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DOE OSTI2019

Enhancing materials property prediction by leveraging computational and experimental data using deep transfer learning

Abstract The current predictive modeling techniques applied to Density Functional Theory (DFT) computations have helped accelerate the process of materials discovery by providing significantly faster methods to scan materials candidates, thereby reducing the search space for future DFT computations and experiments. However, in addition to prediction error against DFT-computed properties, such predictive models also inherit the DFT-computation discrepancies against experimentally measured properties. To address this challenge, we demonstrate that using deep transfer learning, existing large DFT-computational data sets (such as the Open Quantum Materials Database (OQMD)) can be leveraged together with other smaller DFT-computed data sets as well as available experimental observations to build robust prediction models. We build a highly accurate model for predicting formation energy of materials from their compositions; using an experimental data set of $$1,643$$ 1 , 643 observations, the proposed approach yields a mean absolute error (MAE) of $$0.07$$ 0.07 eV/atom, which is significantly better than existing machine learning (ML) prediction modeling based on DFT computations and is comparable to the MAE of DFT-computation itself.

36 MATERIALS SCIENCE↗

DOE OSTI2019

Two-dimensional topological materials discovery by symmetry-indicator method

Two-dimensional (2D) topological materials (TMs) have attracted tremendous attention due to the promise of revolutionary devices with nondissipative electric or spin currents. Unfortunately, the scarcity of 2D TMs holds back the experimental realization of such devices. In this work, based on our recently developed, highly efficient TM discovery algorithm using symmetry indicators, we explore the possible 2D TMs in all nonmagnetic compounds in four recently proposed materials databases for possible 2D materials. We identify hundreds of 2D TM candidates, including 205 topological (crystalline) insulators and 299 topological semimetals. In particular, we highlight MoS, with a mirror Chern number of –4, as a possible experimental platform for studying the interaction-induced modification to the topological classification of materials. Here, our results winnow out the topologically interesting 2D materials from these databases and provide a TM gene pool for further experimental studies.

36 MATERIALS SCIENCE↗

DOE OSTI2019

Design and thermomechanical properties of a γ' precipitate-strengthened Ni-based superalloy with high entropy γ matrix

A novel Ni-based superalloy was designed with γ' precipitate strengthening, controlled γ/γ' lattice misfit and high configurational entropy of the γ matrix for improved high temperature performance up to 800 degrees C. The alloy contains nano-sized γ' precipitates, MC and other grain boundary carbides. Three variants of the alloy were fabricated using vacuum induction melting, a computational-based homogenization cycle for reducing solidification segregation, and thermomechanical processing steps of forging followed by hot rolling to produce plates from which ASTM standard test specimens were extracted. Tensile testing at room temperature and elevated temperatures up to 800 degrees C revealed superior yield stress when compared to Nimonic 105 with good tensile strength values. Furthermore, the three alloys are machinable with maximum stresses comparable to standard practices as determined using deformation mechanisms maps obtained from Gleeble testing and EBSD analysis. Due to the composition of the experimental alloys falling outside the typical range used to populate thermodynamic databases, differences in phase predictions and related temperatures were observed between the experiment and Thermo-Calc predictions. Here, the γ' forming elements Ti and Nb had a similar effect on the γ' precipitates and indirectly contributed to changing the entropy of the γ matrix. Based on the results of this study, these alloys have the potential for use at 800 degrees C in energy structural applications. Definitions related to this novel class of alloys are discussed.

36 MATERIALS SCIENCE↗

DOE OSTI2022

Reduced models for ETG transport in the tokamak pedestal

This paper reports on the development of reduced models for electron temperature gradient (ETG) driven transport in the pedestal. Model development is enabled by a set of 61 nonlinear gyrokinetic simulations with input parameters taken from pedestals in a broad range of experimental scenarios. The simulation data have been consolidated in a new database for gyrokinetic simulation data, the multiscale gyrokinetic database (MGKDB), facilitating the analysis. The modeling approach may be considered a generalization of the standard quasilinear mixing length procedure. The parameter η, the ratio of the density to temperature gradient scale length, emerges as the key parameter for formulating an effective saturation rule. With a single order-unity fitting coefficient, the model achieves an error of 15%. A similar model for ETG particle flux is also described. We also present simple algebraic expressions for the transport informed by an algorithm for symbolic regression.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

DOE OSTI2016

Automatic segmentation of the glenohumeral cartilages from magnetic resonance images

Purpose: Magnetic resonance (MR) imaging plays a key role in investigating early degenerative disorders and traumatic injuries of the glenohumeral cartilages. Subtle morphometric and biochemical changes of potential relevance to clinical diagnosis, treatment planning, and evaluation can be assessed from measurements derived from in vivo MR segmentation of the cartilages. However, segmentation of the glenohumeral cartilages, using approaches spanning manual to automated methods, is technically challenging, due to their thin, curved structure and overlapping intensities of surrounding tissues. Automatic segmentation of the glenohumeral cartilages from MR imaging is not at the same level compared to the weight-bearing knee and hip joint cartilages despite the potential applications with respect to clinical investigation of shoulder disorders. In this work, the authors present a fully automated segmentation method for the glenohumeral cartilages using MR images of healthy shoulders. Methods: The method involves automated segmentation of the humerus and scapula bones using 3D active shape models, the extraction of the expected bone–cartilage interface, and cartilage segmentation using a graph-based method. The cartilage segmentation uses localization, patient specific tissue estimation, and a model of the cartilage thickness variation. The accuracy of this method was experimentally validated using a leave-one-out scheme on a database of MR images acquired from 44 asymptomatic subjects with a true fast imaging with steady state precession sequence on a 3 T scanner (Siemens Trio) using a dedicated shoulder coil. The automated results were compared to manual segmentations from two experts (an experienced radiographer and an experienced musculoskeletal anatomist) using the Dice similarity coefficient (DSC) and mean absolute surface distance (MASD) metrics. Results: Accurate and precise bone segmentations were achieved with mean DSC of 0.98 and 0.93 for the humeral head and glenoid fossa, respectively. Mean DSC scores of 0.74 and 0.72 were obtained for the humeral and glenoid cartilage volumes, respectively. The manual interobserver reliability evaluated by DSC was 0.80 ± 0.03 and 0.76 ± 0.04 for the two cartilages, implying that the automated results were within an acceptable 10% difference. The MASD between the automatic and the corresponding manual cartilage segmentations was less than 0.4 mm (previous studies reported mean cartilage thickness of 1.3 mm). Conclusions: This work shows the feasibility of volumetric segmentation and separation of the glenohumeral cartilages from MR images. To their knowledge, this is the first fully automated algorithm for volumetric segmentation of the individual glenohumeral cartilages from MR images. The approach was validated against manual segmentations from experienced analysts. In future work, the approach will be validated on imaging datasets acquired with various MR contrasts in patients.

60 APPLIED LIFE SCIENCES↗

DOE OSTI2024

Initial Alloy 709 constitutive models for use with the ASME design by inelastic analysis and EPP+SMT design methods

This report details a preliminary inelastic constitutive model describing the behavior of Alloy 709. This model will serve two purposes: (1) integration into Nonmandatory Appendix HBB-Z of the ASME Boiler & Pressure Vessel Code Section III, Division 5 and (2) extrapolating cyclic test data to difficult to measure conditions for formulating improved creep-fatigue design methods. For both applications, the model must accurately capture the material behavior across a wide range of temperatures and a variety of test conditions, both monotonic and cyclic. For this purpose we adopt a universal model form under consideration to standardize the description of high temperature constitutive models in the ASME Code. This report briefly restates that model form and how we calibrate the model against the test data, summarizes the test database, and validates the final, trained model by comparison to the experimental tests.

36 MATERIALS SCIENCE↗

DOE OSTI2021

Photovoltaic Data Acquisition (PVDAQ) Public Datasets

The NREL PVDAQ is a large-scale time-series database containing system metadata and performance data from a variety of experimental PV sites and commercial public PV sites. The datasets are used to perform on-going performance and degradation analysis. Some of the sets can exhibit common elements that effect PV performance (e.g. soiling). The dataset consists of a series of files devoted to each of the systems and an associated set of metadata information that explains details about the system hardware and the site geo-location. Some system datasets also include environmental sensors that cover irradiance, temperatures, wind speeds, and precipitation at the site.

Array↗

NASA NTRS1987

Toward automatic finite element analysis

Two problems must be solved if the finite element method is to become a reliable and affordable blackbox engineering tool. Finite element meshes must be generated automatically from computer aided design databases and mesh analysis must be made self-adaptive. The experimental system described solves both problems in 2-D through spatial and analytical substructuring techniques that are now being extended into 3-D.

Kela, Ajay↗

NASA NTRS2001

Turbulence Modeling Workshop

Advances in turbulence modeling are needed in order to calculate high Reynolds number flows near the onset of separation and beyond. To this end, the participants in this workshop made the following recommendations. (1) A national/international database and standards for turbulence modeling assessment should be established. Existing experimental data sets should be reviewed and categorized. Advantage should be taken of other efforts already under-way, such as that of the European Research Community on Flow, Turbulence, and Combustion (ERCOFTAC) consortium. Carefully selected "unit" experiments will be needed, as well as advances in instrumentation, to fill the gaps in existing datasets. A high priority should be given to document existing turbulence model capabilities in a standard form, including numerical implementation issues such as grid quality and resolution. (2) NASA should support long-term research on Algebraic Stress Models and Reynolds Stress Models. The emphasis should be placed on improving the length-scale equation, since it is the least understood and is a key component of two-equation and higher models. Second priority should be given to the development of improved near-wall models. Direct Numerical Simulations (DNS) and Large Eddy Simulations (LES) would provide valuable guidance in developing and validating new Reynolds-averaged Navier-Stokes (RANS) models. Although not the focus of this workshop, DNS, LES, and hybrid methods currently represent viable approaches for analysis on a limited basis. Therefore, although computer limitations require the use of RANS methods for realistic configurations at high Reynolds number in the foreseeable future, a balanced effort in turbulence modeling development, validation, and implementation should include these approaches as well.

Rubinstein, R.↗

NASA NTRS2000

Chandra and XMM-Newton: Atomic Data Needs For X-ray Astronomy

With the launches of the Chandra X-ray Observatory and XM M-Newton, high resolution X-ray spectra of cosmic sources are broadening our understanding of the physical conditions, such as temperature, density, Ionization state, and elemental abundances. X-ray emitting astrophysical plasmas can be generally classified by their dominant ionization mechanism, either collisional ionization or X-ray photoionization. The atomic data needs are significantly different for these two cases; however, for both cases it is important that we identify robust and accurate diagnostics and that we verify completeness of the broadband models. We discuss the status of tile atomic data currently used in atomic databases for X-ray astronomy, in view of theoretical and experimental atomic physics considerations. We will also discuss the application of these models to new astrophysical data.

Brickhouse, Nancy↗

NASA NTRS2002

Aerodynamic Database Development for Mars Smart Lander Vehicle Configurations

An aerodynamic database has been generated for the Mars Smart Lander Shelf-All configuration using computational fluid dynamics (CFD) simulations. Three different CFD codes, USM3D and FELISA, based on unstructured grid technology and LAURA, an established and validated structured CFD code, were used. As part of this database development, the results for the Mars continuum were validated with experimental data and comparisons made where applicable. The validation of USM3D and LAURA with the Unitary experimental data, the use of intermediate LAURA check analyses, as well as the validation of FELISA with the Mach 6 CF(sub 4) experimental data provided a higher confidence in the ability for CFD to provide aerodynamic data in order to determine the static trim characteristics for longitudinal stability. The analyses of the noncontinuum regime showed the existence of multiple trim angles of attack that can be unstable or stable trim points. This information is needed to design guidance controller throughout the trajectory.

Bobskill, Glenn J.↗

NASA NTRSDate not supplied

TPSAS-NF1676L-13635-DND

Objectives of AePW: Assess state-of-the-art Computational Aeroelasticity (CAe) methods as practical tools for the prediction of static and dynamic aeroelastic phenomena and responses on relevant geometries. - Perform comparative computational studies on selected test cases - Identify errors & uncertainties in computational aeroelastic methods - Identify gaps in existing aeroelastic databases - Provide roadmap of path forward (additional existing data sets, new experimental data sets, and analytical methods developments).

Walt Silva↗

DOE OSTI2021

Cladding Profilometry Analysis of Experimental Breeder Reactor-II Metallic Fuel Pins with HT9, D9, and SS316 Cladding

BISON finite element method fuel performance simulations were conducted using an existing automated process that couples the Fuels Irradiation & Physics Database (FIPD) and the Integral Fast Reactor Materials Information System database by writing input files and comparing the BISON output to post-irradiation fuel pin profilometry measurements contained within the databases. The importance of this work is to demonstrate the ability to benchmark fuel performance metallic fuel models within BISON using Experimental Breeder Reactor-II fuel pin data for a number of similar pins, while building off previous modeling efforts. Changes to the generic BISON input file include implementing pin specific axial power and flux profiles, pin specific fluences, frictional contact, and irradiation-induced volumetric swelling models for cladding. A statistical analysis of irradiation-induced volumetric swelling models for HT9, D9, and SS316 was performed for experiments X421/X421A, X441/X441A, and X486. Between these three experiments, there were 174 post-irradiation examination (PIE) profilometries used for validating the swelling models presented using a standard error of the estimate (SEE) method. Implementation of the volumetric swelling models for D9 and SS316 claddings was found to have a significant impact on the BISON profilometry simulated, where HT9 clad pins had an insignificant change due to low fluence values. BISON profilometry simulated for HT9, D9, and SS316 fuel pins agreed with PIE profilometry measurements, with assembly SEE values being 4.4 × 10−3 for X421A, 2.0 × 10−3 for X441A, and 2.8 × 10−3 for X486. D9 clad pins in X421/X421A had the highest SEE values, which is due to the BISON simulated profilometry being shifted axially. While this work accomplished its purpose to demonstrate the modeling of multiple fuel pins from the databases to help validate models, the results suggest that the continued development of metallic fuel models is necessary for qualifying new metallic fuel systems to better capture some physical performance phenomena, such as the hot pressing of U-Pu-Zr and the fuel cladding chemical interaction.

11 NUCLEAR FUEL CYCLE AND FUEL MATERIALS↗

NASA NTRS2022

ThermoBase: A Database of the Phylogeny and Physiology of Thermophilic and Hyperthermophilic Organisms

Thermophiles and hyperthermophiles are those organisms which grow at high temperature (> 40°C). The unusual properties of these organisms have received interest in multiple fields of biological research, and have found applications in biotechnology, especially in industrial processes. However, there are few listings of thermophilic and hyperthermophilic organisms and their relevant environmental and physiological data. Such repositories can be used to standardize definitions of thermophile and hyperthermophile limits and tolerances and would mitigate the need for extracting organism data from diverse literature sources across multiple, sometimes loosely related, research fields. Therefore, we have developed ThermoBase, a web-based and freely available database which currently houses comprehensive descriptions for 1238 thermophilic or hyperthermophilic organisms. ThermoBase reports taxonomic, metabolic, environmental, experimental, and physiological information in addition to literature resources. This includes parameters such as coupling ions for chemiosmosis, optimal pH and range, optimal temperature and range, optimal pressure, and optimal salinity. The database interface allows for search features and sorting of parameters. As such, it is the goal of ThermoBase to facilitate and expedite hypothesis generation, literature research, and understanding relating to thermophiles and hyperthermophiles within the scientific community in an accessible and centralized repository. ThermoBase is freely available online at the Astrobiology Habitable Environments Database (AHED; https://ahed.nasa.gov), at the Database Center for Life Science (TogoDB; http://togodb.org/db/thermobase), and in the S1 File.

Thermophiles↗

DOE OSTI2022

Review of Experimental Data for Validating Computer Codes Used in Shielding Calculations for Spent Fuel Storage and Transportation Systems

This report presents a review of available radiochemical assay data and shielding benchmarks applicable to spent nuclear fuel (SNF) shielding calculations. The relevant information reviewed herein includes the Spent Fuel Composition (SFCOMPO) database, the Shielding Integral Benchmark Archive and Database (SINBAD), the International Handbook of Evaluated Criticality Safety Benchmark Experiments, and published measurements of external dose rates of casks loaded with SNF. The relevant experimental data identified in this report may be used to support verification and validation of computer codes used in SNF cask/transport shielding applications, as well as development of calculation uncertainties. It should be noted that a relatively small subset of the identified experimental data (e.g., criticality alarm experiments) is available in a standard format established by the international community participating in experimental isotopic and shielding data evaluations. An effort of the SFCOMPO Technical Review Group (TRG) is underway to publish first isotopic evaluations of individual assay data using a standard data evaluation format. The SINBAD TRG has recently initiated benchmark evaluations and modernization of the database. Therefore, more relevant information is expected in the future that will enable users to select quality experimental data in depletion code and shielding code validations for SNF applications.

11 NUCLEAR FUEL CYCLE AND FUEL MATERIALS↗

DOE OSTI2017

The NUBASE2016 evaluation of nuclear properties

This paper presents the NUBASE2016 evaluation that contains the recommended values for nuclear and decay properties of 3437 nuclides in their ground and excited isomeric (T1/2≥100 ns) states. All nuclides for which any experimental information is known were considered. NUBASE2016 covers all data published by October 2016 in primary (journal articles) and secondary (mainly laboratory reports and conference proceedings) references, together with the corresponding bibliographical information. During the development of NUBASE2016, the data available in the “Evaluated Nuclear Structure Data File” (ENSDF) database were consulted and critically assessed for their validity and completeness. Furthermore, a large amount of new data and some older experimental results that were missing from ENSDF were compiled, evaluated and included in NUBASE2016. The atomic mass values were taken from the “Atomic Mass Evaluation” (AME2016, second and third parts of the present issue). In cases where no experimental data were available for a particular nuclide, trends in the behavior of specific properties in neighboring nuclides (TNN) were examined. This approach allowed to estimate values for a range of properties that are labeled in NUBASE2016 as “non-experimental” (flagged “#”). Evaluation procedures and policies used during the development of this database are presented, together with a detailed table of recommended values and their uncertainties. AMDC: http://amdc.impcas.ac.cn/

Atomic Mass Evaluation (AME)↗

DOE OSTI2016

IMG/VR: a database of cultured and uncultured DNA Viruses and retroviruses

Viruses represent the most abundant life forms on the planet. Recent experimental and computational improvements have led to a dramatic increase in the number of viral genome sequences identified primarily from metagenomic samples. As a result of the expanding catalog of metagenomic viral sequences, there exists a need for a comprehensive computational platform integrating all these sequences with associated metadata and analytical tools. Here we present IMG/VR (https://img.jgi.doe.gov/vr/), the largest publicly available database of 3908 isolate reference DNA viruses with 264 413 computationally identified viral contigs from > 6000 ecologically diverse metagenomic samples. Approximately half of the viral contigs are grouped into genetically distinct quasi-species clusters. Microbial hosts are predicted for 20 000 viral sequences, revealing nine microbial phyla previously unreported to be infected by viruses. Viral sequences can be queried using a variety of associated metadata, including habitat type and geographic location of the samples, or taxonomic classification according to hallmark viral genes. IMG/VR has a user-friendly interface that allows users to interrogate all integrated data and interact by comparingwith external sequences, thus serving as an essential resource in the viral genomics community.

59 BASIC BIOLOGICAL SCIENCES↗

NASA NTRS2000

Development of a Reference Dose for Perchlorate: Current Issues and Status

The perchlorate anion (ClO4) is typically manufactured as the ammonium salt. The most common use of ammonium perchlorate is in the aerospace program as a component of solid rocket fuel. The perchlorate anion is exceedingly stable under environmental conditions and has been found in ground and surface waters in CA, NV, UT, AZ, TX, AK, NY, MD, WV and FL. The National Center for Environmental Assessment (NCEA) of the U.S. Environmental Protection Agency (US EPA) is in the process of developing an oral reference dose (RfD) for perchlorate. An oral RfD is a body-weight-adjusted dose that can be consumed daily over an entire lifetime with the expectation of no adverse health effects. Once developed, the new RfD will be used by US EPA as the basis of a safe-drinking-water level (SDWL) guideline. US EPA and regional regulatory agencies will then jointly or separately propose clean-up action levels for ground and surface waters at contaminated sites. The toxicological database on CIO4- as of March 1997 was determined by an expert peer-review panel to be inadequate for the purpose of deriving an oral RfD. For example, little or no experimental data existed on the subchronic, reproductive, or developmental toxicity of perchlorate. To fill gaps in the toxicological database, eight animal studies were designed by a government-industry consortium that included US EPA and AFRL. These studies were performed in 1997-1998. It has been known for many years that in the thyroid, high doses of perchlorate block the function of iodide by competing for iodide binding sites. Perchlorate was used in the 1950s-60s as a treatment for Graves' disease (a hyperthyroid condition). Because of what was already known about the pharmacological mode of action of perchlorate, specific concerns addressed in the design of the recent animal studies included the potential for developmental toxicity, notably neurological development. Upon review of complete study reports from four of the studies and incomplete data from the other two, US EPA/NCEA issued a document in December 1998 stating that the critical effects were hormone and histology data from the neurodevelopmental/behavioral toxicity study that had been performed in rats; an RfD was proposed based upon the observation of thyroid-follicular-cell hypertrophy in the 5-day-old pups (PND) of dams given perchlorate in drinking water at 0.1 mg/kg-day (the lowest dose tested) in this study. US EPA/NCEA also focused attention on a nonsignificant increase in motor activity observed in 14-day-old male pups in the same study at the same dose. In February 1999, a public workshop was convened at which an external peer-review panel determined that there was still insufficient data to support the development of a RfD. Additional studies were recommended. Since that time a clinical study revealed significant depression of thyroidal uptake of iodide in volunteers receiving potassium perchlorate at 10 mg/day for 14 days. Follow-up studies currently underway include a pathology working-group review of histology slides from the all of the previous studies, a motor activity study similar to the first behavioral study, an additional immunotoxicity study, male and female rat kinetic studies, a hormone interlaboratory study, and an effects study for thyroid and brain in developing rats. These studies are expected to be complete by mid-2000. A clinical study is planned to determine inhibition of iodide uptake and kinetic parameters in humans following 14-day perchlorate ingestion. The kinetics studies will provide data for developing physiologically based pharmacokinetic (PBPK) models for rats and humans needed to establish the RfD.

Pleus, R. C.↗