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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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At least 541 records · Page 30
All sourcesNASA NTRSDOE OSTI
DOE OSTI2024

Metagenomic clustering links specific metabolic functions to globally relevant ecosystems

ABSTRACT Metagenomic sequencing has advanced our understanding of biogeochemical processes by providing an unprecedented view into the microbial composition of different ecosystems. While the amount of metagenomic data has grown rapidly, simple-to-use methods to analyze and compare across studies have lagged behind. Thus, tools expressing the metabolic traits of a community are needed to broaden the utility of existing data. Gene abundance profiles are a relatively low-dimensional embedding of a metagenome’s functional potential and are, thus, tractable for comparison across many samples. Here, we compare the abundance of KEGG Ortholog Groups (KOs) from 6,539 metagenomes from the Joint Genome Institute’s Integrated Microbial Genomes and Metagenomes (JGI IMG/M) database. We find that samples cluster into terrestrial, aquatic, and anaerobic ecosystems with marker KOs reflecting adaptations to these environments. For instance, functional clusters were differentiated by the metabolism of antibiotics, photosynthesis, methanogenesis, and surprisingly GC content. Using this functional gene approach, we reveal the broad-scale patterns shaping microbial communities and demonstrate the utility of ortholog abundance profiles for representing a rapidly expanding body of metagenomic data. IMPORTANCE Metagenomics, or the sequencing of DNA from complex microbiomes, provides a view into the microbial composition of different environments. Metagenome databases were created to compile sequencing data across studies, but it remains challenging to compare and gain insight from these large data sets. Consequently, there is a need to develop accessible approaches to extract knowledge across metagenomes. The abundance of different orthologs (i.e., genes that perform a similar function across species) provides a simplified representation of a metagenome’s metabolic potential that can easily be compared with others. In this study, we cluster the ortholog abundance profiles of thousands of metagenomes from diverse environments and uncover the traits that distinguish them. This work provides a simple to use framework for functional comparison and advances our understanding of how the environment shapes microbial communities.

54 ENVIRONMENTAL SCIENCES↗
NASA NTRS1973

Classification and distribution of WR stars and an interpretation of the WN sequence.

New observational data for Wolf-Rayet stars are interpreted in areas of atmospheric abundances, absolute magnitudes, Galactic distribution, distribution in M33, and bolometric luminosities. The observational data are used in support of arguments (1) that WN stars are helium stars of eight to fourteen solar masses with atmospheres which contain only a very low proportion of hydrogen, (2) that the properties of the stars are very sensitive to this very small amount of hydrogen, and (3) that consequently this structure explains many of the general properties of the subclasses.

Smith, L. F.↗
NASA NTRS1987

The chromospheres and coronae of five G-K main-sequence stars

Previous data and high and low dispersion IUE observations of Chi 1 Ori, Alpha Cen A, Xi Boo A, Alpha Cen B, and Epsilon Eri are used to model the atmospheres of these stars from the high chromosphere to the corona. The energy lost by radiation and transferred by thermal conduction is investigated to establish the heating requirements, and results similar to those found for the solar atmosphere are found. The observed emission measurement distribution below 100,000 K can be described by a model in which Alfven wave energy input, observed through nonthermal line broadening, is balanced by radiation losses. Comparison of the coronal, transition region, and chromospheric pressures shows scaling relations which are compatible with previous flux correlations.

Jordan, C.↗
NASA NTRS2011

Zero-Copy Objects System

Zero-Copy Objects System software enables application data to be encapsulated in layers of communication protocol without being copied. Indirect referencing enables application source data, either in memory or in a file, to be encapsulated in place within an unlimited number of protocol headers and/or trailers. Zero-copy objects (ZCOs) are abstract data access representations designed to minimize I/O (input/output) in the encapsulation of application source data within one or more layers of communication protocol structure. They are constructed within the heap space of a Simple Data Recorder (SDR) data store to which all participating layers of the stack must have access. Each ZCO contains general information enabling access to the core source data object (an item of application data), together with (a) a linked list of zero or more specific extents that reference portions of this source data object, and (b) linked lists of protocol header and trailer capsules. The concatenation of the headers (in ascending stack sequence), the source data object extents, and the trailers (in descending stack sequence) constitute the transmitted data object constructed from the ZCO. This scheme enables a source data object to be encapsulated in a succession of protocol layers without ever having to be copied from a buffer at one layer of the protocol stack to an encapsulating buffer at a lower layer of the stack. For large source data objects, the savings in copy time and reduction in memory consumption may be considerable.

Burleigh, Scott C.↗
NASA NTRS2000

Inlet Unstart Propulsion Integration Wind Tunnel Test Program Completed for High-Speed Civil Transport

One of the propulsion system concepts to be considered for the High-Speed Civil Transport (HSCT) is an underwing, dual-propulsion, pod-per-wing installation. Adverse transient phenomena such as engine compressor stall and inlet unstart could severely degrade the performance of one of these propulsion pods. The subsequent loss of thrust and increased drag could cause aircraft stability and control problems that could lead to a catastrophic accident if countermeasures are not in place to anticipate and control these detrimental transient events. Aircraft system engineers must understand what happens during an engine compressor stall and inlet unstart so that they can design effective control systems to avoid and/or alleviate the effects of a propulsion pod engine compressor stall and inlet unstart. The objective of the Inlet Unstart Propulsion Airframe Integration test program was to assess the underwing flow field of a High-Speed Civil Transport propulsion system during an engine compressor stall and subsequent inlet unstart. Experimental research testing was conducted in the 10- by 10-Foot Supersonic Wind Tunnel at the NASA Glenn Research Center at Lewis Field. The representative propulsion pod consisted of a two-dimensional, bifurcated inlet mated to a live turbojet engine. The propulsion pod was mounted below a large flat plate that acted as a wing simulator. Because of the plate s long length (nominally 10-ft wide by 18-ft long), realistic boundary layers could form at the inlet cowl plane. Transient instrumentation was used to document the aerodynamic flow-field conditions during an unstart sequence. Acquiring these data was a significant technical challenge because a typical unstart sequence disrupts the local flow field for about only 50 msec. Flow surface information was acquired via static pressure taps installed in the wing simulator, and intrusive pressure probes were used to acquire flow-field information. These data were extensively analyzed to determine the impact of the unstart transient on the surrounding flow field. This wind tunnel test program was a success, and for the first time, researchers acquired flow-field aerodynamic data during a supersonic propulsion system engine compressor stall and inlet unstart sequence. In addition to obtaining flow-field pressure data, Glenn researchers determined other properties such as the transient flow angle and Mach number. Data are still being reduced, and a comprehensive final report will be released during calendar year 2000.

Porro, A. Robert↗
NASA NTRS1976

Terrestrial bodies orbiter, LUNAR - A system for detailed global measurements of a planet's properties

The NASA Lunar Polar Orbiter, to be launched by a Delta vehicle in 1980, is designed to perform a global exploration of such moon properties as the gravity field, figure, and surface composition, as well as a lunar resource survey. The paper reviews the mission, spacecraft, and data system concepts in terms of baseline mission sequence, choice of orbits, spacecraft configuration requirements, mission sequence requirements and data system and operations. Scientific experiments planned for the Orbiter mission include geophysical altimetry and gravity experiments, heat flow experiment, magnetic field experiments, measurements of the moon's natural gamma-ray spectrum, X-ray fluorescence of lunar surface materials, sunlight reflectance spectroscopy, and spectro-stereo imaging. Characteristics of instruments designed for use in these investigations are examined. Through the use of advanced sensors and data-system techniques, coupled with well-developed spacecraft systems, the mission promises to return a very large quantity and variety of lunar data at a cost comparable with that of simpler missions in the past.

Burke, J. D.↗
NASA NTRS2022

GRC MILab Software: Quick Start Guide

This document provides detailed installation and operating instructions for the GRC MILab Excel Add-In software developed at the NASA Glenn Research Center. The software described has been implemented to facilitate the process of importing into Microsoft Excel and analyzing materials test data from a wide range of materials tests. All resulting data is then ready for automated upload to the relevant table of the GRC Materials Intelligence (MI) database. This new software represents an update to the original MILab software developed by Granta Design Ltd.—a company specializing in materials software, data, and databases—for members of the Materials Data Management Consortium (MDMC), a collaboration between Granta, ASM International, NASA Glenn, and several other materials-oriented corporations and government agencies in the aerospace and defense industries. The updated software consists of the addition of two test type modules, the Generic and Generic Cyclic modules, with both representing a generalization of the original software. The Generic module supports the import and analysis of multiaxial data from any sequence of tensile, compression, relaxation, and/or creep test stages; and the Generic Cyclic module expands the functionality to include repeated sequences during cyclic testing. During processing, all imported data and analysis results are formatted by the software so as to be ready for immediate automated upload to the MI database, ensuring minimal overhead on the part of the user and access to persistent and reliable data for all relevant personnel.

Quick Start Guide↗
NASA NTRS1990

Neuromorphic learning of continuous-valued mappings from noise-corrupted data. Application to real-time adaptive control

The ability of feed-forward neural network architectures to learn continuous valued mappings in the presence of noise was demonstrated in relation to parameter identification and real-time adaptive control applications. An error function was introduced to help optimize parameter values such as number of training iterations, observation time, sampling rate, and scaling of the control signal. The learning performance depended essentially on the degree of embodiment of the control law in the training data set and on the degree of uniformity of the probability distribution function of the data that are presented to the net during sequence. When a control law was corrupted by noise, the fluctuations of the training data biased the probability distribution function of the training data sequence. Only if the noise contamination is minimized and the degree of embodiment of the control law is maximized, can a neural net develop a good representation of the mapping and be used as a neurocontroller. A multilayer net was trained with back-error-propagation to control a cart-pole system for linear and nonlinear control laws in the presence of data processing noise and measurement noise. The neurocontroller exhibited noise-filtering properties and was found to operate more smoothly than the teacher in the presence of measurement noise.

Troudet, Terry↗
NASA NTRS1972

Rare gas studies of the galactic cosmic ray irradiation history of lunar rocks.

Average irradiation depths and exposure ages of Tranquillity Base rocks are computed on the basis of eight analyses of the five noble gases in whole rock samples and lunar separates from lunar rocks, in conjunction with available literature data. Correlated variations in He-3/Ne-21 and Ar-38/Ne-21 reflect shielding differences. This correlation cannot be explained by diffusion losses, even though evidence for gas loss is obtained from mineral separate data. A qualitative shielding sequence is constructed which agrees reasonably well with the sequence based on Gd isotopic data.

Huneke, J. C.↗
NASA NTRS2000

Testing the BUNDLE Experiment for Microgravity Disturbance Characterization

A primary objective of the International Space Station is to provide a premier facility for microgravity research. There are many disturbances on board the Station that can disturb the quality of the microgravity environment, including disturbances caused by both system and payload hardware. Disturbances within experiments themselves can also affect the quality of their own environment. The primary functions of the Bridgman Unidirectional Dendrites in Liquids Experiment (BUNDLE) are to melt, directionally solidify, and perform in-situ quench of metallic alloys, providing data to aid in understanding the effects of the microgravity environment on the characteristics of these processed metals. Quenching of the samples in the BUNDLE furnace is accomplished by rapidly introducing high pressure helium into the furnace chamber. This type of quench will induce sample vibrations which may be large enough to adversely affect sample quality. The primary objective of the test described in this presentation was to determine the acceleration imparted on the BUNDLE sample during helium quench. From this information, the science community can better assess whether this method of quench will allow them to obtain the data they need. Utilizing breadboard hardware, the sample quench sequence was conducted. Data was collected from accelerometers located on the breadboard hardware and inside the sample cartridge. The test data indicated that the maximum acceleration achieved by the sample was 0.325 g, which is much higher than the desired microgravity (10(exp -6) g) environment. However, this acceleration level occurred over a time period of less than 0.1 second. Because this time period is so short, there should be no detrimental effects to dendrite growth. This result was consistent with the observations of the experiment scientists, who are satisfied with the results of previous dendrite growth in this breadboard unit.

Gattis, Christy↗
DOE OSTI2026

Analysis of genomic signatures associated with Variovorax endosphere colonization

This repository contains the analysis code and supporting datasets associated with the study “Genomic signatures in Variovorax enabling colonization of the Populus endosphere.” Beals DG, Carper DL, Hochanadel LH, Jawdy SS, Klingeman DM, Piatkowski BT, Weston DJ, Doktycz MJ, Pelletier DA. 2026. Genomic signatures in Variovorax enabling colonization of the Populus endosphere. mSystems 11:e01605-25. https://doi.org/10.1128/msystems.01605-25 The scripts are organized sequentially (01–07) and document the workflows used for: Sequence-read alignment and feature counting Orthogroup and KEGG Ortholog annotation Count normalization Statistical analysis and aggregation Generation of manuscript figures and tables Repository contents The uncompressed files are the finalized, formatted datasets used to generate the figures and tables reported in the study, including the supplemental CSV files referenced in the manuscript. The accompanying ZIP archive contains the complete codebase and example data_input/ and data_output/ directories illustrating the organization and execution of the analytical workflow. Individual scripts identify the corresponding manuscript analyses and figure panels. Raw sequencing data Raw sequencing reads are available through the NCBI Sequence Read Archive under BioProject accession PRJNA1322484.

Beals, Delaney [ORNL] (ORCID:0000000306274574)↗
NASA NTRS1982

A high speed implementation of the random decrement algorithm

The algorithm is useful for measuring net system damping levels in stochastic processes and for the development of equivalent linearized system response models. The algorithm works by summing together all subrecords which occur after predefined threshold level is crossed. The random decrement signature is normally developed by scanning stored data and adding subrecords together. The high speed implementation of the random decrement algorithm exploits the digital character of sampled data and uses fixed record lengths of 2(n) samples to greatly speed up the process. The contributions to the random decrement signature of each data point was calculated only once and in the same sequence as the data were taken. A hardware implementation of the algorithm using random logic is diagrammed and the process is shown to be limited only by the record size and the threshold crossing frequency of the sampled data. With a hardware cycle time of 200 ns and 1024 point signature, a threshold crossing frequency of 5000 Hertz can be processed and a stably averaged signature presented in real time.

Kiraly, L. J.↗
NASA NTRS1983

A high-speed implementation of the random decrement algorithm

The algorithm is useful for measuring net system damping levels in stochastic processes and for the development of equivalent linearized system response models. The algorithm works by summing together all subrecords which occur after predefined threshold level is crossed. The random decrement signature is normally developed by scanning stored data and adding subrecords together. The high speed implementation of the random decrement algorithm exploits the digital character of sampled data and uses fixed record lengths of 2(n) samples to greatly speed up the process. The contributions to the random decrement signature of each data point was calculated only once and in the same sequence as the data were taken. A hardware implementation of the algorithm using random logic is diagrammed and the process is shown to be limited only by the record size and the threshold crossing frequency of the sampled data. With a hardware cycle time of 200 ns and 1024 point signature, a threshold crossing frequency of 5000 Hertz can be processed and a stably averaged signature presented in real time.

Kiraly, L. J.↗
DOE OSTI2024

CrossMP: Enabling Cross-Modality Translation between Single-Cell RNA-Seq and Single-Cell ATAC-Seq through Web-Based Portal

In recent years, there has been a growing interest in profiling multiomic modalities within individual cells simultaneously. One such example is integrating combined single-cell RNA sequencing (scRNA-seq) data and single-cell transposase-accessible chromatin sequencing (scATAC-seq) data. Integrated analysis of diverse modalities has helped researchers make more accurate predictions and gain a more comprehensive understanding than with single-modality analysis. However, generating such multimodal data is technically challenging and expensive, leading to limited availability of single-cell co-assay data. Here, we propose a model for cross-modal prediction between the transcriptome and chromatin profiles in single cells. Our model is based on a deep neural network architecture that learns the latent representations from the source modality and then predicts the target modality. It demonstrates reliable performance in accurately translating between these modalities across multiple paired human scATAC-seq and scRNA-seq datasets. Additionally, we developed CrossMP, a web-based portal allowing researchers to upload their single-cell modality data through an interactive web interface and predict the other type of modality data, using high-performance computing resources plugged at the backend.

59 BASIC BIOLOGICAL SCIENCES↗
NASA NTRS1992

Protein sequences and redox titrations indicate that the electron acceptors in reaction centers from heliobacteria are similar to Photosystem I

Photosynthetic reaction centers isolated from Heliobacillus mobilis exhibit a single major protein on SDS-PAGE of 47 000 Mr. Attempts to sequence the reaction center polypeptide indicated that the N-terminus is blocked. After enzymatic and chemical cleavage, four peptide fragments were sequenced from the Heliobacillus mobilis apoprotein. Only one of these sequences showed significant specific similarity to any of the protein and deduced protein sequences in the GenBank data base. This fragment is identical with 56% of the residues, including both cysteines, found in highly conserved region that is proposed to bind iron-sulfur center Fx in the Photosystem I reaction center peptide that is the psaB gene product. The similarity to the psaA gene product in this region is 48%. Redox titrations of laser-flash-induced photobleaching with millisecond decay kinetics on isolated reaction centers from Heliobacterium gestii indicate a midpoint potential of -414 mV with n = 2 titration behavior. In membranes, the behavior is intermediate between n = 1 and n = 2, and the apparent midpoint potential is -444 mV. This is compared to the behavior in Photosystem I, where the intermediate electron acceptor A1, thought to be a phylloquinone molecule, has been proposed to undergo a double reduction at low redox potentials in the presence of viologen redox mediators. These results strongly suggest that the acceptor side electron transfer system in reaction centers from heliobacteria is indeed analogous to that found in Photosystem I. The sequence similarities indicate that the divergence of the heliobacteria from the Photosystem I line occurred before the gene duplication and subsequent divergence that lead to the heterodimeric protein core of the Photosystem I reaction center.

NASA Discipline Number 52-30↗
NASA NTRS1984

Empirical studies of upper atmospheric species

The first month of spin-scan ozone imaging (SOI) data (October 1981) was processed and compared with total ozone mapping spectrometer and ground based data. Short term variations in the ozone field have been revealed using animated sequences of SOI data. High correlations were observed between SOI ozone and upper tropospheric meteorological data. The relationship between ozone and temperature in the stratosphere was investigated by examining Nimbus 4 backscattered ultraviolet ozone and selective chopper radiometer temperature measurements as well as solar Nimbus 7 solar backscattered ultraviolet ozone and stratospheric and mesospheric sounder temperature measurements. Results from these ozone temperature studies were compared with calculations from theoretical 2-D models. All of the lims infrared monitor of the stratosphere data was processed at 10 pressure levels and correlations between various species have been performed. The Venus Atmospheric Drag model was modified taking into account recent investigations on the Venus thermosphere and the resulting model was considered for incorporation into the Venus International Reference Atmosphere.

Nicholson, J.↗
NASA NTRS1988

Spectral class distribution of circumstellar material in main-sequence stars

A detailed statistical evaluation of IRAS survey data of main-sequence stars within 25 pc indicates that the presence of cool shells around A, F, and G main-sequence stars is the rule, rather than the exception. While luminosity bias favors A and F stars, the typical G star still appears to have almost three orders of magnitude more excess than the excess of the solar system due to known zodiacal dust and all planets combined. The Vega effect is thus not restricted to stars of particularly young age. The finding that the 'archetypical' solar system appears to have much less far-IR excess than the majority of G stars supports a speculation that the sun could have a cloud of cold particles beyond the outer planets, undetected by IRAS viewing from earth.

Aumann, H. H.↗