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NASA NTRS1991

Thioredoxin and evolution

Comparisons of primary structure have revealed significant homology between the m type thioredoxins of chloroplasts and the thioredoxins from a variety of bacteria. Chloroplast thioredoxin f, by comparison, remains an enigma: certain residues are invariant with those of the other thioredoxins, but a phylogenetic relationship to bacterial or m thioredoxins seems distant. Knowledge of the evolutionary history of thioredoxin f is, nevertheless, of interest because of its role in photosynthesis. Therefore, we have attempted to gain information on the evolutionary history of chloroplast thioredoxin f, as well as m. Our goal was first to establish the utility of thioredoxin as a phylogenetic marker, and, if found suitable, to deduce the evolutionary histories of the chloroplast thioredoxins. To this end, we have constructed phylogenetic (minimal replacement) trees using computer analysis. The results show that the thioredoxins of bacteria and animals fall into distinct phylogenetic groups - the bacterial group resembling that derived from earlier 16s RNA analysis and the animal group showing a cluster consistent with known relationships. The chloroplast thioredoxins show a novel type of phylogenetic arrangement: one m type aligns with its counterpart of eukaryotic algae, cyanobacteria and other bacteria, whereas the second type (f type) tracks with animal thioredoxin. The results give new insight into the evolution of photosynthesis.

Buchanan, B. B.↗

NASA NTRS1992

Time and wavelength domain algorithms for chemical analysis by laser radar

Laser-induced fluorescence (LIF) is a promising technique for laser radar applications. Laser radar using LIF has already been applied to algae blooms and oil slicks. Laser radar using LIF has great potential for remote chemical analysis because LIF spectra are extremely sensitive to chemical composition. However, most samples in the real world contain mixtures of fluorescing components, not merely individual components. Multicomponent analysis of laser radar returns from mixtures is often difficult because LIF spectra from solids and liquids are very broad and devoid of line structure. Therefore, algorithms for interpreting LIF spectra from laser radar returns must be able to analyze spectra that overlap in multicomponent systems. This paper analyzes the possibility of using factor analysis-rank annihilation (FARA) to analyze emission-time matrices (ETM) from laser radar returns instead of excitation-emission matrices (EEM). The authors here define ETM as matrices where the rows (or columns) are emission spectra at fixed times and the columns (or rows) are temporal profiles for fixed emission wavelengths. Laser radar usually uses pulsed lasers for ranging purposes, which are suitable for measuring temporal profiles. Laser radar targets are hard instead of diffuse; that is, a definite surface emits the fluorescence instead of an extended volume. A hard target would not broaden the temporal profiles as would a diffuse target. Both fluorescence lifetimes and emission spectra are sensitive to chemical composition. Therefore, temporal profiles can be used instead of excitation spectra in FARA analysis of laser radar returns. The resulting laser radar returns would be ETM instead of EEM.

Rosen, David L.↗

NASA NTRS1992

Stability limits for bioconvective fractals - Microgravity prospects

Fractal objects are delicate aggregates which show self-similar behavior and vanishing density for increasing length scales. In practice real fractals in nature however possess only a limited region of verifiable self-similarity. As natural fractal objects increase in size, they become easier to disrupt mechanically. Herein the effects of thermal vibrations and gravity are investigated as deforming forces on fractal aggregation. Example calculations are carried out on a biological fractal formed from the surface aggregation of various cells such as alga and bacteria. For typical cell parameters, the predicted diameter of this so-called 'bioconvective' fractal agrees well with the observed limits of about 5 cm. On earth, this size represents an experimental maximum for finding bioconvective fractal objects. To extend this size range of fractals available for statistical study, a reduced gravity environment offers one way to achieve larger fractals. For these enhanced sizes, the present scaling predicts that microgravity can yield up to a 35-fold improvement in extending statistical resolution.

Noever, David A.↗

NASA NTRS1992

Remote sensing of the biological dynamics of large-scale salt evaporation ponds

Optical properties of salt evaporation ponds associated with Exportadora de Sal, a salt production company in Baja California Sur, Mexico, were analyzed using a combination of spectroradiometer and extracted pigment data, and Landsat-5 Thematic Mapper imagery. The optical characteristics of each pond are determined by the biota, which consists of dense populations of algae and photosynthetic bacteria containing a wide variety of photosynthetic and photoprotective pigments. Analysis has shown that spectral and image data can differentiate between taxonomic groups of the microbiota, detect changes in population distributions, and reveal large-scale seasonal dynamics.

Richardson, Laurie L.↗

NASA NTRS1992

Ground testing of bioconvective variables such as morphological characterizations and mechanisms which regulate macroscopic patterns

Conditions simulating low- and high-gravity, reveal changes in macroscopic pattern formation in selected microorganisms, but whether these structures are gravity dependent is not clear. Two theories have been identified in the fluid dynamics community which support macroscopic pattern formation. The first one is gravity dependent (fluid density models) where small concentrated regions of organisms sink unstably, and the second is gravity independent (wave reinforcement theory) where organisms align their movements in concert, such that either their swimming strokes beat in phase or their vortices entrain neighbors to follow parallel paths. Studies have shown that macroscopic pattern formation is consistent with the fluid density models for protozoa and algae and wave reinforcement hypothesis for caprine spermatozoa.

Johnson, Adriel D.↗

NASA NTRS1992

Materials dispersion and biodynamics project research

The Materials Dispersion and Biodynamics Project (MDBP) focuses on dispersion and mixing of various biological materials and the dynamics of cell-to-cell communication and intracellular molecular trafficking in microgravity. Research activities encompass biomedical applications, basic cell biology, biotechnology (products from cells), protein crystal development, ecological life support systems (involving algae and bacteria), drug delivery (microencapsulation), biofilm deposition by living organisms, and hardware development to support living cells on Space Station Freedom (SSF). Project goals are to expand the existing microgravity science database through experiments on sounding rockets, the Shuttle, and COMET program orbiters and to evolve,through current database acquisition and feasibility testing, to more mature and larger-scale commercial operations on SSF. Maximized utilization of SSF for these science applications will mean that service companies will have a role in providing equipment for use by a number of different customers. An example of a potential forerunner of such a service for SSF is the Materials Dispersion Apparatus (MDA) 'mini lab' of Instrumentation Technology Associates, Inc. (ITA) in use on the Shuttle for the Commercial MDAITA Experiments (CMIX) Project. The MDA wells provide the capability for a number of investigators to perform mixing and bioprocessing experiments in space. In the area of human adaptation to microgravity, a significant database has been obtained over the past three decades. Some low-g effects are similar to Earth-based disorders (anemia, osteoporosis, neuromuscular diseases, and immune system disorders). As new information targets potential profit-making processes, services and products from microgravity, commercial space ventures are expected to expand accordingly. Cooperative CCDS research in the above mentioned areas is essential for maturing SSF biotechnology and to ensure U.S. leadership in space technology. Currently, the MDBP conducts collaborative research with investigators at the Rockefeller University, National Cancer Institute, and the Universities of California, Arizona, and Alabama in Birmingham. The growing database from these collaborations provides fundamental information applicable to development of cell products, manipulation of immune cell response, bone cell growth and mineralization, and other processes altered by low-gravity. Contacts with biotechnology and biopharmaceutical companies are being increased to reach uninformed potential SSF users, provide access through the CMDS to interested users for feasibility studies, and to continue active involvement of current participants. We encourage and actively seek participation of private sector companies, and university and government researchers interested in biopharmaceuticals, hardware development and fundamental research in microgravity.

Lewis, Marian L.↗

NASA NTRS1992

Design and evaluation of a payload to support plant growth onboard COMET 1

The paper describes the design and the operation principles of the Plant Module for Autonomous Space Support (P-MASS), designed to provide life support for a variety of plants, algae, and bacteria in low earth orbit during the maiden flight of COMET-1, scheduled for 1993. During flight (scheduled to continue for 30 days), both color video images and collected environmental data (including light intensity, temperature, relative humidity, CO2 and O2 concentrations, soil moisture, and nutrients released) will be downlinked to earth several times a day. These data will also be stored within the payload and retrieved from it after reentry and recovery.

Hoehn, A.↗

NASA NTRS1985

Distribution and metabolism of quaternary amines in salt marshes

Quaternary amines such as glycine betaine (GBT) are common osmotically active solutes in much of the marine biota. GBT is accumulated by various bacteria, algae, higher plants, invertebrates, and vertebrates in response to salinity or water stresses; in some species, GBT occurs at tens to hundreds of millimolar concentrations and can account for a significant fraction of total nitrogen. Initial studies suggest that GBT is readily converted to two potential methane precursors, trimethylamine (TMA) and acetate, in anoxic sediments. TMA is apparently the most important methane precursor in surface sediments containing sulfate reducing bacteria. In salt marshes, the bulk of the methane formed may be due to the metabolism of TMA rather than other substrates. Current research is focussed on testing this hypothesis and on determining the role of quaternary amino osmoregulatory solutes in methane fluxes from marine environments. Preliminary studies have dealt with several problems: (1) determination of GBT concentrations in the dominant flora and fauna of salt marshes; (2) synthesis of radiolabelled GBT for metabolic studies; and (3) determination of fates of BGT in marine sediments using radiotracers. Both GC and HPLC techniques have been used to assay GBT concentrations in plant and animal tissues. S. alterniflora is probably the only significant source of GBT (and indirectly of methane) since the biomass and distribution of most other species is limited. Current estimates suggest that S. alterniflora GBT could account for most of the methane efflux from salt marshes.

King, Gary M.↗

NASA NTRS1993

Electrochemical incineration of wastes

There is an increasing concern regarding the disposal of human wastes in space vehicles. It is of utmost importance to convert such wastes into harmless products which can be recycled into an Environmental Life Support System (CELSS), which incorporates the growth of plants (e.g. wheat) and algae to supplement the diet of the astronauts. Chemical treatments have proven relatively unsatisfactory and tend to be increasingly so with increase of the mission duration. Similarly, the use of heat to destroy wastes and convert them to CO2 by the use of air or oxygen has the disadvantage and difficulty of dissipating heat in a space environment and to the inevitable presence of oxides of nitrogen and carbon monoxide in the effluent gases. In particular, electrochemical techniques offer several advantages including low temperatures which may be used and the absence of any NO and CO in the evolved gases. Successful research has been carried out in the electrochemical oxidation of wastes over the last several years. The major task for 1992 was to conduct parametric studies in preparation for the building of a breadboard system, i.e., an actual practical device to consume the daily waste output of one astronaut in 24 hours, electrochemical incineration of human wastes in space vehicles. One of the main objectives was to decide on the type of three dimensional or other electrode system that would suit this purpose. The various types of electrode systems which were considered for this purpose included: rotating disc electrode, micro-electrode (an array), vibrating electrode, jet electrode, and packed bed electrode.

Bockris, J. O. M.↗

NASA NTRS1993

The 1993 Gordon Research Conference on Chronobiology

The study of biological timekeeping is now at a particularly fertile stage, encompassing multiple levels of biological organization, recruiting a wide array of disciplines and methodologies and uniting a host of investigators. This report summarizes a research conference on Chronobiology. Some of the topics focused on transcriptional and translational mechanisms of circadian rhythmicity, with discussions of putative 'clock genes' in cyanobacteria, algae, fungi, fruitflies, and hamsters. Cellular analysis, with emphasis on photoreceptors in frogs, neurons in molluscs, and testis in moths was addressed. New methods for investigating the circadian clock in the suprachiasmatic nucleus were introduced.

Schwartz, William J.↗

NASA NTRS1996

Some Pecularities of the Graviresponse in Vaucheria

The growth and position of nuclei in the siphonaceous alga Vaucheria sessilis were investigated under conditions of hypergravity and hypogravity. Under hypergravity conditions, active sporogenesis was observed. The accumulation of nuclei in the apical and branching zone preceeded the sporogenesis. The anti-microtubular agent, colchicine inhibits sporogenesis and the response of Vaucheria to hypergravity. Under hypogravity conditions, the quantity of nuclei increased throughout the whole branch. Colchicine prevents the migration of nuclei from the apical zone to the basal part of the branch. The anti-actin agent phalloidin prevents the formation of an actin network, and phalloidin-poisoned cells lose a cluster of nuclei in the apical zone. However, the gravity dependent response is less pronounced. It is supposed that, in Vaucheria sessilis, the primary stages of the reception and translation of gravitational signals coincide with those for light signals and active division of nuclei in the growth zone is an integral part of the graviresponse.

Gavrilova, O. V.↗

NASA NTRS1997

JOVE Program

Coastal reef degradation and widespread bleaching of corals, i.e. loss of pigments and/or symbiotic zooxanthellae, is increasing globally. Remote sensing has great potential for assessing the extent of reef change. However, measuring reef change from remote platforms (boats, aircraft or satellites), requires ground-truth spectral algorithms characteristic of healthy and degraded reef populations. Our laboratory experiments demonstrated, for the first time, that healthy coral colonies emit characteristic fluorescence spectra in response to excitation with short wavelength (blue or ultraviolet) light. Furthermore, following stress, e.g. increased temperature, corals lose symbiotic algae and their health is compromised. We measured changes in coral fluorescence spectra along with pigment loss in response to temperature-induced stress. Following laboratory demonstration, we tested this approach in the field. The NASA P3 aircraft with the airborne oceanographic LIDAR system was used to map transects of coral reef in Hawaii. Ground truth samples of coral; were collected and analyzed for pigment density (pigments/surface area). Fluorescence spectra along transects showed consistent chlorophyll fluorescence peaks at 685 nm from the chlorophyll of the zooxanthellae and peaks between 400 and 570 nm believed to emanate from the coral tissue. Our results suggest that remote sensing of laser-induced fluorescence represents an efficient and effective approach to monitoring the health of coral reefs. Lists of papers, conferences, proposals awarded and a summary of student involvement is included in the appendices.

Hardy, John T.↗

NASA NTRS1991

Lunar Farming: Achieving Maximum Yield for the Exploration of Space

A look at what it might be like on a lunar farm in the year 2020 is provided from the point of view of the farmer. Of necessity, the farm would be a Controlled Ecological (or Environment) Life-Support System (CELSS) or a bioregenerative life-support system. Topics covered in the imaginary trip through the farm are the light, water, gasses, crops, the medium used for plantings, and the required engineering. The CELSS is designed with four functioning parts: (1) A plant-production facility with higher plants and algae; (2) food technology kitchens; (3) waste processing and recycling facilities; and (4) control systems. In many cases there is not yet enough information to be sure about matters discussed, but the exercise in imagination pinpoints a number of areas that still need considerable research to resolve the problems perceived.

Salisbury, Frank B.↗

NASA NTRS1997

The effects of atmospheric [CO2] on carbon isotope fractionation and magnesium incorporation into biogenic marine calcite

The influences of atmospheric carbon dioxide on the fractionation of carbon isotopes and the magnesium incorporation into biogenic marine calcite were investigated using samples of the calcareous alga Amphiroa and benthic foraminifer Sorites grown in the Biosphere 2 Ocean system under variable atmospheric CO2 concentrations (approximately 500 to 1200 ppm). Carbon isotope fractionation was studied in both the organic matter and the skeletal carbonate. Magnesium analysis was to be performed on the carbonate removed during decalcification. These data have not been collected due to technical problems. Carbon isotope data from Amphiroa yields a linear relation between [CO2] and Delta(sup 13)C(sub Corg)values suggesting that the fractionation of carbon isotopes during photosynthesis is positively correlated with atmospheric [CO2]. [CO2] and Delta(sup 13)C(sub Corg) values for Sorites produce a relation that is best described by a hyperbolic function where Delta(sup 13)C(sub Corg) values increase between 300 and 700 ppm and decrease from 700 to 1200 ppm. Further investigation of this relation and Sorites physiology is needed.

Vieira, Veronica↗

NASA NTRS1994

Design Issues of GaAs and AlGaAs Delta-Doped p-i-n Quantum-Well APD's

We examine the basic design issues in the optimization of GaAs delta-doped and AlGAs delta-doped quantum-well avalanche photodiode (APD) structures using a theoretical analysis based on an ensemble Monte Carlo simulation. The devices are variations of the p-i-n doped quantum-well structure previously described in the literature. They have the same low-noise, high-gain and high-bandwidth features as the p-i-n doped quantum-well device. However, the use of delta doping provides far greater control or the doping concentrations within each stage possibly enhancing the extent to which the device can be depleted. As a result, it is expected that the proposed devices will operate at higher gain levels (at very low noise) than devices previously developed.

Wang, Yang↗

NASA NTRS2000

Morphology and Viability of Pleistocene Microbiota from the CRREL Permafrost Tunnel Near Fox, Alaska

The U. S. Army Cold Regions Research and Engineering Laboratory maintains the CRREL Permafrost Tunnel at Fox, Alaska (-10 miles north of Fairbanks.) The active microbial ecosystems and the cryopreserved anabiotic viable microorganisms and dead microbial remains and biomarkers frozen within the permafrost and ice of the CRREL Permafrost Tunnel are of direct relevance to Astrobiology. Microbial extremophiles from permafrost and ice provide information concerning where and how should we search for evidence of life elsewhere in the Cosmos. The permafrost and ice wedges of the Fox tunnel preserves a magnificent of record of Pliocene, Pleistocene and Holocene life on Earth spanning more than 2.5 million years. This record includes frozen fossil bacteria, archaea, algae, mosses, higher plants, insects and mammals. In this paper we present the preliminary results of studies of the morphology, ultramicrostructure and elemental distributions of Fox tunnel microbiota as determined in-situ by the Environmental Scanning Electron Microscope (ESEM) and the Field Emission Scanning Electron Microscope (FESEM) investigations. The long-term viability of cryopreserved microbiota and potential implications to Astrobiology will be discussed.

Hoover, Richard B.↗

NASA NTRS1997

Will Global Change Effect Primary Productivity in Coastal Ecosystems?

Algae are the base of coastal food webs because they provide the source of organic carbon for the remaining members of the community. Thus, the rate that they produce organic carbon to a large extent controls the productivity of the entire ecosystem. Factors that control algal productivity range from the physical (e.g., temperature, light), chemical (e.g., nutrient levels) to the biological (e.g., grazing). Currently, levels of atmospheric carbon dioxide surficial fluxes of ultraviolet radiation are rising. Both of these environmental variables can have a profound effect on algal productivity. Atmospheric carbon dioxide may increase surficial levels of dissolved inorganic carbon. Our laboratory and field studies of algal mats and phytoplankton cultures under ambient and elevated levels of pCO2 show that elevated levels of inorganic carbon can cause an increase in photosynthetic rates. In some cases, this increase will cause an increase in phytoplankton numbers. There may be an increase in the excretion of fixed carbon, which in turn may enhance bacterial productivity. Alternatively, in analogy with studies on the effect of elevated pCO2 on plants, the phytoplankton could change their carbon to nitrogen ratios, which will effect the feeding of the planktonic grazers. The seasonal depletion of stratospheric ozone has resulted in elevated fluxes of UVB radiation superimposed on the normal seasonal variation. Present surface UV fluxes have a significant impact on phytoplankton physiology, including the inhibition of the light and dark reactions of photosynthesis, inhibition of nitrogenase activity, inhibition of heterocyst formation, reduction in motility, increased synthesis of the UV-screening pigment scytonemin, and mutation. After reviewing these issues, recent work in our lab on measuring the effect of UV radiation on phytoplankton in the San Francisco Bay Estuary will be presented.

Rothschild, Lynn J.↗

NASA NTRS2002

Visions of our Planet's Atmosphere, Land and Oceans: NASA/NOAA Electronic Theater 2002

The NASA/NOAA Electronic Theater presents Earth science observations and visualizations in a historical perspective. Fly in from outer space to the Olympic Medals Plaza, the new Gateway Center, and the University of Utah Stadium Site of the Olympic Opening and Closing Ceremonies in Salt Lake City. Fly in and through the Park City, and Snow Basin sites of the 2002 Winter Olympic Alpine Venues using 1 m IKONOS "Spy Satellite" data. See the four seasons of the Wasatch Front as observed by Landsat 7 at 15m resolution and watch the trees turn color in the Fall, snow come and go in the mountains and the reservoirs freeze and melt. Go back to the early weather satellite images from the 1960s and see them contrasted with the latest US and international global satellite weather movies Including hurricanes & "tornadoes". See the latest visualizations of spectacular images from NASA/NOAA remote sensing missions like Terra, GOES, TRMM, SeaWiFS, Landsat 7 including new 1 - min GOES rapid scan image sequences of Nov 9th 2001 Midwest tornadic thunderstorms and have them explained. See how High-Definition Television (HDTV) is revolutionizing the way we communicate science. (In cooperation with the American Museum of Natural History in NYC) See dust storms in Africa and smoke plumes from fires in Mexico. See visualizations featured on the covers Of Newsweek, TIME, National Geographic, Popular Science & on National & International Network TV. New computer software. tools allow us to roam & zoom through massive global images e.g. Landsat tours of the US, and Africa, showing desert and mountain geology as well as seasonal changes in vegetation. See animations of the polar ice packs and the motion of gigantic Antarctic Icebergs from SeaWinds data. Spectacular new visualizations of the global atmosphere & oceans are shown. See vertexes and currents in the global oceans that bring up the nutrients to feed tin) algae and draw the fish, whales and fisherman. See the how the ocean blooms in response to these currents and El Nino/La Nina climate changes. See the city lights, fishing fleets, gas flares and biomass burning of the Earth at night observed by the "night-vision" DMSP military satellite. The demonstration is interactively driven by a SGI Octane Graphics Supercomputer with two CPUs, 4 Gigabytes of RAM and 0.5 Terabyte of disk using two projectors across a super sized panoramic 48 foot screen. In addition new HDTV technology will be demonstrated from a portable computer server.

Hasler, A. F.↗