three-dimensional (3D) geometry, expected as the norm in a geological waste repository, and the anisotropy of the geological formation. In addition, the high resolution of the model makes it possible to include "skin effects" developed at the interface between highly reactive materials, in this case between the high pH cement and the circumneutral but electrostatic Opalinus Clay. The successful history matching with the field experiment demonstrates that the distinct geochemical and physical properties of the cement and the Opalinus Clay in the CI-D experiment can be accounted for. Such analyses are essential for developing a defensible safety case for the underground storage of radioactive waste.

Sarsenbayev, Dauren↗

DOE OSTI2025

Structure of the D1-Val185Asn mutated photosystem II complex with slow O–O bond formation reveals changes in the Cl1 water channel

During photosynthesis, the photosystem II (PSII) enzyme catalyzes the light-driven oxidation of water, fueling life on Earth by storing light energy and releasing O 2 as a byproduct. Determining the molecular mechanism for this water oxidation reaction has been of significant interest for the development of synthetic catalysts, but many details remain elusive. One of the open questions is how protons are strategically removed from the active site, a Mn 4 CaO 5 cluster called the oxygen-evolving complex (OEC), during the reaction cycle via conserved water channels, and how proton transfer contributes to O–O bond formation energetics. Site-directed mutagenesis studies have investigated the role of conserved amino acid side chains in facilitating proton transfer. One of the most influential mutations is the Val185Asn substitution on the D1 subunit, which substantially slows O 2 release kinetics without abolishing catalytic activity. Forming a molecular understanding of how this mutation affects the active site will provide insight into the water oxidation reaction mechanism. Here, we investigated the structural basis of the Val185Asn substitution by determining a 1.99 Å-resolution cryo-EM structure. We observed that Asn185 orients away from the OEC and donates a H-bond to Cl1, a conserved chloride ion. We furthermore observed an alternative D2-Glu312-facing conformation of the D2-Lys317 side chain in the Cl1 water channel, a conformation that is consistent with recent models for proton transfer. These changes also produce perturbations to the hydrogen-bonding network. Overall, these finding provide insight into proton transfer in the Cl1 channel and its effect on the water oxidation reaction mechanism.

cryo-EM↗

DOE OSTI2025

Counter-Current Flow Limitation Studies in Complex Geometries Utilizing Interface Capturing Simulations Coupled with PID Flow Rate Controller

In nuclear thermal-hydraulic studies, counter-current flow limitation (CCFL) typically refers to steam rising at a fast rate such that it prevents coolant from draining down within a confined channel. CCFL is a crucial issue in nuclear reactor safety analysis. This study investigates CCFL in debris bed channels using high-resolution interface-capturing simulations. A novel proportional-integral-derivative flow rate controller is developed to efficiently achieve the CCFL conditions. Verification studies confirm that CCFL occurs under the same conditions with or without the controller, demonstrating that PID control ensures accurate prediction. Three debris bed channel geometries were examined: a cylindrical channel, a channel with small obstacles, and a channel with large obstacles. Results show that obstacles significantly impact flow behavior, interfacial shear, wall shear, and pressure gradients required for CCFL. Furthermore, the comparison with experimental data confirmed that simulations incorporating geometric complexities align more closely with experimental CCFL conditions. A pressure gradient correlation was also developed for CCFL prediction.

Counter-current flow limitation↗

DOE OSTI2025

Overcoming time and complexity limitations in molecular dynamics investigations of equilibrium melting

Abstract A hybrid Monte-Carlo molecular-dynamics method for determining solidus and liquidus compositions in multicomponent systems is presented that overcomes both the time limitations in conventional molecular dynamics that prevent the evolution of distinct solid and liquid compositions via diffusion and the complexity challenge that prevents use of thermodynamic assessment in systems of many components. This hybrid method is validated in the Cu–Ni system against an independent assessment of solidus and liquidus compositions based on the regular solution model. Strategies for efficient mapping of different phase diagrams, based on the thermodynamic parameter T 0 , the temperature at which two phases of the composition X 0 have equal free energies, are presented and then demonstrated for the copper-nickel fully miscible system and the gold–silicon eutectic system. A calculation of the solidus and liquidus sampled during the equilibrium melting of equiatomic CrMnFeCoNi is performed, indicating that this method has potential to be extended to the study of many component alloys.

Au-Si↗

DOE OSTI2024

Assessing the complex influences of water management on hydrological drought characteristics in Texas

The state of Texas in the United States is highly susceptible to drought. Its major rivers are subject to extensive water management (WM) activities in order to sustain multisectoral water demands, particularly during drought conditions. However, the impact of WM on the propagation dynamics and characteristics of hydrological drought (HD) in Texas remains unclear. To fill this gap, this study quantifies the influence of WM across 32 streamflow gauges along the mainstems of seven major rivers in Texas by comparing a variety of drought metrics under natural and managed conditions. Notably, we leveraged an extensive, naturalized streamflow dataset constructed by the Texas Commission on Environmental Quality, paired with gauge observations of managed conditions. Results indicate that at the multi-decadal scale, WM significantly reduced HD frequency across all seven rivers and at 81% of the gauges analyzed. Additionally, it increased the response timescale of HD across Texas’ major rivers by a median of 2.5 months. Conversely, the average-event duration and severity increased in most locations. Temporal analysis reveals that the WM impact on HD varied seasonally, with attenuation effects during mid-summer and early fall and intensification effects during late winter and spring. Additionally, WM was found to greatly increase the spatial variability of HD characteristics across the region. These findings emphasize the complexity of WM effects on HD and the necessity for nuanced strategies in managing HD under WM influences.

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2024

Focus on monitoring and control of complex supply systems

The ongoing rapid transformation of our energy supply challenges the operation and stability of electric power grids and other supply networks. This focus issue comprises new ideas and concepts in the monitoring and control of complex networks to address these challenges.

97 MATHEMATICS AND COMPUTING↗

DOE OSTI2026

From natural language to control signals: a conceptual framework for semantic channel finding in complex experimental infrastructure

Modern experimental platforms such as particle accelerators, fusion devices, telescopes, and industrial process control systems expose tens to hundreds of thousands of control and diagnostic channels, accumulated over decades of hardware evolution. Operators and AI systems alike depend on informal expert knowledge, inconsistent naming conventions, and scattered documentation to locate the signals required for monitoring, troubleshooting, and automated control, creating a persistent bottleneck for reliability, scalability, and emerging language-model-driven interfaces. We formalize semantic channel finding, the task of mapping natural-language intent to concrete control-system signals, as a general problem in complex experimental infrastructure, and introduce a four-paradigm conceptual framework to guide architecture selection based on facility-specific data regimes. The paradigms span (i) direct in-context lookup over small, curated channel dictionaries, (ii) constrained hierarchical navigation through structured trees, (iii) interactive agent exploration using iterative reasoning and tool-based database queries, and (iv) ontology-grounded semantic search that decouples channel meaning from facility-specific naming conventions. We demonstrate the practical feasibility of each paradigm through proof-of-concept implementations at four operational facilities spanning two orders of magnitude in scale: from compact free-electron lasers to large synchrotron light sources, operating under diverse control-system architectures ranging from clean hierarchical naming schemes to legacy environments with decades of heterogeneous conventions. Where evaluated against expert-curated operational queries, these instantiations achieve 90%–97% accuracy, validating the framework’s applicability across real-world deployment scenarios. To accelerate adoption across the broader scientific and industrial control-system community, we release open-source, plug-and-play implementations of all three interactive paradigms-direct lookup, hierarchical navigation, and middle-layer exploration-within the Osprey framework, together with tools for channel database generation, interactive testing, and minimal-configuration deployment. This work establishes semantic channel finding as a foundational capability for human-centric and agentic AI interfaces at large-scale facilities, providing both a systematic framework for architecture design and practical resources to enable adoption without building custom infrastructure from scratch.

channel finding↗

DOE OSTI2026

Ray-tracing image simulations of transparent objects with complex shape and inhomogeneous refractive index

Optical images of transparent three-dimensional objects can be different from a replica of the object’s cross section in the image plane, due to refraction at the surface or in the body of the object. Simulations of the object’s image are thus needed for the visualization and validation of physical models. We report ray tracing image simulations that achieved high physical fidelity, reproducing optical behaviors and image features not rendered in previous studies. We replicated brightfield microscopy images of drops with complex shapes, and images of pressure and shock waves traveling inside them. For high physical fidelity, the simulations must replicate the spatial and angular distribution of illumination rays, and both the experiment and the simulation must be designed for accurate optical modeling. The simulations are highly sensitive to the properties of the drops and can be used to diagnose and refine fluid dynamics models. The simulated images can also be optimized to extract multiple 3D properties from experimental images. Compared to specialized single-shot 3D imaging methods, this approach has the advantage that it preserves the experimental simplicity, the high resolution, and the visual interpretability characteristic to basic optical imaging. The techniques introduced here are directly applicable to optical microscopy, so they can be used in other fields, such as microfluidics and biology, to expand the type and the accuracy of three-dimensional information that can be extracted from basic optical images.

Cavitation↗

DOE OSTI2025

Electronic structure complexity and extremely large magnetoresistance in antiferromagnetic semimetal SmAgSb 2

SmAgSb 2 , a layered magnetic semimetal in the tetragonal 𝑅⁢𝑇⁢ Sb 2 family (𝑅 = Y, Sc, rare earth; 𝑇 = transition metal), is known to exhibit extremely large magnetoresistance (XMR) below its antiferromagnetic (AFM) transition temperature. Here, in this work, we present a comprehensive investigation combining magnetotransport measurements, density functional theory calculations accounting for electron correlation, and angle-resolved photoemission spectroscopy. Our results reveal a complex electronic structure characterized by a multiband Fermi surface and intricate magnetic ground states. We demonstrate that simple two-band models, previously employed in the literature, fail to consistently describe the observed transport phenomena. Notably, we report an XMR of approximately 25200% at 2 K under a 14 T magnetic field, significantly exceeding earlier reports for this material family and rivaling the performance of prominent nonmagnetic XMR systems. This pronounced enhancement below 𝑇 𝑁 suggests that the XMR originates from a combination of multiband electron-hole compensation and enhanced magnetic scattering in this correlated AFM semimetal.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗

DOE OSTI2025

Harnessing ionic complexity: A modeling approach for hierarchical ionic circuit design

Since the 1950s, soft ionic devices have evolved from individual components to an expanding library of sensors, actuators, signal transmitters, and processors. However, integrating these components into complex, multifunctional systems remains challenging due to the nonintuitive and nonlinear interactions between ionic elements. In this work, we address these fundamental challenges by developing a lumped element model that enables interrogation of the physics that governs ionic circuits, as well as rapid design and optimization. Our model captures features specific to ionic charge carriers, while preserving the hierarchical design flexibility and computational efficiency of traditional circuit modeling. We demonstrate that our model can not only fit individual device behavior but also accurately predict the behavior of larger circuits formed by combining those devices. Additionally, we show how our tool utilizes the intrinsic nonlinearities of ionic systems to enable extended functionality, revealing how factors such as ion enrichment, ion leakage, and polymer charge density influence performance. Lastly, we present a fully ionic power supply, sensor, control system, and actuator for a soft robot that adapts its motion in response to environmental salt, illustrating the tool’s potential to accelerate advancements in chemical sensing, biointerfacing, biomimetic systems, and adaptive materials.

42 ENGINEERING↗

DOE OSTI2024

Complex orders and chirality in the classical Kitaev-Γ model

It is well recognized that the low-energy physics of many Kitaev materials is governed by two dominant energy scales, the Ising-type Kitaev coupling 𝐾 and the symmetric off-diagonal Γ coupling. An understanding of the interplay between these two scales is therefore the natural starting point toward a quantitative description that includes subdominant perturbations that are inevitably present in real materials. This study focuses on the classical 𝐾−Γ model on the honeycomb lattice, with a specific emphasis on the region 𝐾< 0 and Γ > 0 , which is the most relevant for the available materials and which remains enigmatic in both quantum and classical limits, despite much effort. We employ large-scale Monte Carlo simulations on specially designed finite-size clusters and unravel the presence of a complex multisublattice magnetic order in a wide region of the phase diagram, whose structure is characterized in detail. We show that this order can be quantified in terms of a coarse-grained scalar-chirality order, featuring a counterrotating modulation on the two spin sublattices. Here, we also provide a comparison to previous studies and discuss the impact of quantum fluctuations on the phase diagram.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗

DOE OSTI2024

Resonant multiscalar production in the generic complex singlet model in the multi-TeV region

We develop benchmarks for resonant discalar production in the generic complex singlet scalar extension of the Standard Model (SM) with no additional symmetries, which contains two new scalars. These benchmarks maximize discalar resonant production modes at future 𝑝⁢𝑝 colliders: 𝑝⁢𝑝 → ℎ 2 → ℎ 1⁡ ℎ 1 , 𝑝⁢𝑝 → ℎ 2 → ℎ 1 ⁡ℎ 3 , and 𝑝⁢𝑝 → ℎ 2 → ℎ 3 ⁡ℎ 3 , where ℎ 1 is the observed SM-like Higgs boson and ℎ 2,3 are new scalars. The decays ℎ 2 → ℎ 1 ⁡ℎ 3 and ℎ 2 → ℎ 3 ⁡ℎ 3 may be the only way to discover ℎ 3 , leading to a discovery of two new scalars at once. Current LHC and projected future collider (HL-LHC, FCC-ee+HL-LHC, IL⁢C⁢500+HL-LHC) constraints on this model are used to produce benchmarks at the HL-LHC for ℎ 2 masses between 250 GeV and 1 TeV and a future 𝑝⁢𝑝 collider (FCC-hh) for ℎ 2 masses between 250 GeV and 12 TeV. We update the current LHC bounds on the singlet-Higgs boson mixing angle for these benchmarks. As the mass of ℎ 2 approaches the multi-TeV region, certain limiting behaviors of the maximum rates are uncovered due to theoretical constraints on the parameters. These limits, which can be derived analytically, are BR⁡(ℎ 2 → ℎ 1⁡ ℎ 1 ) → 0.25, BR⁡(ℎ 2 → ℎ 3 ⁡ℎ 3 ) → 0.5, and BR⁡(ℎ 2 → ℎ 1⁡ ℎ 3 ) → 0. It can also be shown that the maximum rates of 𝑝⁢𝑝 → ℎ 2 → ℎ 1 ⁡ℎ 1 and 𝑝⁢𝑝 → ℎ 2 → ℎ 3⁡ ℎ 3 approach the same value. Hence, all three ℎ 2 → ℎ 𝑖 ⁡ℎ 𝑗 decays are promising discovery modes for ℎ 2 masses at and below 𝒪⁡(1 TeV), while above 𝒪⁡(1 TeV) the decays ℎ 2 → ℎ 1 ⁡ℎ 1 and ℎ 2 → ℎ 3 ⁡ℎ 3 are more encouraging. We choose benchmark masses for ℎ 3 to produce a large range of decay signatures including multi-𝑏, multivector boson, and multi-SM-like Higgs production. As we will show, the behavior of the maximum rates leads to the surprising conclusion that in the multi-TeV region this model may be discovered in the Higgs quartet production mode via ℎ 2 → ℎ 3 ⁡ℎ 3 → 4⁢ℎ 1 decays before Higgs triple production is observed. The maximum di- and four Higgs production rates are similar in the multi-TeV range.

Extensions of Higgs sector↗

DOE OSTI2024

Toward UV models of kinetic mixing and portal matter. VI. A more complex dark matter sector?

Portal matter (PM), having both Standard Model (SM) and dark sector charges, can induce kinetic mixing between the 𝑈⁢(1) 𝐷 dark photon and the SM gauge fields at the 1-loop level offering an attractive mechanism by which light (≲1 GeV) thermal dark matter (DM) can interact with visible matter and obtain its observed relic density. In doing so, if the DM is fermionic, the CMB and other astrophysical observations inform us that it must be Majorana/pseudo-Dirac in nature to avoid velocity/temperature-independent 𝑠-wave annihilation to SM final states. How does this idea fit into a more UV-complete picture also including the SM interactions? There are some reasons to believe that at least a first step along this path may not lie too far away in energy due to the renormalization group equations running of the dark gauge coupling, which for a significant range of parameters, becomes nonperturbative at/before the ∼10’s of TeV energy range. This implies that 𝑈⁢(1) 𝐷 must become embedded in an asymptotically free, non-Abelian group, 𝐺 𝐷 , before this can occur. The breaking of this larger group then produces the masses for the PM and the additional gauge fields associated with 𝐺 𝐷 then can lead to new interactions between the SM and the dark sector. Following several bottom-up approaches, we have examined a set of distinctive and testable phenomenological features associated with this general setup, based upon a number of simplifying assumptions. Clearly, it behooves us to explore the impact of these specific assumptions on these predictions for the array of possible experimental tests of this class of models. In most past analyses it has been assumed that DM is a vectorlike, complex singlet under the group 𝐺 𝐷 . If this assumption is relaxed, the dark sector must be augmented by additional fermion(s) and the associated scalar fields needed to break the gauge symmetries while generating the needed Majorana-like mass terms for the DM. In this paper, we analyze the simplest extension of this kind wherein the DM lies in a vectorlike doublet of 𝐺 𝐷 , which we take to have the structure 𝑆⁢𝑈⁢(2) 𝐼 ×𝑈⁢(1) 𝑌 𝐼 as in earlier work, leading to new phenomenological implications. We find, for example, that given the current LHC search constraints on the masses of heavy gauge bosons, the production of these new dark states with large rates is unlikely to occur at colliders unless they are produced singly in 𝑔⁡𝑔 fusion or their pair production cross sections are resonantly enhanced. Here, we also find that an additional mechanism arises to generate hierarchal neutrino masses in such a setup.

Extensions of Higgs sector↗

DOE OSTI2026

Complexity in the medium-range order of gallium as a polyvalent liquid metal

Simplicity in chemical composition does not always translate into simplicity in the structures and dynamics of liquids and solids. Some elementary liquid metals, such as gallium, show unusual behaviors in thermodynamic and transport properties as a result of their complex atomic structure and dynamics. Here, in this work, we study the real-space atomic correlation function of liquid gallium by neutron scattering. In the pair-distribution function, there exist two kinds of medium-range order (MRO), characterized by oscillations beyond the first nearest neighbors. On the other hand, the first neighbor shell shows only one kind of bond. The two types of MRO are strongly overlapping in space and fluctuating in time. We propose that they are the basis for anomalous behavior of liquid gallium. This view challenges the current view that liquid gallium consists of fluctuating metallic and insulating domains. These findings shed light on the interpretation of similar microscopic anomalies observed in other semimetallic liquids.

Hua, Chengyun [Oak Ridge National Laboratory (ORNL↗

DOE OSTI2025

Probing soft X-ray induced photoreduction of a model Mn-complex at cryogenic conditions

Soft X-ray absorption spectroscopy of first row transition elements at their respective L -edges provides important information about the oxidation and spin states of the metal centers. However, the associated sample damage in radiation-sensitive samples substantially alters the electronic and chemical structures of redox-active metal centers. Here, we measure the soft X-ray spectrum of the model Mn III (acac) 3 complex containing a redox-active Mn III metal center in an octahedral environment with a superconducting transition-edge sensor detector. To reduce the secondary damage resulting primarily from the diffusion of radicals and electrons, the spectra are collected at 30 K and 80 K on solid samples. Starting from the first scan, we detect the contribution of X-ray induced sample damage leading to a change in the Mn II intensity. However, at low temperatures, particularly at 30 K, we do not observe a gradual increase in the radiation damage with successive scans with the X-ray beam at the same spot. At our estimated dose of 90 kGy, we find 62% of Mn III (acac) 3 is still intact at 30 K. However, at room temperature, we see a gradual increase in radiation damage with increasing numbers of scans at the same spot, which is consistent with the possibility of increased diffusion rates of secondary radicals and electrons as noted in other studies.

L-edge spectroscopy↗

DOE OSTI2025

Rotated-Droop Control for Enhanced Stability and Power Decoupling in Microgrids With Complex Line Impedances

Classical droop control in microgrids predominantly assumes inductive line impedance, which simplifies implementation but causes power coupling and steady-state errors in systems with resistive and inductive lines. This paper proposes a rotated-droop control strategy for grid-forming inverters that reformulates the power equations by incorporating the magnitude and angle of the line impedance within a rotated reference frame. This method enhances the decoupling of active and reactive power dynamics without increasing complexity or requiring communication links. A small-signal state-space model was created to capture the dynamic behavior of the system under varying impedance parameters, preserving the original droop gains by rotating the power control structure. This allows eigenvalue-based stability analysis and enhances damping and transient performance. Simulation and experimental results validated the improved power-sharing performance, faster response, and robustness of the proposed method under different impedance conditions. This approach maintains the decentralized structure of the conventional droop control while enabling greater adaptability and scalability, making it suitable for modern inverter-based microgrids with dynamic topologies.

Campo-Ossa, Daniel Dario [Univ. of Puerto Rico, Ag↗

DOE OSTI2025

Structural analysis of the NifL-NifA complex reveals the molecular basis of anti-activation of nitrogen fixation gene expression in Azotobacter vinelandii

Understanding the molecular basis of regulated nitrogen (N 2 ) fixation is essential for engineering N 2 -fixing bacteria that fulfill the demand of crop plants for fixed nitrogen, reducing our reliance on synthetic nitrogen fertilizers. In Azotobacter vinelandii and many other members of Proteobacteria, the two-component system comprising the anti-activator protein (NifL) and the Nif-specific transcriptional activator (NifA)controls the expression of nif genes, encoding the nitrogen fixation machinery. The NifL-NifA system evolved the ability to integrate several environmental cues, such as oxygen, nitrogen, and carbon availability. The nitrogen fixation machinery is thereby only activated under strictly favorable conditions, enabling diazotrophs to thrive in competitive environments. While genetic and biochemical studies have enlightened our understanding of how NifL represses NifA, the molecular basis of NifA sequestration by NifL depends on structural information on their interaction. Here, we present mechanistic insights into how nitrogen fixation is regulated by combining biochemical and genetic approaches with a low-resolution cryo-electron microscopy (cryo-EM) map of the oxidized NifL-NifA complex. Our findings define the interaction surface between NifL and NifA and reveal how this interaction can be manipulated to generate bacterial strains with increased nitrogen fixation rates able to secrete surplus nitrogen outside the cell, a crucial step in engineering improved nitrogen delivery to crop plants.

59 BASIC BIOLOGICAL SCIENCES↗