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At least 541 records · Page 30

Variable length data formats

The purpose of this paper is to discuss a number of variable length floating point and integer formats and to give the various advantages and disadvantages of their use. Often it is known in advance that a given integer will not exceed a certain magnitude or that a particular floating point number is accurate to only 'n' places of accuracy. Faced with this, it is good engineering to choose variable length floating point and integer formats which require the least amount of hardware or the minimum amount of software or which have some other dominant advantage. The formats discussed have the advantage that length change algorithms are invariant with respect to data types (unsigned, signed, floating point, integers, and complex numbers). The STARAN associative array processor, which uses a completely variable fixed point and floating point formats, is described.

Brakefield, J. C.↗

Modeling of Solar Concentrators

Algorithm developed for predicting power output, uniformity of intensity and operating temperature of concentrator-enhanced photovoltaic solar cell arrays. Optimum values for parameters such as reflector geometry found prior to constructing scale models for testing.

Rockey, D. E.↗

A VLSI Processor Engine to Support Calculation of the Vector Wave Equation

The development of a VLSI processor engine tailored to support computation of the near-field vector wave equation (VWE) is presented. Calculation of the near field is essential for evaluation of the electromagnetic fields generated by a complex radiating structure. The processor engine presented is optimized such that it takes advantage of the extensive parallelism inherent in the computational algorithm. The utilization of very large scale integration (VLSI) circuit technology and a customized reduced instruction set computer (RISC) architecture support development of a system of these processor engines, each of which is capable of performing the VWE algorithm calculation. By taking maximum advantage of the parallelism present in the calculation and dividing the problem among an array of these processor engines, the calculation can be computed in a realistic time frame.

J W Degroat↗

High accuracy optical rate sensor

Optical rate sensors, in particular CCD arrays, will be used on Space Station Freedom to track stars in order to provide inertial attitude reference. An algorithm to provide attitude rate information by directly manipulating the sensor pixel intensity output is presented. The star image produced by a sensor in the laboratory is modeled. Simulated, moving star images are generated, and the algorithm is applied to this data for a star moving at a constant rate. The algorithm produces accurate derived rate of the above data. A step rate change requires two frames for the output of the algorithm to accurately reflect the new rate. When zero mean Gaussian noise with a standard deviation of 5 is added to the simulated data of a star image moving at a constant rate, the algorithm derives the rate with an error of 1.9 percent at a rate of 1.28 pixels per frame.

Uhde-Lacovara, J.↗

Application of a directed search to global steering of single gimballed CMGs

A guided depth-first search that manages null motion about torque-producing trajectories calculated with a singularity-robust (SR) inverse is proposed as a practical feedforward steering law that can globally avoid (or minimize the impact of) singular states in minimally-redundant single gimballed CMG systems. Cost and heuristic functions are defined to guide the search procedure in improving CMG trajectories. On-orbit implementation of the steering law is proposed as an extension to momentum management algorithms. A set of simulation examples is presented, illustrating the search performance for a 4-CMG pyramid-mounted array. Sensitivities of feedforward gimbal trajectories are examined in the presence of unmodeled disturbances, and techniques are proposed for avoiding excessive divergence.

Paradiso, Joseph A.↗

Supercomputing 2002: NAS Demo Abstracts

The hyperwall is a new concept in visual supercomputing, conceived and developed by the NAS Exploratory Computing Group. The hyperwall will allow simultaneous and coordinated visualization and interaction of an array of processes, such as a the computations of a parameter study or the parallel evolutions of a genetic algorithm population. Making over 65 million pixels available to the user, the hyperwall will enable and elicit qualitatively new ways of leveraging computers to accomplish science. It is currently still unclear whether we will be able to transport the hyperwall to SC02. The crucial display frame still has not been completed by the metal fabrication shop, although they promised an August delivery. Also, we are still working the fragile node issue, which may require transplantation of the compute nodes from the present 2U cases into 3U cases. This modification will increase the present 3-rack configuration to 5 racks.

Parks, John↗

Lunar Reconnaissance Orbiter (LRO) Sun Safe Mode

The Lunar Reconnaissance Orbiter (LRO), a spacecraft designed and built at the National Aeronautics and Space Administration s (NASA) Goddard Space Flight Center (GSFC) in Greenbelt, MD, was launched on June 18, 2009 from Cape Canaveral. It is currently in orbit about the Moon taking detailed science measurements and providing a highly accurate mapping of the suface in preparation for the future return of astronauts to a permanent moon base. Onboard the spacecraft is a complex set of algorithms designed by the attitude control engineers at GSFC to control the pointig for all operational events, including anomalies that require the spacecraft to be put into a well known attitude configuration for a sufficiently long duration to allow for the investigation and correction of the anomaly. GSFC level requirements state that each spacecraft s control system design must include a configuration for this pointing and lso be able to maintain a thermally safe and power positive attitude. This stable control algorithm for anomalous events is commonly referred to as the safe mode and consists of control logic thatwill put the spacecraft in this safe configuration defined by the spacecraft s hardware, power and environment capabilities and limitations. The LRO Sun Safe mode consists of a coarse sun-pointing set of algorithms that puts the spacecraft into this thermally safe and power positive attitude and can be achieved wihin a required amount of time from any initial attitude, provided that the system momentum is within the momentum capability of the reaction wheels. On LRO the Sun Safe mode makes use of coarse sun sensors (CSS), an inertial reference unit (IRU) and reaction wheels (RW) to slew the spacecraft to a solar inertial pointing. The CSS and reaction wheels have some level of redundancy because of their numbers. However, the IRU is a single-point-failure piece of hardware. Without the rate information provided by the IRU, the Sun Safe control algorithms could not maintain the required pointing, so a sub-mode of the Sun Safe mode that does not use the IRU was designed. This submode, referred to as the Sun Safe Gyroless control mode, consists of an algorithm that estimates rate information from the CSS and the RW measurements. RW momentum information is used to estimate the body rate parallel to the target sunline, which CSS alone would not be able to observe. Sun Safe can be autonomously, or via ground command, entered from any other control mode and in the event the IRU is not providing rate information, the control mode is switched to the gyroless submode. This paper looks at the design of the Sun Safe modes and discusses the constraints placed on the algorithm and how the mode wored around these constraints. Items of particular interest include CSS placement on the Solar Array (SA) and its implications to design, estimation of body rate information for the Sun Safe Gyroless control mode, and the effect of solar eclipse on each of the Sun Safe modes. Placing CSS on the SA was necessary for the means to put the Sun along the targeted sun-line, nominally normal to the SA panels, for all operational considerations. This had design implications for determining a sun vector during normal SA operations, if one or both gimbals become inoperable and when the SA is in a stowed configuration. The ability of body rate estimation in Sun Safe Gyroless not only uses CSS sun vector data but requires RW momentum measuremens to estimate rates parallel to the sun-line. LRO encounters solar eclipses of some length for most of its orbits about the Moon. With the lack of CSS measurement data a design was implemented in both Sun Safe and Sun Safe Gyroless, they differ because of having or not having IRU measurement data, to carry the spacecraft through these eclipse periods. This paper also includes some discussion of sun avoidance and how it affected design decisions during nominal and eclipse perids for each of the Sun Safe modes.

Garrick, Joseph↗

Parallel computing strategies for block multigrid implicit solution of the Euler equations

A multigrid diagonal implicit algorithm has been developed to solve the three-dimensional Euler equations of inviscid compressible flow on block-structured grids. An improved method of advancing the multigrid cycle has been examined with respect to convergence rates, accuracy, and efficiency. In this method, the multigrid cycle is advanced independently in each of the blocks, and the information exchange between the blocks is done using buffer arrays, allowing for the asynchronous updating of interface boundary conditions. This updating scheme is used to eliminate the convergence problems found in a previous implementation of the algorithm while retaining its potential for efficient parallel execution. Results are computed for transonic flows past wings and include pressure distributions to verify the accuracy of the scheme and convergence histories to demonstrate the efficiency of the method. Efficiencies that were obtained using a modest number of processors in parallel are also presented and discussed.

Yadlin, Yoram↗

Effect of Time Window and Spectral Measurement Options on Empirical Green’s Function Analysis Using DAS Array and Seismic Stations

The recorded seismic waveform is a convolution of event source term, path term, and station term. Removing high-frequency attenuation due to path effect is a challenging problem. Empirical Green’s function (EGF) method uses nearly collocated small earthquakes to correct the path and station terms for larger events recorded at the same station. However, this method is subject to variability due to many factors. Here, we focus on three events that were well recorded by the seismic network and a rapid response distributed acoustic sensing (DAS) array. Using a suite of high-quality EGF events, we assess the influence of time window, spectral measurement options, and types of data on the spectral ratio and relative source time function (RSTF) results. Increased number of tapers (from 2 to 16) tends to increase the measured corner frequency and reduce the source complexity. Extended long time window (e.g., 30 s) tends to produce larger variability of corner frequency. The multitaper algorithm that simultaneously optimizes both target and EGF spectra produces the most stable corner-frequency measurements. The stacked spectral ratio and RSTF from the DAS array are more stable than two nearby seismic stations, and are comparable to stacked results from the seismic network, suggesting that DAS array has strong potential in source characterization.

58 GEOSCIENCES↗

Real-time nuclear activation detectors for measuring neutron angular distributions at the National Ignition Facility (invited)

The Real Time Nuclear Activation Detector (RTNAD) array at NIF measures the distribution of 14 MeV neutrons emitted by deuterium-tritium (DT) fueled inertial confinement fusion implosions. The uniformity of the neutron distribution is an important indication of implosion symmetry and DT shell integrity. The array consists of 48 LaBr 3 (Ce) crystal gamma-ray spectrometers mounted outside the NIF target chamber, which continuously monitor the slow decay of the 909 keV gamma-ray line from activated 89 Zr located in Zr cups surrounding each crystal. The measured decay rate dramatically increases during a DT implosion in proportion to the number of 14 MeV neutrons striking each Zr cup. The neutrons produce activated 89 Zr through an (n, 2n) reaction on 90 Zr, which is insensitive to low energy neutrons. The neutron flux along the detector line-of-sight at shot time is determined by extrapolating the fitted 909 keV decay curve back to shot time. Automatic analysis algorithms were developed to handle the non-stop data stream. The large number of detectors and the high statistical accuracy of the array enable the spherical harmonic modes of the neutron angular distribution to be measured up to L ≤ 4 to provide a better understanding of implosion dynamics. In addition, these data combined with measurements of the down-scattered neutrons can be used to derive fuel areal density distributions. This paper will describe the RTNAD hardware and analysis procedures.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

A novel VLSI processor architecture for supercomputing arrays

Design of the processor element for general purpose massively parallel supercomputing arrays is highly complex and cost ineffective. To overcome this, the architecture and organization of the functional units of the processor element should be such as to suit the diverse computational structures and simplify mapping of complex communication structures of different classes of algorithms. This demands that the computation and communication structures of different class of algorithms be unified. While unifying the different communication structures is a difficult process, analysis of a wide class of algorithms reveals that their computation structures can be expressed in terms of basic IP,IP,OP,CM,R,SM, and MAA operations. The execution of these operations is unified on the PAcube macro-cell array. Based on this PAcube macro-cell array, we present a novel processor element called the GIPOP processor, which has dedicated functional units to perform the above operations. The architecture and organization of these functional units are such to satisfy the two important criteria mentioned above. The structure of the macro-cell and the unification process has led to a very regular and simpler design of the GIPOP processor. The production cost of the GIPOP processor is drastically reduced as it is designed on high performance mask programmable PAcube arrays.

Venkateswaran, N.↗

Parallel asynchronous systems and image processing algorithms

A new hardware approach to implementation of image processing algorithms is described. The approach is based on silicon devices which would permit an independent analog processing channel to be dedicated to evey pixel. A laminar architecture consisting of a stack of planar arrays of the device would form a two-dimensional array processor with a 2-D array of inputs located directly behind a focal plane detector array. A 2-D image data stream would propagate in neuronlike asynchronous pulse coded form through the laminar processor. Such systems would integrate image acquisition and image processing. Acquisition and processing would be performed concurrently as in natural vision systems. The research is aimed at implementation of algorithms, such as the intensity dependent summation algorithm and pyramid processing structures, which are motivated by the operation of natural vision systems. Implementation of natural vision algorithms would benefit from the use of neuronlike information coding and the laminar, 2-D parallel, vision system type architecture. Besides providing a neural network framework for implementation of natural vision algorithms, a 2-D parallel approach could eliminate the serial bottleneck of conventional processing systems. Conversion to serial format would occur only after raw intensity data has been substantially processed. An interesting challenge arises from the fact that the mathematical formulation of natural vision algorithms does not specify the means of implementation, so that hardware implementation poses intriguing questions involving vision science.

Coon, D. D.↗

The factorization of large composite numbers on the MPP

The continued fraction method for factoring large integers (CFRAC) was an ideal algorithm to be implemented on a massively parallel computer such as the Massively Parallel Processor (MPP). After much effort, the first 60 digit number was factored on the MPP using about 6 1/2 hours of array time. Although this result added about 10 digits to the size number that could be factored using CFRAC on a serial machine, it was already badly beaten by the implementation of Davis and Holdridge on the CRAY-1 using the quadratic sieve, an algorithm which is clearly superior to CFRAC for large numbers. An algorithm is illustrated which is ideally suited to the single instruction multiple data (SIMD) massively parallel architecture and some of the modifications which were needed in order to make the parallel implementation effective and efficient are described.

Mckurdy, Kathy J.↗

K-space algorithmic reconstruction (KAREN): a robust statistical methodology to separate Bragg and diffuse scattering

Diffuse scattering occurring in the Bragg diffraction pattern of a long-range-ordered structure represents local deviation from the governing regular lattice. However, interpreting the real-space structure from the diffraction pattern presents a significant challenge because of the dramatic difference in intensity between the Bragg and diffuse components of the total scattering function. In contrast to the sharp Bragg diffraction, the diffuse signal has generally been considered to be a weak expansive or continuous background signal. In this paper, using 1D and 2D models, it is demonstrated that diffuse scattering in fact consists of a complex array of high-frequency features that must not be averaged into a low-frequency background signal. To evaluate the actual diffuse scattering effectively, an algorithm has been developed that uses robust statistics and traditional signal processing techniques to identify Bragg peaks as signal outliers which can be removed from the overall scattering data and then replaced by statistically valid fill values. This method, described as a 'K-space algorithmic reconstruction' (KAREN), can identify Bragg reflections independent of prior knowledge of a system's unit cell. KAREN does not alter any data other than that in the immediate vicinity of the Bragg reflections, and reconstructs the diffuse component surrounding the Bragg peaks without introducing discontinuities which induce Fourier ripples or artifacts from underfilling `punched' voids. The KAREN algorithm for reconstructing diffuse scattering provides demonstrably better resolution than can be obtained from previously described punch-and-fill methods. The superior structural resolution obtained using the KAREN method is demonstrated by evaluating the complex ordered diffuse scattering observed from the neutron diffraction of a single plastic crystal of CBr 4 using pair distribution function analysis.

36 MATERIALS SCIENCE↗

Accelerators for Classical Molecular Dynamics Simulations of Biomolecules

Atomistic Molecular Dynamics (MD) simulations provide researchers the ability to model biomolecular structures such as proteins and their interactions with drug-like small molecules with greater spatiotemporal resolution than is otherwise possible using experimental methods. MD simulations are notoriously expensive computational endeavors that have traditionally required massive investment in specialized hardware to access biologically relevant spatiotemporal scales. Our goal is to summarize the fundamental algorithms that are employed in the literature to then highlight the challenges that have affected accelerator implementations in practice. We consider three broad categories of accelerators: Graphics Processing Units (GPUs), Field-Programmable Gate Arrays (FPGAs), and Application Specific Integrated Circuits (ASICs). These categories are comparatively studied to facilitate discussion of their relative trade-offs and to gain context for the current state of the art. We conclude by providing insights into the potential of emerging hardware platforms and algorithms for MD.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Predicting Instability and the Effect of Wind Loading on Single-Axis Trackers

As PV modules continue to trend toward larger, thinner, and more flexible forms they grow more susceptible to damage from dynamic wind loading. As a result, understanding the impact of wind on PV systems, particularly when mounted on solar-tracking hardware, and identifying robust, stable array layouts and stow strategies is becoming increasingly important for the PV community. In our ongoing DuraMAT project, we are developing an open-source software package, PVade (PV aerodynamic design engineering), to simulate the cascading fluid-structure interaction that occurs within solar-tracking arrays to enable researchers to test hardware, layout, and tracker control changes, leading to enhanced stability and a reduction in wind-driven damage. We will give an overview of the PVade software, highlighting recent user-interface and algorithm developments, before presenting the latest outcomes from our ongoing validation campaign in which we analyze and compare with experimental data obtained from a DuraMAT 1 project. From there, we will present simulated results from a larger, multi-row array and highlight relationships between varying tracker angles and stability as measured by different experimentally validated metrics.

fluid structure interaction↗

A Navier-Strokes Chimera Code on the Connection Machine CM-5: Design and Performance

We have implemented a three-dimensional compressible Navier-Stokes code on the Connection Machine CM-5. The code is set up for implicit time-stepping on single or multiple structured grids. For multiple grids and geometrically complex problems, we follow the 'chimera' approach, where flow data on one zone is interpolated onto another in the region of overlap. We will describe our design philosophy and give some timing results for the current code. A parallel machine like the CM-5 is well-suited for finite-difference methods on structured grids. The regular pattern of connections of a structured mesh maps well onto the architecture of the machine. So the first design choice, finite differences on a structured mesh, is natural. We use centered differences in space, with added artificial dissipation terms. When numerically solving the Navier-Stokes equations, there are liable to be some mesh cells near a solid body that are small in at least one direction. This mesh cell geometry can impose a very severe CFL (Courant-Friedrichs-Lewy) condition on the time step for explicit time-stepping methods. Thus, though explicit time-stepping is well-suited to the architecture of the machine, we have adopted implicit time-stepping. We have further taken the approximate factorization approach. This creates the need to solve large banded linear systems and creates the first possible barrier to an efficient algorithm. To overcome this first possible barrier we have considered two options. The first is just to solve the banded linear systems with data spread over the whole machine, using whatever fast method is available. This option is adequate for solving scalar tridiagonal systems, but for scalar pentadiagonal or block tridiagonal systems it is somewhat slower than desired. The second option is to 'transpose' the flow and geometry variables as part of the time-stepping process: Start with x-lines of data in-processor. Form explicit terms in x, then transpose so y-lines of data are in-processor. Form explicit terms in y, then transpose so z-lines are in processor. Form explicit terms in z, then solve linear systems in the z-direction. Transpose to the y-direction, then solve linear systems in the y-direction. Finally transpose to the x direction and solve linear systems in the x-direction. This strategy avoids inter-processor communication when differencing and solving linear systems, but requires a large amount of communication when doing the transposes. The transpose method is more efficient than the non-transpose strategy when dealing with scalar pentadiagonal or block tridiagonal systems. For handling geometrically complex problems the chimera strategy was adopted. For multiple zone cases we compute on each zone sequentially (using the whole parallel machine), then send the chimera interpolation data to a distributed data structure (array) laid out over the whole machine. This information transfer implies an irregular communication pattern, and is the second possible barrier to an efficient algorithm. We have implemented these ideas on the CM-5 using CMF (Connection Machine Fortran), a data parallel language which combines elements of Fortran 90 and certain extensions, and which bears a strong similarity to High Performance Fortran. We make use of the Connection Machine Scientific Software Library (CMSSL) for the linear solver and array transpose operations.

Jespersen, Dennis C.↗

Overcoming the field-of-view to diameter trade-off in microendoscopy via computational optrode-array microscopy

High-resolution microscopy of deep tissue with large field-of-view (FOV) is critical for elucidating organization of cellular structures in plant biology. Microscopy with an implanted probe offers an effective solution. However, there exists a fundamental trade-off between the FOV and probe diameter arising from aberrations inherent in conventional imaging optics (typically, FOV < 30% of diameter). Here, we demonstrate the use of microfabricated non-imaging probes (optrodes) that when combined with a trained machine-learning algorithm is able to achieve FOV of 1x to 5x the probe diameter. Further increase in FOV is achieved by using multiple optrodes in parallel. With a 1 × 2 optrode array, we demonstrate imaging of fluorescent beads (including 30 FPS video), stained plant stem sections and stained living stems. Our demonstration lays the foundation for fast, high-resolution microscopy with large FOV in deep tissue via microfabricated non-imaging probes and advanced machine learning.

59 BASIC BIOLOGICAL SCIENCES↗