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At least 559 records · Page 31

A New Semistructured Algebraic Multigrid Method

Multigrid methods are well suited to large massively parallel computer architectures because they are mathematically optimal and display good parallelization properties. Since current architecture trends are favoring regular compute patterns to achieve high performance, the ability to express structure has become much more important. The hypre software library provides high-performance multigrid preconditioners and solvers through conceptual interfaces, including a semistructured interface that describes matrices primarily in terms of stencils and logically structured grids. This paper presents a new semistructured algebraic multigrid (SSAMG) method built on this interface. The numerical convergence and performance of a CPU implementation of this method are evaluated for a set of semistructured problems. In conclusion, SSAMG achieves significantly better setup times than hypre’s unstructured AMG solvers and comparable convergence. In addition, the new method is capable of solving more complex problems than hypre’s structured solvers.

97 MATHEMATICS AND COMPUTING↗

Development of a New Fixed-source Sensitivity Tally Capability in the MCNP ® Code [Slides]

Current work includes FSEN capability development, continued verification of adjoint-weighted sensitivity method, and improvement of algorithm speed and parallelism capability. Future work is forecasted to include extensions to non-Boltzmann responses, adding more responses and particle types, and connection to new MCNP6.3 tally backend.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

Fast multiscale contrast independent preconditioners for linear elastic topology optimization problems

The goal of this work is to present a fast and viable approach for the numerical solution of the high-contrast state problems arising in topology optimization. The optimization process is iterative, and the gradients are obtained by an adjoint analysis, which requires the numerical solution of large high-contrast linear elastic problems with features spanning several length scales. The size of the discretized problems forces the utilization of iterative linear solvers with solution time dependent on the quality of the preconditioner. The lack of clear separation between the scales, as well as the high-contrast, imposes severe challenges on the standard preconditioning techniques. Thus, here we propose new methods for the high-contrast elasticity equation with performance independent of the high-contrast and the multi-scale structure of the elasticity problem. The solvers are based on two-levels domain decomposition techniques with a carefully constructed coarse level to deal with the high-contrast and multi-scale nature of the problem. The construction utilizes spectral equivalence between scalar diffusion and each displacement block of the elasticity problems and, in contrast to previous solutions proposed in the literature, is able to select the appropriate dimension of the coarse space automatically. The new methods inherit the advantages of domain decomposition techniques, such as easy parallelization and scalability. Finally, the presented numerical experiments demonstrate the excellent performance of the proposed methods.

97 MATHEMATICS AND COMPUTING↗

Highly Efficient Compensation-Based Parallelism for Wavefront Loops on GPUs

Wavefront loops are widely used in many scientific applications, e.g., partial differential equation (PDE) solvers and sequence alignment tools. However, due to the data dependencies in wavefront loops, it is challenging to fully utilize the abundant compute units of GPUs and to reuse data through their memory hierarchy. Existing solutions can only optimize for these factors to a limited extent. For example, tiling-based methods optimize memory access but may result in load imbalance; while compensation-based methods, which change the original order of computation to expose more parallelism and then compensate for it, suffer from both global synchronization overhead and limited generality. In this paper, we first prove under which circumstances that breaking data dependencies and properly changing the sequence of computation operators in our compensation-based method does not affect the correctness of results. Based on this analysis, we design a highly efficient compensation-based parallelism on GPUs. Our method provides weighted scan-based GPU kernels to optimize the computation and combines with the tiling method to optimize memory access and synchronization. The performance results on the NVIDIA K80 and P100 GPU platforms demonstrate that our method can achieve significant improvements for four types of real-world application kernels over the state-of-the-art research.

Hou, Kaixi↗

Hydrodynamic irreversibility of non-Brownian suspensions in highly confined duct flow

The irreversible behaviour of a highly confined non-Brownian suspension of spherical particles at low Reynolds number in a Newtonian fluid is studied experimentally and numerically. In the experiment, the suspension is confined in a thin rectangular channel that prevents complete particle overlap in the narrow dimension and is subjected to an oscillatory pressure-driven flow. In the small cross-sectional dimension, particles rapidly separate to the walls, whereas in the large dimension, features reminiscent of shear-induced migration in bulk suspensions are recovered. Furthermore, as a consequence of the channel geometry and the development and application of a single-camera particle tracking method, three-dimensional particle trajectories are obtained that allow us to directly associate relative particle proximity with the observed migration. Companion simulations of a steadily flowing suspension highly confined between parallel plates are conducted using the force coupling method, which also show rapid migration to the walls as well as other salient features observed in the experiment. While we consider relatively low volume fractions compared to most prior work in the area, we nevertheless observe significant and rapid migration, which we attribute to the high degree of confinement.

42 ENGINEERING↗

Computing the ankle-brachial index with parallel computational fluid dynamics

The ankle-brachial index (ABI), a ratio of arterial blood pressure in the ankles and upper arms, is used to diagnose and monitor circulatory conditions such as coarctation of the aorta and peripheral artery disease. Computational simulations of the ABI can potentially determine the parameters that produce an ABI indicative of ischemia or other abnormalities in blood flow. However, 0- and 1-D computational methods are limited in describing a 3-D patient-derived geometry. Thus, we present a massively parallel framework for computational fluid dynamics (CFD) simulations in the full arterial system. Additionally, using the lattice Boltzmann method to solve the Navier–Stokes equations, we employ highly parallelized and scalable methods to generate the simulation domain and efficiently distribute the computational load among processors. For the first time, we compute an ABI with 3-D CFD. In this proof-of-concept study, we investigate the dependence of ABI on the presence of stenoses, or narrowed regions of the arteries, by directly modifying the arterial geometry. As a result, our framework enables the computation a hemodynamic factor characterizing flow at the scale of the full arterial system, in a manner that is extensible to patient-specific imaging data and holds potential for treatment planning.

59 BASIC BIOLOGICAL SCIENCES↗

Error Propagation for Response Matrix Methods in the Many Node Limit

The response matrix method has been a useful solution method for radiation transport problems for decades. The method is desirable for many reasons. It can be extended to both fixed source and eigenvalue problems. In addition, a key aspect of the method is a shift of computational expense to a precomputation phase. Methods and codes employing response matrix or response matrix-like methods have enjoyed formidable computational efficiency while solving large problems. However, current applications of the method rely on large node sizes and few nodes to maximize computational efficiency. As part of a desire to make these methods more amenable to applications such as parallel computing in the future, the number of nodes in problems may increase, and node size will decrease. The effect of this change has not been well studied except for a few cases. In the past, it was determined that a poor approximation of angular dependence of flux on node interfaces could lead to large error propagation for fixed source problems, but a newer study indicates that changing node sizes as well as number of nodes poses little challenge for response methods in the eigenvalue case. This paper presents the unintuitive result that for response matrix methods increasing the spatial resolution of the problem may dramatically decrease accuracy - this effect is demonstrated on a simple analytic 1-D benchmark problem. (authors)

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

Modulated heat pulse propagation and partial transport barriers in chaotic magnetic fields

Direct numerical simulations of the time dependent parallel heat transport equation modeling heat pulses driven by power modulation in three-dimensional chaotic magnetic fields are presented. The numerical method is based on the Fourier formulation of a Lagrangian-Green's function method that provides an accurate and efficient technique for the solution of the parallel heat transport equation in the presence of harmonic power modulation. The numerical results presented provide conclusive evidence that even in the absence of magnetic flux surfaces, chaotic magnetic field configurations with intermediate levels of stochasticity exhibit transport barriers to modulated heat pulse propagation. In particular, high-order islands and remnants of destroyed flux surfaces (Cantori) act as partial barriers that slow down or even stop the propagation of heat waves at places where the magnetic field connection length exhibits a strong gradient. Results on modulated heat pulse propagation in fully stochastic fields and across magnetic islands are also presented. In qualitative agreement with recent experiments in large helical device and DIII-D, it is shown that the elliptic (O) and hyperbolic (X) points of magnetic islands have a direct impact on the spatio-temporal dependence of the amplitude of modulated heat pulses.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

Conversion of Resonance Parameters Between Wigner-Eisenbud R-matrix and Transition Matrix Pole Representation

The goal of this research is to develop a numerical code for translation between the current standard, Wigner-Eisenbud R-matrix parameters and a novel pole-representation of cross sections. The method follows Ducru et al. and constructs the conversion between these parametric representations of the scattering and reaction data. This pole representation, which expresses cross sections as a sum of simple poles (and their attendant residues), is examined in the context of the advantages provided by this compact, computationally efficient representation. These advantages include the ability to doppler broaden cross sections on-the-fly as well as a lower memory footprint when generating cross sections, an attractive feature to those interested in parallel GPU based Monte Carlo. Some conversion methods between R-matrix parameters and S-matrix poles have relied on curve fitting techniques. It is unknown weather these numerical methods necessarily preserve certain underlying physics properties of the standard R-matrix cross section model (such as unitarity). The direct conversion studied here aim to preserve such properties. This knowledge is of interest for future work into the generation of resonance parameter sensitivities.

CLUTCH↗

Metallization of conductive wires for solar cells

Methods of fabricating a solar cell, and system for electrically coupling solar cells, are described. In an example, the methods for fabricating a solar cell can include placing conductive wires in a wire guide, where conductive wires are placed over a first semiconductor substrate having first doped regions and second doped regions. The method can include aligning the conductive wires over the first and second doped regions, where the wire guide aligns the conductive wires substantially parallel to the first and second doped regions. The method can include bonding the conductive wires to the first and second doped regions. The bonding can include applying a mechanical force to the semiconductor substrate via a roller or bonding head of the wire guide, where the wire guide inhibits lateral movement of the conductive wires during the bonding.

Sewell, Richard Hamilton↗

A fast particle-based approach for calibrating a 3-D model of the Antarctic ice sheet

We consider the scientifically challenging and policy-relevant task of understanding the past and projecting the future dynamics of the Antarctic ice sheet. The Antarctic ice sheet has shown a highly nonlinear threshold response to past climate forcings. Triggering such a threshold response through anthropogenic greenhouse gas emissions would drive drastic and potentially fast sea level rise with important implications for coastal flood risks. Previous studies have combined information from ice sheet models and observations to calibrate model parameters. These studies have broken important new ground but have either adopted simple ice sheet models or have limited the number of parameters to allow for the use of more complex models. These limitations are largely due to the computational challenges posed by calibration as models become more computationally intensive or when the number of parameters increases. Here, we propose a method to alleviate this problem: a fast sequential Monte Carlo method that takes advantage of the massive parallelization afforded by modern high-performance computing systems. We use simulated examples to demonstrate how our sample-based approach provides accurate approximations to the posterior distributions of the calibrated parameters. The drastic reduction in computational times enables us to provide new insights into important scientific questions, for example, the impact of Pliocene era data and prior parameter information on sea level projections. These studies would be computationally prohibitive with other computational approaches for calibration such as Markov chain Monte Carlo or emulation-based methods. We also find considerable differences in the distributions of sea level projections when we account for a larger number of uncertain parameters. For example, based on the same ice sheet model and data set, the 99th percentile of the Antarctic ice sheet contribution to sea level rise in 2300 increases from 6.5 m to 13.1 m when we increase the number of calibrated parameters from three to 11. With previous calibration methods, it would be challenging to go beyond five parameters. Here, this work provides an important next step toward improving the uncertainty quantification of complex, computationally intensive and decision-relevant models.

54 ENVIRONMENTAL SCIENCES↗

Hexagonal Geometries in MPACT

The MPACT code is a high-fidelity light-water reactor analysis code using whole-core pin-resolved neutron transport calculations on modern parallel-computing hardware. MPACT uses the 2D/1D method to solve 3D neutron transport problems by decomposing the problem into a stack of 2D slices, each of which is solved independently using the method of characteristics (MOC). The slices are then coupled axially using the P3 nodal expansion method (NEM-P3) for the 1D axial calculations. MPACT also employs the coarse mesh finite difference (CMFD) method to accelerate calculations. This manuscript details work supporting advanced reactor designs using hexagonal pins and hexagonal assemblies such as the VVER-1000. If performed correctly, MOC is geometry agnostic. However, MPACT previously had optimizations in place for Cartesian geometries, specifically in the modularization and current calculations. Sections 2 and 3 detail the changes made to MPACT to support MOC and CMFD calculations on hexagonal geometries. Section 4 reports results demonstrating solution consistency for problems run with and without CMFD acceleration, results demonstrating solution consistency when run in serial and parallel, and pincell results using the Monte Carlo code, McCard’s benchmark results.

22 GENERAL STUDIES OF NUCLEAR REACTORS↗

WE-EF-303-04: An Advanced Image Processing Method to Improve the Spatial Resolution of Proton Radiographies

Purpose: We present an optimization method to improve the spatial resolution and the water equivalent thickness accuracy of proton radiographies. Methods: The method is designed for imaging systems measuring only the residual range of protons without relying on tracker detectors to determine the beam trajectory before and after the target. Specifically, the method was used for an imaging set-up consisting of a stack of 61 parallel-plate ionization chambers (PPIC) working as a range telescope. The method uses a decomposition approach of the residual range signal measured by the PPIC and constructs subimages with small size pixels geometrically rearranged and appropriately averaged to be merged into a final single radiography. The method was tested using Monte Carlo simulated and experimental proton radiographies of a PMMA step phantom and an anthropomorphic head phantom. Results: For the step phantom, the effective spatial resolution was found to be 4 and 3 times higher than the nominal resolution for the simulated and experimental radiographies, respectively. For the head phantom, a gamma index was calculated to quantify the conformity of the simulated proton radiographies with a digitally reconstructed X-ray radiography convolved with a Gaussian kernel equal to the proton beam spot-size. For DTA=2.5 mm and RD=2.5%, the passing ratio was 100%/85% for the optimized/non-optimized case, respectively. An extension of the method allows reducing the dose given to the patient during radiography acquisition. We show that despite a dose reduction of 25 times (leading to a dose of 0.016 mGy for the current imaging set-up), the image quality of the optimized radiographies remains fairly unaffected for both the simulated and experimental results. Conclusion: The optimization method leads to a significant increase of the spatial resolution allowing recovering image details that are unresolved in non-optimized radiographies. These results represent a major step towards clinical application of proton radiography.

60 APPLIED LIFE SCIENCES↗

Multigrid Reduction in Time for Chaotic and Hyperbolic Problems (Final Report)

The coming massive parallelism of exascale computing presents a pressing challenge for the many DOE simulations of time-dependent partial differential equations (PDEs), which typically use traditional sequential time stepping methods. Since this traditional approach is inherently serial, it presents a sequential bottleneck when moving to exascale computing, because future performance gains will come through greater concurrency, not faster clock speeds. Thus, the goal of this work is to research parallelism in time, i.e., methods that compute multiple time values simultaneously, not sequentially. The focus will be on hyperbolic and chaotic problems of interest to DOE, with the goal of enabling scalable simulations of time-dependent hyperbolic and chaotic problems on future architectures. The chosen methodology for solving these problems parallel-in-time is multigrid, because multigrid (when it works) is a powerful, optimal, and scalable solver for discretized PDEs. Multigrid is already commonly used in many DOE simulations for scalably and optimally solving space-only PDE problems. The areas of hyperbolic and chaotic problems are chosen because of their relevance to problems of programmatic interest to DOE. However, these problems are also well-known to be difficult for parallelin-time methods, with the most common method, parareal, diverging in many cases. The current state-of-the-art for parallel-in-time at LLNL is the multigrid reduction in time (MGRIT) XBraid package, which also struggles for such problems, while still showing some improvement over parareal. In summary, new methods are needed for an efficient parallel-in-time scheme for hyperbolic and chaotic problems, and this work shall research promising new multigrid methods in this area. In particular, this work shall continue researching the directions from the current collaboration with Dr. Falgout, which are laid out in the work Toward Parallel in Time for Chaotic Dynamical Systems and showed the first known results of a parallel-in-time speedup for a chaotic problem. This work outlines two key improvements to XBraid for chaotic problems, the so-called “theta” and “delta-correction” methods. Here, these two improvements will be implemented in a high-performance but general way in XBraid and explored for more complicated problems. We will additionally research, as time allows, improvements to these techniques, as well as multigrid relaxation techniques based on Least Squares Shadowing (LSS by Wang) and a nonintrusive block tridiagonal solver based on MGRIT, called TriMGRIT.

97 MATHEMATICS AND COMPUTING↗

Methods for controlling pore morphology in aerogels using electric fields and products thereof

In one embodiment, an aerogel or xerogel includes column structures of a material having minor pores therein and major pores devoid of the material positioned between the column structures, where longitudinal axes of the major pores are substantially parallel to one another. In another embodiment, a method includes heating a sol including aerogel or xerogel precursor materials to cause gelation thereof to form an aerogel or xerogel and exposing the heated sol to an electric field, wherein the electric field causes orientation of a microstructure of the sol during gelation, which is retained by the aerogel or xerogel. In one approach, an aerogel has elongated pores extending between a material arranged in column structures having structural characteristics of being formed from a sol exposed to an electric field that causes orientation of a microstructure of the sol during gelation which is retained by the elongated pores of the aerogel.

36 MATERIALS SCIENCE↗

An overlapping domain decomposition method for large-scale problems

Discretization of dynamical models defined through partial differential equations leads to large-scale systems. Time-depending condition involves an iterative integration of such kind of systems. In this paper, a novel technique based on overlapped domain decomposition, without preconditioner and scalable, is presented. Due to the domain decomposition, subproblems are solved in parallel without communications, cutting off the computation time and optimizing the computational cost. This direct method describes an optimized parallel strategy to solve the initial problem, providing the exact solution, up to rounding errors. Moreover, it takes into account both physical nature of the problem and deriving numerical properties of the system. It is highly recommended in case of band matrices and a long time interval because of an increasing gain in terms of performance and computational cost with the number of integrations. A deep analysis of the computational cost concludes the paper.

97 MATHEMATICS AND COMPUTING↗

Neoclassical parallel flow calculation in the presence of external parallel momentum sources in Heliotron J

A moment approach to calculate neoclassical transport in non-axisymmetric torus plasmas composed of multiple ion species is extended to include the external parallel momentum sources due to unbalanced tangential neutral beam injections (NBIs). The momentum sources that are included in the parallel momentum balance are calculated from the collision operators of background particles with fast ions. This method is applied for the clarification of the physical mechanism of the neoclassical parallel ion flows and the multi-ion species effect on them in Heliotron J NBI plasmas. It is found that parallel ion flow can be determined by the balance between the parallel viscosity and the external momentum source in the region where the external source is much larger than the thermodynamic force driven source in the collisional plasmas. This is because the friction between C{sup 6+} and D{sup +} prevents a large difference between C{sup 6+} and D{sup +} flow velocities in such plasmas. The C{sup 6+} flow velocities, which are measured by the charge exchange recombination spectroscopy system, are numerically evaluated with this method. It is shown that the experimentally measured C{sup 6+} impurity flow velocities do not contradict clearly with the neoclassical estimations, and the dependence of parallel flow velocities on the magnetic field ripples is consistent in both results.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

Non-Abelian 𝜈 =$\frac{1}{2}$ quantum Hall state in $Γ$ 8 valence band hole liquid

In the search for states with non-Abelian statistics, we explore the fractional quantum Hall effect in a system of two-dimensional (2D) charge carrier holes. We propose a method of mapping states of holes confined to a finite width quantum well in a perpendicular magnetic field to states in a spherical shell geometry. We take into account strong coupling between the spin and motion of charge parallel and perpendicular to the 2D layer. This method gives the single-particle hole states used in the exact diagonalization of systems with a small number of holes in the presence of Coulomb interactions, density matrix renormalization group, and topological entanglement entropy calculations. Furthermore, the hole quantum Hall state at half filling of the ground state in a magnetic field near the crossing of single-hole states is likely the Moore-Read Pfaffian state.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗