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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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At least 541 records · Page 30
All sourcesNASA NTRSDOE OSTI
DOE OSTI2023

Deep Green Unannotated Protein Structures

The Deep Green list is based on the identification and curation of conserved unannotated proteins in three green lineage (Viridiplantae) model organisms; Arabidopsis thaliana, Chlamydomonas reinhardtii, and Setaria viridis. Preliminary characterization of Deep Green proteins and genes was done using various informatics tools and published data sets and is presented in Knoshaug, Sun, et al., 2023, submitted. The structures of these unannotated proteins were also predicted using AlphaFold (Jumper et al., 2021). The data deposited here are the AlphaFold structural predictions having the highest pLDDT score and thus identified as the best folded structure (ranked_0). These data enable others to do in-depth structural characterizations to aid in functional characterization leading to deeper understanding of plant biology. References: Jumper, J., Evans, R., Pritzel, A., Green, T., Figurnov, M., Ronneberger, O., Tunyasuvunakool, K., Bates, R., Žídek, A., Potapenko, A., Bridgland, A., Meyer, C., Kohl, S. A. A., Ballard, A. J., Cowie, A., Romera-Paredes, B., Nikolov, S., Jain, R., Adler, J., Back, T., Petersen, S., Reiman, D., Clancy, E., Zielinski, M., Steinegger, M., Pacholska, M., Berghammer, T., Bodenstein, S., Silver, D., Vinyals, O., Senior, A. W., Kavukcuoglu, K., Kohli, P. and Hassabis, D. (2021) Highly accurate protein structure prediction with AlphaFold. Nature, 596:583-589. Knoshaug, E. P., Sun, P., Nag, A., Nguyen, H., Mattoon, E. M., Zhang, N., Liu, J., Chen, C., Cheng, J., Zhang, R., St. John, P., and Umen, J. (submitted) Identification and preliminary characterization of conserved uncharacterized proteins from Chlamydomonas reinhardtii, Arabidopsis thaliana, and Setaria viridis.

09 BIOMASS FUELS↗
DOE OSTI2023

CRISPR/Cas9-based gene activation and base editing in Populus

The genus Populus has long been used for environmental, agroforestry and industrial applications worldwide. Today Populus is also recognized as a desirable crop for biofuel production and a model tree for physiological and ecological research. As such, various modern biotechnologies, including CRISPR/Cas9-based techniques, have been actively applied to Populus for genetic and genomic improvements for traits such as increased growth rate and tailored lignin composition. However, CRISPR/Cas9 has been primarily used as the active Cas9 form to create knockouts in the hybrid poplar clone “717-1B4” (P. tremula x P. alba clone INRA 717-1B4). Alternative CRISPR/Cas9-based technologies, e.g. those involving modified Cas9 for gene activation and base editing, have not been evaluated in most Populus species for their efficacy. Here we employed a deactivated Cas9 (dCas9)-based CRISPR activation (CRISPRa) technique to fine-tune the expression of two target genes, TPX2 and LecRLK-G which play important roles in plant growth and defense response, in hybrid poplar clone “717-1B4” and poplar clone “WV94” (P. deltoides “WV94”), respectively. We observed that CRISPRa resulted in 1.2-fold to 7.0-fold increase in target gene expression through transient expression in protoplasts and Agrobacterium-mediated stable transformation, demonstrating the effectiveness of dCas9-based CRISPRa system in Populus. In addition, we applied Cas9 nickase (nCas9)-based cytosine base editor (CBE) to precisely introduce premature stop codons via C-to-T conversion, with an efficiency of 13%–14%, in the target gene PLATZ which encodes a transcription factor involved in plant fungal pathogen response in hybrid poplar clone “717-1B4”. Overall, we showcase the successful application of CRISPR/Cas-based technologies in gene expression regulation and precise gene engineering in two Populus species, facilitating the adoption of emerging genome editing tools in woody species.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2022

Biomass sorghum production in Iowa, USA

This dataset includes field measurement and model simulation data from Josh Bendorf's (former MS student with Drs. VanLoocke & Heaton, ISU Dept. of Agronomy) thesis project focusing on the simulation of biomass sorghum ( Sorghum bicolor L. Moench) in the state of Iowa. Measured field data are provided in CSV file format for 2019 & 2020. Model output files are provided as NetCDF file format for the state of Iowa (1998-2007) & the larger US region (1969-2018).

Agricultural production systems simulation↗
DOE OSTI2026

The Global Spectra-Trait Initiative: A database of paired leaf spectroscopy and functional traits associated with leaf photosynthetic capacity

Accurate assessment of leaf functional traits is crucial for a diverse range of applications from crop phenotyping to parameterizing global climate models. Leaf reflectance spectroscopy offers a promising avenue to advance ecological and agricultural research by complementing traditional, time-consuming gas exchange measurements. However, the development of robust hyperspectral models for predicting leaf photosynthetic capacity and associated traits from reflectance data has been hindered by limited data availability across species and environments. Here we introduce the Global Spectra-Trait Initiative (GSTI), a collaborative repository of paired leaf hyperspectral and gas exchange measurements from diverse ecosystems. The GSTI repository currently encompasses over 7500 observations from 397 species and 41 sites gathered from 36 published and unpublished studies, thereby offering a key resource for developing and validating hyperspectral models of leaf photosynthetic capacity. The GSTI database is developed on GitHub (https://github.com/plantphys/gsti, last access: 4 January 2026) and published to ESS-DIVE https://doi.org/10.15485/2530733, Lamour et al., 2025). It includes gas exchange data, derived photosynthetic parameters, and key leaf traits often associated with traditional gas exchange measurements such as leaf mass per area and leaf elemental composition. By providing a standardized repository for data sharing and analysis, we present a critical step towards creating hyperspectral models for predicting photosynthetic traits and associated leaf traits for terrestrial plants.

Lamour, Julien [Université of Toulouse (France); U↗
NASA NTRS1974

The economic value of remote sensing of earth resources from space: An ERTS overview and the value of continuity of service. Volume 3: Intensive use of living resources, agriculture. Part 2: Distribution effects

The results of an investigation of the value of improving information for forecasting future crop harvests are described. A theoretical model is developed to calculate the value of increased speed of availablitiy of that information. The analysis of U.S. domestic wheat consumption was implemented. New estimates of a demand function for wheat and of a cost of storage function were involved, along with a Monte Carlo simulation for the wheat spot and future markets and a model of market determinations of wheat inventories. Results are shown to depend critically on the accuracy of current and proposed measurement techniques.

Bradford, D. F.↗
NASA NTRS1975

Separation of man-made and natural patterns in high-altitude imagery of agricultural areas

A nonstationary linear digital filter is designed and implemented which extracts the natural features from high-altitude imagery of agricultural areas. Essentially, from an original image a new image is created which displays information related to soil properties, drainage patterns, crop disease, and other natural phenomena, and contains no information about crop type or row spacing. A model is developed to express the recorded brightness in a narrow-band image in terms of man-made and natural contributions and which describes statistically the spatial properties of each. The form of the minimum mean-square error linear filter for estimation of the natural component of the scene is derived and a suboptimal filter is implemented. Nonstationarity of the two-dimensional random processes contained in the model requires a unique technique for deriving the optimum filter. Finally, the filter depends on knowledge of field boundaries. An algorithm for boundary location is proposed, discussed, and implemented.

Samulon, A. S.↗
DOE OSTI2026

Impacts of Year-to-Year Weather Variability and Inter-Panel Spacing on Crop Yields in a Massachusetts Agrivoltaics System

This presentation summarizes recently published work on agrivoltaic field data and irradiance modeling. The body of agrivoltaic field data is still growing, and crop responses to different solar configurations under different local climates are highly varied. We investigate the impact of adding spacing between adjacent solar panels in a fixed-tilt system to improve light diffusion to crops. For four crops (broccoli, peppers, kale, Swiss chard) grown across 3 years in an agrivoltaic system in Massachusetts, we found that only kale had a linearly increasing trend as the inter-panel spacing increased from 0.6 m to 1.5 m (2 ft to 5 ft). However, there were significant year-to-year differences in the yield of agrivoltaic versus control fields. Agrivoltaic and full sun fields produced equivalent yields in a hot, dry year, whereas the full-sun control beds produced more salable yield for all four crops in a warm, wet year. This demonstrates variability of agricultural outcomes and the need for more multi-year studies to ensure agrivoltaic impacts are not under- or overestimated.

14 SOLAR ENERGY↗
DOE OSTI2020

BEPAM Model Code and CABBI Simulation Results for "Assessing the Additional Carbon Savings with Biofuel"

This dataset consists of various input data that are used in the GAMS model. All the data are in the format of .inc which can be read within GAMS or Notepad. Main data sources include: acreage data (acre), crop budget data ($/acre), crop yield data (e.g. bushel/acre), Soil carbon sequestration data (KgCO2/ha/yr). Model details can be found in the "Assessing the Additional Carbon Savings with Biofuel" and GAMS model package. ## File Description (1) GAMS Model.zip: This includes all the input files and scripts for running the model (2) Table*.csv: These files include the data from the tables in the manuscript (3) Figure2_3_4.csv: This contains the data used to create the figures in the manuscript (4) BaselineResults.csv: This includes a summary of the model results. (5) SensitivityResults_*.csv: Model results from the various sensitivity analyses performed (6) LUC_emission.csv: land use change emissions by crop reporting district for changes of pasturelands to annual crops.

Anticipated baseline approach↗
NASA NTRS2023

Heat Stress to Jeopardize Crop Production in the US Corn Belt Based on Downscaled CMIP5 Projections

CONTEXT Global food security faces increasing challenges from the changing climate. Changes of agricultural output from some of the most productive regions such as the US Corn Belt can largely affect the world's food market. Developing predictive understanding of the agricultural risk of climate change and potential mitigation strategies is critical for the global food security. OBJECTIVE The objective of this study is to assess the responses of maize and soybean yield to projected climate changes in the Corn Belt, identify the shifting environment stressors on crop yield, and tackle potential climate adaptation strategies. METHODS We drive a process-based model, the Decision Support System for Agrotechnology Transfer, with high-resolution statistically downscaled and bias-corrected historical and future climates from ten CMIP5 models in the MACA-2 database. RESULTS AND CONCLUSIONS The multi-model ensemble mean suggests a 12% decrease of maize yield by mid-century and 40% by late century, with a high degree of model consensus in the direction of changes; for individual models, the projected decrease of maize yield by late century ranges from <5% to over 80%, with the worst crop outcome corresponding to the most sensitive climate models. Soybean yield is projected to increase by midcentury with a high degree of model consensus, but such consensus is lost by late century as some projections shift to significant decreases. Crop yield in the Corn Belt is currently limited by water stress, but is projected to be increasingly limited by heat stress as well after the midcentury. The mounting heat stress will drive the most productive zone for maize to shift from central to northern part of the Corn Belt, but the projected increase in the northern states cannot fully compensate for the decrease in the south, causing the total production to decrease if agricultural practice stays the same. Earlier planting can alleviate only a small fraction of the heat-induced crop loss in a warmer climate. Climate change will (at least partially) offset the yield boost caused by agricultural technology and intensification. SIGNIFICANCE This study advances our predictive understanding of crop yield responses to climate change, and suggests that a multitude of strategies will be needed to address the climate change challenges for the U.S. agriculture.

Crop yield↗
NASA NTRS1979

Growth stage estimation

Of the three candidate approaches to adjustment of the crop calendar to account for year-to-year weather differences, the Robertson triquadratic unit, a function of a nonlinear function of maximum and minimum temperature and day length, best described the rate of phenological development of wheat. The adjustable crop calendar (ACC) as implemented for LACIE is used to calculate the daily increment of development through six physiological stages of growth. Topics covered include dormancy modeling, the spring restart model, spring wheat starter model, winter starter model, winter wheat starter model, inclusion of the moisture variable, and display of crop stage estimation results. Assessment of the ACC accuracy over the period of LACIE operation indicates that the adjustable crop calendars used provided more accurate information than would have been available using historical norms. The models performed best under the conditions from which they were derived (Canadian spring wheat) and most poorly for the dwarf varieties and Southern Hemisphere applications.

Whitehead, V. S.↗
DOE OSTI2025

Predicting weather impacts on corn production in a data-limited region using a transfer learning approach

The stability of food supply and prices may depend more on annual changes in yields from year-to-year variability in weather than on longer-term average changes from changing climatic conditions. However, the absence of high-quality data on crop yields at fine spatial resolutions in many regions of the world makes it challenging to statistically model their response to interannual variability in weather patterns. Therefore, there is a need for empirical methods that can project annual crop yield changes even in limited data regions. Here, we propose a transfer learning algorithm that uses high spatial resolution data from one region to project yields in another region with more limited data. The goal of our work is to understand what data types can be beneficial for transferring learning from a source region to a very different target region with more limited data. We utilize Long Short-Term Memory to develop a transfer learning model that is trained on historical county-level corn yield in the United States and predicts district-level corn yield variations in India. Even using smaller amounts of data in India, simulating a data-scarce region, we achieve an average root mean square error of 0.48 bu acre−1 in predicting interannual yield variations. Using Shapley values to interpret results, we explore the contribution of the different weather parameters to interannual yield variability and find a larger influence of precipitation-related variables. Our study demonstrates the usefulness of this method for transferring models of weather impacts on crop yields trained on a data-rich country to one with more limited data. It suggests the potential of applying the transfer learning model to mitigate the need for extensive raw data globally.

Vishwakarma, Srishti [ORNL] (ORCID:000000031674419↗
DOE OSTI2026

Development of male-sterile lines of Setaria viridis to accelerate C 4 model plant genetics

Setaria viridis is a diploid C 4 grass in the Poaceae family, notable for its rapid life cycle of 6–8 weeks from sowing to seed—much shorter than the 4–5 months required by crops such as Zea mays and Sorghum bicolor . This fast growth makes S. viridis a valuable model for C 4 crop research. Genetic crosses are essential for studying gene function, but manual crossing is labor-intensive and time-consuming. Here, to address this, we developed a male-sterile line by targeting the S. viridis ortholog of Setaria italica NO POLLEN 1 ( SiNP1 ), which encodes a glucose–methanol–choline oxidoreductase required for pollen exine formation. Using Cas9 and TREX2 -mediated genome editing, we generated SiNP1 knockouts in both the S. viridis ME034V and A10.1 backgrounds that were fully male-sterile. Backcrossing T 0 male-sterile plants to ME034V wild-type followed by selfing yielded a stable BC 1 F 2 line homozygous for a 59 bp deletion in the S. viridis NO POLLEN 1 gene, easily genotyped by PCR and maintained by heterozygous siblings. Using this line, we developed a simple and efficient crossing protocol that eliminates the need for emasculation. This method enables a single person to perform up to 100 crosses per day—compared to 15 using traditional methods—and yields 20–32 F 1 hybrid seeds per panicle with 100% genetic purity. We also quantified pollen flow and outcrossing frequencies under greenhouse conditions to develop optimal bagging strategies and prevent unintended pollination. This resource accelerates genetic research in S. viridis , enhancing its utility as a premier C 4 model for mapping and functional genomics.

C4 research↗
NASA NTRS2010

Salience Assignment for Multiple-Instance Data and Its Application to Crop Yield Prediction

An algorithm was developed to generate crop yield predictions from orbital remote sensing observations, by analyzing thousands of pixels per county and the associated historical crop yield data for those counties. The algorithm determines which pixels contain which crop. Since each known yield value is associated with thousands of individual pixels, this is a multiple instance learning problem. Because individual crop growth is related to the resulting yield, this relationship has been leveraged to identify pixels that are individually related to corn, wheat, cotton, and soybean yield. Those that have the strongest relationship to a given crop s yield values are most likely to contain fields with that crop. Remote sensing time series data (a new observation every 8 days) was examined for each pixel, which contains information for that pixel s growth curve, peak greenness, and other relevant features. An alternating-projection (AP) technique was used to first estimate the "salience" of each pixel, with respect to the given target (crop yield), and then those estimates were used to build a regression model that relates input data (remote sensing observations) to the target. This is achieved by constructing an exemplar for each crop in each county that is a weighted average of all the pixels within the county; the pixels are weighted according to the salience values. The new regression model estimate then informs the next estimate of the salience values. By iterating between these two steps, the algorithm converges to a stable estimate of both the salience of each pixel and the regression model. The salience values indicate which pixels are most relevant to each crop under consideration.

Wagstaff, Kiri L.↗
NASA NTRS1980

Wheat forecast economics effect study

A model to assess the value of improved information regarding the inventories, productions, exports, and imports of crop on a worldwide basis is discussed. A previously proposed model is interpreted in a stochastic control setting and the underlying assumptions of the model are revealed. In solving the stochastic optimization problem, the Markov programming approach is much more powerful and exact as compared to the dynamic programming-simulation approach of the original model. The convergence of a dual variable Markov programming algorithm is shown to be fast and efficient. A computer program for the general model of multicountry-multiperiod is developed. As an example, the case of one country-two periods is treated and the results are presented in detail. A comparison with the original model results reveals certain interesting aspects of the algorithms and the dependence of the value of information on the incremental cost function.

Mehra, R. K.↗
NASA NTRSDate not supplied

Improving Simulation of Irrigation in a Global Land Surface Model

Studies have shown that irrigated agriculture has substantial effects on local to regional hydrologic and atmospheric processes. These effects include increased evapotranspiration and near surface humidity, decreased air and ground temperature, augmented downwind precipitation, enhanced recharge, depletion of source water stocks, and overall changes to the regional water budget. However, developers of global offline and coupled modeling systems have been slow to incorporate irrigation. This presentation will describe progress towards simulating irrigation worldwide in the Land Information System (LIS) and Global Land Data Assimilation System (GLDAS). We have developed and refined the ability to simulate sprinkler irrigation, furrow irrigation, paddy irrigation, and drip irrigation. We have reconciled multiple global and national irrigation, land cover, and crop type databases in an effort to (1) distinguish irrigated and rainfed agriculture, (2) simulate the proper distribution of crops (as sub-grid tiles) in each model grid pixel, and (3) apply the most likely irrigation method in each tile based on the crop type and country or state level information on the relative usage of sprinkler, flood, and drip irrigation. Using agricultural water withdrawal data, as available, for calibration and evaluation, we show that the implemented approach is promising but that much fine tuning remains to be done. In particular, irrigation model parameters that produce good results in one location often produce less satisfying results in others.

Matthew Rodell↗