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At least 541 records · Page 30

Digital twins and deep learning segmentation of defects in monolayer MX 2 phases

Developing methods to understand and control defect formation in nanomaterials offers a promising route for materials discovery. Monolayer MX 2 phases represent a particularly compelling case for defect engineering of nanomaterials due to the large variability in their physical properties as different defects are introduced into their structure. However, effective identification and quantification of defects remain a challenge even as high-throughput scanning transmission electron microscopy methods improve. This study highlights the benefits of employing first principles calculations to produce digital twins for training deep learning segmentation models for defect identification in monolayer MX 2 phases. Around 600 defect structures were obtained using density functional theory calculations, with each monolayer MX 2 structure being subjected to multislice simulations for the purpose of generating the digital twins. Several deep learning segmentation architectures were trained on this dataset, and their performances evaluated under a variety of conditions such as recognizing defects in the presence of unidentified impurities, beam damage, grain boundaries, and with reduced image quality from low electron doses. Further, this digital twin approach allows benchmarking different deep learning architectures on a theory dataset, which enables the study of defect classification under a broad array of finely controlled conditions. It thus opens the door to resolving the underpinning physical reasons for model shortcomings and potentially chart paths forward for automated discovery of materials defect phases in experiments.

36 MATERIALS SCIENCE↗

Moving the needle: Employing deep reinforcement learning to push the boundaries of coarse-grained vaccine models

Highly mutable infectious disease pathogens (hm-IDPs) such as HIV and influenza evolve faster than the human immune system can contain them, allowing them to circumvent traditional vaccination approaches and causing over one million deaths annually. Agent-based models can be used to simulate the complex interactions that occur between immune cells and hm-IDP-like proteins (antigens) during affinity maturation—the process by which antibodies evolve. Compared to existing experimental approaches, agent-based models offer a safe, low-cost, and rapid route to study the immune response to vaccines spanning a wide range of design variables. However, the highly stochastic nature of affinity maturation and vast sequence space of hm-IDPs render brute force searches intractable for exploring all pertinent vaccine design variables and the subset of immunization protocols encompassed therein. To address this challenge, we employed deep reinforcement learning to drive a recently developed agent-based model of affinity maturation to focus sampling on immunization protocols with greater potential to improve the chosen metrics of protection, namely the broadly neutralizing antibody (bnAb) titers or fraction of bnAbs produced. Using this approach, we were able to coarse-grain a wide range of vaccine design variables and explore the relevant design space. Our work offers new testable insights into how vaccines should be formulated to maximize protective immune responses to hm-IDPs and how they can be minimally tailored to account for major sources of heterogeneity in human immune responses and various socioeconomic factors. Our results indicate that the first 3 to 5 immunizations, depending on the metric of protection, should be specially tailored to achieve a robust protective immune response, but that beyond this point further immunizations require only subtle changes in formulation to sustain a durable bnAb response.

60 APPLIED LIFE SCIENCES↗

Using pollen in turbidites for vegetation reconstructions

Turbidites, deposited by sub-aqueous gravity flows, are common in sedimentary archives worldwide and present a unique challenge and opportunity when reconstructing past vegetation through pollen analysis. When sampling pollen from a sediment core for palaeovegetation records, it is common practice to target background sediments (i.e. pelagic sediment) and avoid sampling turbidites, as they are presumed to portray a misleading picture of past vegetation. This assumption stems from our limited understanding of pollen abundance and distribution through turbidites, meaning that palynologists overlook deposits that could potentially be used to reconstruct past vegetation and climate. We present pollen assemblage and sedimentological data from four recent (<150 years) deep marine turbidite deposits from the Hikurangi Subduction Margin, Aotearoa-New Zealand, with the aim of understanding the abundance and distribution of pollen in fine-grained turbidites. We find that pollen is diluted in the bases of turbidites, but despite this dilution, the proportions of different pollen taxa remain consistent through each turbidite. These results confirm that pollen can be sampled from turbidites for palaeovegetation reconstructions and that sampling the fine-grained upper parts of turbidites will provide the best pollen recovery.

59 BASIC BIOLOGICAL SCIENCES↗

Adsorption of molecular iodine and alkyl iodides from spent-nuclear-fuel-reprocessing off-gas using reduced silver mordenite

Radioactive iodine is a hazardous byproduct of spent-nuclear-fuel reprocessing that must be removed from the off-gas stream before it can be discharged. Reduced silver mordenite (Ag 0 Z) is currently the baseline material for iodine capture in the U.S. Although the performance characteristics and capture mechanisms of I 2 and CH 3 I have been established, similar investigations into long-chain organic iodides have yet to be performed. In this study, thin beds of Ag 0 Z were loaded with I 2 , CH 3 I, C 4 H 9 I, and C 12 H 25 I (5 ppm to 50 ppm) carried in a dry air stream at 150°C. The maximum iodine capacity was 105 ± 5 mg I/g Ag 0 Z for all species. Saturated Ag 0 Z samples were characterized using scanning electron microscopy, X-ray fluorescence, X-ray photoelectron spectroscopy, diffuse reflectance UV–visible spectroscopy, pair distribution function analysis, and thermogravimetric analysis. Further, near-complete Ag utilization and similar physical/chemical properties were observed for all samples. Through a comparison with previous studies and an investigation of aged Ag 0 Z, we propose that iodine species react with Ag + at exchange sites, forming α-AgI within the mordenite channels, and with surface Ag 0 nanoparticles, yielding β-/γ-AgI. The available Ag sites in the interior (Ag + ) and exterior (Ag 0 ) of mordenite determine the adsorption capacity since α-AgI formation is limited by the total pore volume. Potential iodine uptake routes were summarized for aging and non-aging environments. A scalable predictive model was implemented for deep-bed iodine removal, and predictions were in good agreement with experimental data. Sensitivity analysis suggests that iodine uptake kinetics is governed by pore diffusion.

12 MANAGEMENT OF RADIOACTIVE AND NON-RADIOACTIVE W↗

Learning neural representations for X-ray ptychography reconstruction with unknown probes

X-ray ptychography provides exceptional nanoscale resolution and is widely applied in materials science, biology, and nanotechnology. However, its full potential is constrained by the critical challenge of accurately reconstructing images when the illuminating probe is unknown. Conventional iterative methods and deep learning approaches are often suboptimal, particularly under the low-signal conditions inherent to low-dose and high-speed experiments. These limitations compromise reconstruction fidelity and restrict the broader adoption of the technique. In this work, we introduce the Ptychographic Implicit Neural Representation (PtyINR), a self-supervised framework that simultaneously addresses the object- and probe-recovery problem. By parameterizing both as continuous neural representations, PtyINR performs end-to-end reconstruction directly from raw diffraction patterns without requiring any pre-characterization of the probe. Extensive evaluations demonstrate that PtyINR achieves superior reconstruction quality on both simulated and experimental data, with remarkable robustness under challenging low-signal conditions. Furthermore, PtyINR offers a generalizable, physics-informed framework for addressing probe-dependent inverse problems, making it applicable to a wide range of computational microscopy problems.

36 MATERIALS SCIENCE↗

pnnl/mol_dgnn

Molecular dynamics simulations often rely on parameterized atomistic potentials, which can be inaccurate compared to ab initio simulation methods. However, dynamic ab initio simulations come with high computational cost. Deep learning techniques offer a method to obtain both high accuracy and low cost predictions of dynamics. Our method gives a prediction of the structural dynamics of a molecule accounting for the prior dynamics, giving high-accuracy predictions at low computational cost

Ashby, Michael↗

A Gaseous Argon-Based Near Detector to Enhance the Physics Capabilities of DUNE

This document presents the concept and physics case for a magnetized gaseous argon-based detector system (ND-GAr) for the Deep Underground Neutrino Experiment (DUNE) Near Detector. This detector system is required in order for DUNE to reach its full physics potential in the measurement of CP violation and in delivering precision measurements of oscillation parameters. In addition to its critical role in the long-baseline oscillation program, ND-GAr will extend the overall physics program of DUNE. The LBNF high-intensity proton beam will provide a large flux of neutrinos that is sampled by ND-GAr, enabling DUNE to discover new particles and search for new interactions and symmetries beyond those predicted in the Standard Model.

47 OTHER INSTRUMENTATION↗

An Online Prototype Toolset for Predicting and Optimizing P&T Performance (FY23 Status Report)

A new web-based toolset is being developed to support ongoing remediation optimization efforts and implementation of an adaptive site management strategy for the 200 West Area Pump-and-Treat (P&T) system at the Hanford Site. This toolset, comprising the well performance index tool and the well optimization pre-screening tool, will offer a user-friendly interface to predict and optimize the P&T well network’s performance at a preliminary level. Efforts in fiscal year (FY) 2023 focused on three main components: updating the existing deep learning model for predicting P&T performance, designing and developing a prototype of a web-based performance index tool, and initiating the conceptual design of the well optimization pre-screening tool. The well performance index tool is based on a pre-trained deep learning model that allows users to select a target contaminant and well screen length, then visualize the predicted performance of potential new wells across the site. The well optimization pre-screening tool includes two separate modules: the pre-computed scenario viewer, which organizes and visualizes offline optimization simulation results, and the quick analysis module, which provides real-time model prediction using user-specified well locations. In FY24, the plan is to add web-based applications to SOCRATES for both the well performance prediction tool and the optimization prescreening tool, with accompanying user and theory guides. These tools are intended to enable an accessible, easily applied, and transparent approach to remedy planning and decision-making.

97 MATHEMATICS AND COMPUTING↗

Optimizing Alabama’s CO 2 Storage in Shelby County (Project OASIS) - Deliverable Task 7: Risk Assessment

The “Optimizing Alabama’s CO 2 Storage in Shelby County: Project OASIS” CarbonSAFE Phase II Project seeks to build on regional data sets that demonstrate that the subsurface within Shelby County, Alabama has the potential to store commercial volumes of CO 2 safely, permanently, and economically. The primary target CO 2 Storage Complex is the deep Ketona Dolomite located within a 140 square mile area of the Valley and Ridge Region of Alabama. This deep saline reservoir is beneath a confining system encompassing at least 6,500 ft of shales and other low permeability sediments. Project OASIS drilled a deep stratigraphic test well to confirm the geological properties of the confining system and storage reservoir(s) within the Storage Complex. The geological data was incorporated into numerical models to establish the areal extent of the CO 2 plume and help design the storage site and its monitoring system. The project is managed by the Southern States Energy Board (SSEB), an interstate compact organization consisting of governors and state legislative leaders from sixteen southern states, Puerto Rico, and the U.S. Virgin Islands, as well as an appointee by the President of the United States. The organizational compact provides it with access to state government organizations and legislatures. The Board also maintains an Associate Members program comprised of energy resource companies, utilities, trade groups, academic R&D science and technology experts and energy consultants. Further, the SSEB staff is experienced in managing and coordinating complex energy and environmental programs, from research programs to full-scale design and demonstrations of new and innovative technologies. Project OASIS is a public-private partnership of six entities with multiple principal investigators (PIs). SSEB’s Lead PI and Co-PI are responsible for all aspects of project performance in accordance with the DOE-NETL Cooperative Agreement. SSEB has issued subgrants to Advanced Resources International, Inc., Alabama A&M University, Auburn University, Crescent Resource Innovation, and Oklahoma State University. Advanced Resources International, Inc., issued subgrants to Baker Hughes and Loudon Technical Services for field services

20 FOSSIL-FUELED POWER PLANTS↗

Capacity Density Considerations for Floating Offshore Wind Farms in Ultradeep Waters

Capacity density describes the concentration of wind energy development in an area and is often specified in terms of megawatts-per-square-kilometer (MW/km2). Understanding capacity density trends in wind energy projects helps to inform both energy system and spatial planning efforts. Borrman et al. (2018) and Mulas Hernando et al. (2023) analyze capacity density trends for fixed-bottom offshore wind farms in Europe and the United States, respectively, and Cooperman et al. (2022) explores how floating offshore wind mooring technology choices may impact wind plant layout through setbacks from lease area boundaries in waters up to 1,300 m deep. Technical challenges facing floating offshore wind development in ultradeep waters (beyond 1,300 m) could impact achievable capacity densities, with potential implications to marine spatial planning and project economics. When compared to fixed-bottom commercial-scale wind farms, mooring system footprints from floating offshore wind systems can constrain capacity density in some circumstances. In this study, we conduct an initial investigation of how taut mooring configurations may constrain floating offshore wind turbine placement and estimate capacity density for representative floating wind plants in generic lease areas. In addition, we explore floating wind plant capacity density drivers in ultradeep waters by characterizing area utilization for a range of lease area characteristics. This analysis highlights the primary challenges that floating offshore wind systems may encounter in achieving capacity densities comparable to commercial-scale fixed-bottom projects at ultradeep water depths, from a technical standpoint.

capacity density↗

A workflow for segmenting soil and plant X-ray computed tomography images with deep learning in Google’s Colaboratory

X-ray micro-computed tomography (X-ray μCT) has enabled the characterization of the properties and processes that take place in plants and soils at the micron scale. Despite the widespread use of this advanced technique, major limitations in both hardware and software limit the speed and accuracy of image processing and data analysis. Recent advances in machine learning, specifically the application of convolutional neural networks to image analysis, have enabled rapid and accurate segmentation of image data. Yet, challenges remain in applying convolutional neural networks to the analysis of environmentally and agriculturally relevant images. Specifically, there is a disconnect between the computer scientists and engineers, who build these AI/ML tools, and the potential end users in agricultural research, who may be unsure of how to apply these tools in their work. Additionally, the computing resources required for training and applying deep learning models are unique, more common to computer gaming systems or graphics design work, than to traditional computational systems. To navigate these challenges, we developed a modular workflow for applying convolutional neural networks to X-ray μCT images, using low-cost resources in Google’s Colaboratory web application. Here we present the results of the workflow, illustrating how parameters can be optimized to achieve best results using example scans from walnut leaves, almond flower buds, and a soil aggregate. We expect that this framework will accelerate the adoption and use of emerging deep learning techniques within the plant and soil sciences.

59 BASIC BIOLOGICAL SCIENCES↗

Synchrophasor Measurements-based Events Detection Using Deep Learning

Deep learning algorithms have been developed for phasor measurement units (PMUs) analysis aiming at providing grid operators to observe and react to significant real-time changes in the grid associated with multiple factors (e.g., power generation and load variations, different type of faults, and equipment mailfunction), or for offline post-event system diagnostics. In this study, a Long Short-Term Memory (LSTM)-based deep neural network (DNN) is adopted and evaluated to identify the most appropriate model configurations for event detection and longer-term anomalous pattern extraction. The proposed DNN model shows the potential on long-term predictions with the ability to capture nonlinear and nonstationary mixture complex patterns in PMU datasets. Real-world PMU in the WECC system were used for model development and validation.

deep learning↗

Advances in solar forecasting: Computer vision with deep learning

Renewable energy forecasting is crucial for integrating variable energy sources into the grid. It allows power systems to address the intermittency of the energy supply at different spatiotemporal scales. To anticipate the future impact of cloud displacements on the energy generated by solar facilities, conventional modeling methods rely on numerical weather prediction or physical models, which have difficulties in assimilating cloud information and learning systematic biases. Augmenting computer vision with machine learning overcomes some of these limitations by fusing real-time cloud cover observations with surface measurements acquired from multiple sources. This Review summarizes recent progress in solar forecasting from multisensor Earth observations with a focus on deep learning, which provides the necessary theoretical framework to develop architectures capable of extracting relevant information from data generated by ground-level sky cameras, satellites, weather stations, and sensor networks. Overall, machine learning has the potential to significantly improve the accuracy and robustness of solar energy meteorology; however, more research is necessary to realize this potential and address its limitations.

14 SOLAR ENERGY↗

A deep learning approach to identify missing is-a relations in SNOMED CT

Abstract Objective SNOMED CT is the largest clinical terminology worldwide. Quality assurance of SNOMED CT is of utmost importance to ensure that it provides accurate domain knowledge to various SNOMED CT-based applications. In this work, we introduce a deep learning-based approach to uncover missing is-a relations in SNOMED CT. Materials and Methods Our focus is to identify missing is-a relations between concept-pairs exhibiting a containment pattern (ie, the set of words of one concept being a proper subset of that of the other concept). We use hierarchically related containment concept-pairs as positive instances and hierarchically unrelated containment concept-pairs as negative instances to train a model predicting whether an is-a relation exists between 2 concepts with containment pattern. The model is a binary classifier leveraging concept name features, hierarchical features, enriched lexical attribute features, and logical definition features. We introduce a cross-validation inspired approach to identify missing is-a relations among all hierarchically unrelated containment concept-pairs. Results We trained and applied our model on the Clinical finding subhierarchy of SNOMED CT (September 2019 US edition). Our model (based on the validation sets) achieved a precision of 0.8164, recall of 0.8397, and F1 score of 0.8279. Applying the model to predict actual missing is-a relations, we obtained a total of 1661 potential candidates. Domain experts performed evaluation on randomly selected 230 samples and verified that 192 (83.48%) are valid. Conclusions The results showed that our deep learning approach is effective in uncovering missing is-a relations between containment concept-pairs in SNOMED CT.

97 MATHEMATICS AND COMPUTING↗

A fine pore-preserved deep neural network for porosity analytics of a high burnup U-10Zr metallic fuel

Abstract U-10 wt.% Zr (U-10Zr) metallic fuel is the leading candidate for next-generation sodium-cooled fast reactors. Porosity is one of the most important factors that impacts the performance of U-10Zr metallic fuel. The pores generated by the fission gas accumulation can lead to changes in thermal conductivity, fuel swelling, Fuel-Cladding Chemical Interaction (FCCI) and Fuel-Cladding Mechanical Interaction (FCMI). Therefore, it is crucial to accurately segment and analyze porosity to understand the U-10Zr fuel system to design future fast reactors. To address the above issues, we introduce a workflow to process and analyze multi-source Scanning Electron Microscope (SEM) image data. Moreover, an encoder-decoder-based, deep fully convolutional network is proposed to segment pores accurately by integrating the residual unit and the densely-connected units. Two SEM 250 × field of view image datasets with different formats are utilized to evaluate the new proposed model’s performance. Sufficient comparison results demonstrate that our method quantitatively outperforms two popular deep fully convolutional networks. Furthermore, we conducted experiments on the third SEM 2500 × field of view image dataset, and the transfer learning results show the potential capability to transfer the knowledge from low-magnification images to high-magnification images. Finally, we use a pre-trained network to predict the pores of SEM images in the whole cross-sectional image and obtain quantitative porosity analysis. Our findings will guide the SEM microscopy data collection efficiently, provide a mechanistic understanding of the U-10Zr fuel system and bridge the gap between advanced characterization to fuel system design.

36 MATERIALS SCIENCE↗

EVs@Scale Deep Dive - SCM/VGI (Day 1: SCM/VGI Analysis)

The U.S. Department of Energy (DOE) Electric Vehicles at Scale Laboratory Consortium (EVs@Scale Lab Consortium) is accelerating research to support the establishment of a secure and scalable national network of charging infrastructure. Critical to this effort is an understanding of the potential grid impacts of EV charging and possible smart charge management (SCM) or vehicle-grid integration (VGI) capabilities that could mitigate these impacts. The EVs@Scale SCM/VGI Pillar is analyzing the impacts of EV charging and developing and demonstrating the capabilities of both SCM and VGI with many different vehicle use cases and grid scenarios. This Deep Dive Discussion from year 1 of the project encompasses the progress and future plans for the analysis components of the FUSE (Flexible charging to Unify the grid and transportation Sectors for Evs at scale) project.

ADVANCED PROPULSION SYSTEMS↗

EVs@Scale Deep Dive - SCM/VGI (Day 2: SCM/VGI Demonstration)

The U.S. Department of Energy (DOE) Electric Vehicles at Scale Laboratory Consortium (EVs@Scale Lab Consortium) is accelerating research to support the establishment of a secure and scalable national network of charging infrastructure. Critical to this effort is an understanding of the potential grid impacts of EV charging and possible smart charge management (SCM) or vehicle-grid integration (VGI) capabilities that could mitigate these impacts. The EVs@Scale SCM/VGI Pillar is analyzing the impacts of EV charging and developing and demonstrating the capabilities of both SCM and VGI with many different vehicle use cases and grid scenarios. This Deep Dive Discussion from year 1 of the project encompasses the progress and future plans for the demonstration components of the FUSE (Flexible charging to Unify the grid and transportation Sectors for Evs at scale) project.

ADVANCED PROPULSION SYSTEMS,POWER TRANSMISSION AND↗