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All sourcesNASA NTRSDOE OSTI
DOE OSTI2015

Analysis of brain patterns using temporal measures

A set of brain data representing a time series of neurophysiologic activity acquired by spatially distributed sensors arranged to detect neural signaling of a brain (such as by the use of magnetoencephalography) is obtained. The set of brain data is processed to obtain a dynamic brain model based on a set of statistically-independent temporal measures, such as partial cross correlations, among groupings of different time series within the set of brain data. The dynamic brain model represents interactions between neural populations of the brain occurring close in time, such as with zero lag, for example. The dynamic brain model can be analyzed to obtain the neurophysiologic assessment of the brain. Data processing techniques may be used to assess structural or neurochemical brain pathologies.

62 RADIOLOGY AND NUCLEAR MEDICINE↗
DOE OSTI2024

Detection of Isotopes in Urban Source Search Gamma Spectra Using Hopfield Neural Network

Source search campaigns involve the measurement of consecutive background gamma-ray spectra obtained with a mobile detector-spectrometer, such as tellurium-doped sodium iodide NaI(Tl) scintillator detector-spectrometer. Counts are measured with NaI(Tl) detector in short acquisition intervals, such as one second. Detection of isotopes in search data is challenging because of the low signal-to-noise ratio (S/N) of the spectral lines and highly varying background due to naturally occurring radioactive material (NORM). In this work, we investigate the performance of the detection of orphan Cs-137, Am-241, and I-131 isotopes in a gamma ray data set obtained in a search survey. Isotopic detection is performed with a Hopfield Neural Network (HNN), which implements an auto-associative memory by matching incoming measurements to the closest one of its memory-stored signature patterns. HNN is trained on examples of spectra of calibrated isotopic sources with well-resolved spectral lines. During testing, HNN processes spectra with partially complete or distorted isotopic lines. The performance of the HNN detection algorithm is benchmarked with Precision, Recall, and F1 scores. Test results demonstrate the potential of HNN to detect the isotope of interest with high accuracy (F1 > 90%) for all isotopes in this study.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗
DOE OSTI2016

First detection of gas-phase methanol in a protoplanetary disk

The first detection of gas-phase methanol in a protoplanetary disk (TW Hya) is presented. In addition to being one of the largest molecules detected in disks to date, methanol is also the first disk organic molecule with an unambiguous ice chemistry origin. The stacked methanol emission, as observed with the Atacama Large Millimeter/submillimeter Array, is spectrally resolved and detected across six velocity channels (>3σ), reaching a peak signal-to-noise of 5.5σ, with the kinematic pattern expected for TW Hya. Using an appropriate disk model, a fractional abundance of 3×10{sup −12}--4×10{sup −11} (with respect to H{sub 2}) reproduces the stacked line profile and channel maps, with the favored abundance dependent upon the assumed vertical location (midplane versus molecular layer). The peak emission is offset from the source position, suggesting that the methanol emission has a ring-like morphology: the analysis here suggests it peaks at ≈30 au, reaching a column density ≈3--6×10{sup 12} cm{sup −2}. In the case of TW Hya, the larger (up to millimeter-sized) grains, residing in the inner 50 au, may thus host the bulk of the disk ice reservoir. The successful detection of cold gas-phase methanol in a protoplanetary disk implies that the products of ice chemistry can be explored in disks, opening a window into studying complex organic chemistry during planetary system formation.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2015

Eye-tracking of nodule detection in lung CT volumetric data

Purpose: Signal detection on 3D medical images depends on many factors, such as foveal and peripheral vision, the type of signal, and background complexity, and the speed at which the frames are displayed. In this paper, the authors focus on the speed with which radiologists and naïve observers search through medical images. Prior to the study, the authors asked the radiologists to estimate the speed at which they scrolled through CT sets. They gave a subjective estimate of 5 frames per second (fps). The aim of this paper is to measure and analyze the speed with which humans scroll through image stacks, showing a method to visually display the behavior of observers as the search is made as well as measuring the accuracy of the decisions. This information will be useful in the development of model observers, mathematical algorithms that can be used to evaluate diagnostic imaging systems. Methods: The authors performed a series of 3D 4-alternative forced-choice lung nodule detection tasks on volumetric stacks of chest CT images iteratively reconstructed in lung algorithm. The strategy used by three radiologists and three naïve observers was assessed using an eye-tracker in order to establish where their gaze was fixed during the experiment and to verify that when a decision was made, a correct answer was not due only to chance. In a first set of experiments, the observers were restricted to read the images at three fixed speeds of image scrolling and were allowed to see each alternative once. In the second set of experiments, the subjects were allowed to scroll through the image stacks at will with no time or gaze limits. In both static-speed and free-scrolling conditions, the four image stacks were displayed simultaneously. All trials were shown at two different image contrasts. Results: The authors were able to determine a histogram of scrolling speeds in frames per second. The scrolling speed of the naïve observers and the radiologists at the moment the signal was detected was measured at 25–30 fps. For the task chosen, the performance of the observers was not affected by the contrast or experience of the observer. However, the naïve observers exhibited a different pattern of scrolling than the radiologists, which included a tendency toward higher number of direction changes and number of slices viewed. Conclusions: The authors have determined a distribution of speeds for volumetric detection tasks. The speed at detection was higher than that subjectively estimated by the radiologists before the experiment. The speed information that was measured will be useful in the development of 3D model observers, especially anthropomorphic model observers which try to mimic human behavior.

60 APPLIED LIFE SCIENCES↗
DOE OSTI2015

Characterization of extreme precipitation within atmospheric river events over California

Atmospheric rivers (ARs) are large, spatially coherent weather systems with high concentrations of elevated water vapor. These systems often cause severe downpours and flooding over the western coastal United States – and with the availability of more atmospheric moisture in the future under global warming we expect ARs to play an important role as potential causes of extreme precipitation changes. Therefore, we aim to investigate changes in extreme precipitation properties correlated with AR events in a warmer climate, which are large-scale meteorological patterns affecting the weather and climate of California. We have recently developed the TECA (Toolkit for Extreme Climate Analysis) software for automatically identifying and tracking features in climate data sets. Specifically, we can now identify ARs that make landfall on the western coast of North America. Based on this detection procedure, we can investigate the impact of ARs by exploring the spatial extent of AR precipitation using climate model (CMIP5) simulations and characterize spatial patterns of dependence for future projections between AR precipitation extremes under climate change within the statistical framework. Our results show that AR events in the future RCP (Representative Concentration Pathway)8.5 scenario (2076–2100) tend to produce heavier rainfall with higher frequency and longer days than events from the historical run (1981–2005). We also find that the dependence between extreme precipitation events has a shorter spatial range, within localized areas in California, under the high future emissions scenario than under the historical run.

Jeon, S.↗
DOE OSTI2016

DETECTION OF PHOSPHORUS, SULPHUR, AND ZINC IN THE CARBON-ENHANCED METAL-POOR STAR BD+44 493

The carbon-enhanced metal-poor star BD+44°493 ([Fe/H] = −3.9) has been proposed as a candidate second-generation star enriched by metals from a single Pop III star. We report the first detections of P and S and the second detection of Zn in any extremely metal-poor carbon-enhanced star, using new spectra of BD+44°493 collected by the Cosmic Origins Spectrograph on the Hubble Space Telescope . We derive [P/Fe] = −0.34 ± 0.21, [S/Fe] = +0.07 ± 0.41, and [Zn/Fe] = −0.10 ± 0.24. We increase by 10-fold the number of Si i lines detected in BD+44°493, yielding [Si/Fe] = +0.15 ± 0.22. The [S/Fe] and [Zn/Fe] ratios exclude the hypothesis that the abundance pattern in BD+44°493 results from depletion of refractory elements onto dust grains. Comparison with zero-metallicity supernova (SN) models suggests that the stellar progenitor that enriched BD+44°493 was massive and ejected much less than 0.07 M {sub ⊙} of {sup 56}Ni, characteristic of a faint SN.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2022

Recoil imaging for dark matter, neutrinos, and physics beyond the Standard Model

Recoil imaging entails the detection of spatially resolved ionization tracks generated by particle interactions. This is a highly sought-after capability in many classes of detector, with broad applications across particle and astroparticle physics. However, at low energies, where ionization signatures are small in size, recoil imaging only seems to be a practical goal for micro-pattern gas detectors. This white paper outlines the physics case for recoil imaging, and puts forward a decadal plan to advance towards the directional detection of low-energy recoils with sensitivity and resolution close to fundamental performance limits. The science case covered includes: the discovery of dark matter into the neutrino fog, directional detection of sub-MeV solar neutrinos, the precision study of coherent-elastic neutrino-nucleus scattering, the detection of solar axions, the measurement of the Migdal effect, X-ray polarimetry, and several other applied physics goals. We also outline the R&D programs necessary to test concepts that are crucial to advance detector performance towards their fundamental limit: single primary electron sensitivity with full 3D spatial resolution at the $\sim$100 micron-scale. These advancements include: the use of negative ion drift, electron counting with high-definition electronic readout, time projection chambers with optical readout, and the possibility for nuclear recoil tracking in high-density gases such as argon. We also discuss the readout and electronics systems needed to scale-up such detectors to the ton-scale and beyond.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗
DOE OSTI2016

PET Imaging of Tau Deposition in the Aging Human Brain

Tau pathology is a hallmark of Alzheimer’s disease (AD) but also occurs in normal cognitive aging. In this study, using the tau PET agent 18 F-AV-1451, we examined retention patterns in cognitively normal older people in relation to young controls and AD patients. Age and β-amyloid (measured using PiB PET) were differentially associated with tau tracer retention in healthy aging. Older age was related to increased tracer retention in regions of the medial temporal lobe, which predicted worse episodic memory performance. PET detection of tau in other isocortical regions required the presence of cortical β-amyloid and was associated with decline in global cognition. Furthermore, patterns of tracer retention corresponded well with Braak staging of neurofibrillary tau pathology. In conclusion, the present study defined patterns of tau tracer retention in normal aging in relation to age, cognition, and β-amyloid deposition.

60 APPLIED LIFE SCIENCES↗
DOE OSTI2017

Elucidating structural order and disorder phenomena in mullite-type Al{sub 4}B{sub 2}O{sub 9} by automated electron diffraction tomography

The crystal structure and disorder phenomena of Al{sub 4}B{sub 2}O{sub 9}, an aluminum borate from the mullite-type family, were studied using automated diffraction tomography (ADT), a recently established method for collection and analysis of electron diffraction data. Al{sub 4}B{sub 2}O{sub 9}, prepared by sol-gel approach, crystallizes in the monoclinic space group C2/m. The ab initio structure determination based on three-dimensional electron diffraction data from single ordered crystals reveals that edge-connected AlO{sub 6} octahedra expanding along the b axis constitute the backbone. The ordered structure (A) was confirmed by TEM and HAADF-STEM images. Furthermore, disordered crystals with diffuse scattering along the b axis are observed. Analysis of the modulation pattern implies a mean superstructure (AAB) with a threefold b axis, where B corresponds to an A layer shifted by ½a and ½c. Diffraction patterns simulated for the AAB sequence including additional stacking disorder are in good agreement with experimental electron diffraction patterns. - Graphical abstract: Crystal structure and disorder phenomena of B-rich Al{sub 4}B{sub 2}O{sub 9} studied by automated electron diffraction tomography (ADT) and described by diffraction simulation using DISCUS. - Highlights: • Ab-initio structure solution by electron diffraction from single nanocrystals. • Detected modulation corresponding mainly to three-fold superstructure. • Diffuse diffraction streaks caused by stacking faults in disordered crystals. • Observed streaks explained by simulated electron diffraction patterns.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
DOE OSTI2019

Quantitative Evaluations of Surface Cleanliness in IF Steel Slabs at Unsteady Casting

Macro-inclusions in the surface layer of slabs are mainly responsible for the sliver defects in IF steel sheets. In the present work, macro-inclusions in six kinds of unsteady cast IF steel slabs involving four unsteady states (casting start, ladle change, nozzle change and casting end) in one casting sequence were quantitatively characterized using an automatic inclusion analyzer with a total detection area of 238,048 mm{sup 2}. The cleanliness of corresponding normal slabs was also evaluated as the benchmark study, and the number density (ND) of inclusions > 50 µm was used to describe the surface slab cleanliness. Generally, alumina-based and mold powder inclusions were detected, and the former type was further subdivided into alumina clusters, alumina associated with bubbles, refractory-related alumina, Al-Ti complex oxides and CaO-Al{sub 2}O{sub 3}-MgO. Several large-sized alumina-based inclusions were detected in the normal slabs with an average ND of 0.31 N/cm{sup 2}, although they had very low total oxygen (TO) contents (10~13 ppm). No mold powder inclusions were found in normal slabs. For all the unsteady slabs, alumina-based and mold powder inclusions were both observed, and the percentage of the former kind was ≥ 90 pct. The average density of macro-inclusions for the first slab was 1.621 N/cm{sup 2}, whose cleanliness was much worse than any of the other unsteady slabs. The first slab should be downgraded. For the second slab, the ND of macro-inclusions was 0.385 N/cm{sup 2}, which was still larger than the normal slabs because of the lasting effect of the re-oxidation. For the penultimate, cap-off and SEN changed slabs, the density of macro-inclusions fluctuated from 0.25~0.35 N/cm{sup 2}, which was close to the average level of normal slabs. However, mold flux-originated inclusions were frequently observed in these slabs because of flow pattern variations due to the casting speed change. In terms of the slab during the ladle change process, mold powder inclusions were frequently detected even though the casting speed remained constant. A mold powder entrapment mechanism was proposed, which showed the entrapment occurred owing to the flow pattern change induced by forming/dropping of SEN clogs due to re-oxidation by FeO in the ladle slag and tundish steel temperature variations during the ladle change practice. The severity of powder entrapment and re-oxidation was also given for different kinds of unsteady slabs, which provides a direct guide to treating these slabs in the steel plant.

36 MATERIALS SCIENCE↗
DOE OSTI2024

Severe Convective Storms in Limited Instability Organized by Pattern and Distribution

Abstract Severe convection occurring in high-shear, low-CAPE (HSLC) environments is a common cool-season threat in the southeastern United States. Previous studies of HSLC convection document the increased operational challenges that these environments present compared to their high-CAPE counterparts, corresponding to higher false-alarm ratios and lower probability of detection for severe watches and warnings. These environments can exhibit rapid destabilization in the hours prior to convection, sometimes associated with the release of potential instability. Here, we use self-organizing maps (SOMs) to objectively identify environmental patterns accompanying HSLC cool-season severe events and associate them with variations in severe weather frequency and distribution. Large-scale patterns exhibit modest variation within the HSLC subclass, featuring strong surface cyclones accompanied by vigorous upper-tropospheric troughs and northward-extending regions of instability, consistent with prior studies. In most patterns, severe weather occurs immediately ahead of a cold front. Other convective ingredients, such as lower-tropospheric vertical wind shear, near-surface equivalent potential temperature (θ e ) advection, and the release of potential instability, varied more significantly across patterns. No single variable used to train SOMs consistently demonstrated differences in the distribution of severe weather occurrence across patterns. Comparison of SOMs based on upper and lower quartiles of severe occurrence demonstrated that the release of potential instability was most consistently associated with higher-impact events in comparison to other convective ingredients. Overall, we find that previously developed HSLC composite parameters reasonably identify high-impact HSLC events. Significance Statement Even when atmospheric instability is not optimal for severe convective storms, in some situations they can still occur, presenting increased challenges to forecasters. These marginal environments may occur at night or during the cool season, when people are less attuned to severe weather threats. Here, we use a sorting algorithm to classify different weather patterns accompanying such storms, and we distinguish which specific patterns and weather system features are most strongly associated with severe storms. Our goals are to increase situational awareness for forecasters and to improve understanding of the processes leading to severe convection in marginal environments.

Meteorology & Atmospheric Sciences↗
DOE OSTI2017

Operating displays - new concept: high performance displays - 118

New control rooms in Nuclear Power Plants using digital Distributed Control System (DCS) operated with software displays, are providing thousands of signals to the operating crew. When an event happens, the Flood of information provided to operators could obscure the initiator event increasing the operator response time, work load and complicating the selection of the actions to be performed. There are some initiatives that are trying to minimize the 'avalanche effect' as the alarm engineering filtering and prioritization or diagnostic displays. Likewise, new control rooms are lost the availability to know the plant status just with a quick glance to the panel indicators. Regarding Small Modular Reactors, where in some cases four operators should monitor and control twelve reactors, these problems are even more significant. The challenge is to find a solution, based on current digital systems, that supply information to operators in order to prevent events and take early actions to minimize or avoid any unexpected incident. In order to minimize human errors, Tecnatom has developed a specific set of displays, called 'High Performance Displays' (HPD) based on objectives, work environment limitation, and non-anticipated events. These displays are being design following the HFE standards: applying the NUREG-0711 elements to identify the information that they have to content and the NUREG-0700 to design the interface. The function of these displays is monitoring the plant situation in a way that the operators are able to recognize any potential event at a simple glance but controlling thousands of signals through pattern recognition, symmetries, regular polygons and colors. The objective of the HPD is to provide an integrated function minimizing the tunnel effect and reduce the workload during the diagnosis phase. Moreover, HPD enhance operators to take the right actions to anticipate the response to any event, even avoiding it, if possible This paper analyzes how HPD's have been design as well as presents the results of a preliminary validation of their capabilities. The preliminary validation is a reduce validation in a full scope simulator running two representative scenarios of abnormal and emergency operation. The analysis is focused on the first stage of the event, i.e. the detection phase, HPD's have been installed in a generic full scope simulator of a nuclear power plant, digital controlled. Both scenarios have been performed by two different operator crews. The first operator shift has worked with the conventional human machine interface, that is, displays similar to the ones currently installed in existing nuclear power plant with digital control. The second crew, reproduce the same scenarios but with HPD available. The studio collects preliminary data in order to compare results, draw lesson learned from the experience to improve HPD design, and find solutions in terms of reducing human errors, human workload, and increase the availability of the plant. (authors)

22 GENERAL STUDIES OF NUCLEAR REACTORS↗
DOE OSTI2017

Long-term pattern and magnitude of soil carbon feedback to the climate system in a warming world

In a 26-year soil warming experiment in a mid-latitude hardwood forest, we documented changes in soil carbon cycling to investigate the potential consequences for the climate system. We found that soil warming results in a four-phase pattern of soil organic matter decay and carbon dioxide fluxes to the atmosphere, with phases of substantial soil carbon loss alternating with phases of no detectable loss. Several factors combine to affect the timing, magnitude, and thermal acclimation of soil carbon loss. These include depletion of microbially accessible carbon pools, reductions in microbial biomass, a shift in microbial carbon use efficiency, and changes in microbial community composition. Our results support projections of a long-term, self-reinforcing carbon feedback from mid-latitude forests to the climate system as the world warms.

Science & Technology - Other Topics↗
DOE OSTI2019

Application health monitoring for extreme-scale resiliency using cooperative fault management

Resiliency is and will be a critical factor in determining scientific productivity on current and exascale supercomputers, and beyond. Applications oblivious to and incapable of handling transient soft and hard errors could waste supercomputing resources or, worse, yield misleading scientific insights. In this work, we introduce a novel application-driven silent error detection and recovery strategy based on application health monitoring. Our methodology uses application output that follows known patterns, as indicators of an application's health and knowledge that violation of these patterns could be indication of faults. Information from system monitors that report hardware and software health status is used to corroborate faults. Collectively, this information is used by a fault coordinator agent to take preventive and corrective measures by applying computational steering to an application between checkpoints. This cooperative fault management system uses the Fault Tolerance Backplane as a communication channel. The benefits of this framework are demonstrated with two real application case studies, molecular dynamics, and quantum chemistry simulations, on scalable clusters with simulated memory and I/O corruptions. Lastly, the developed approach is general and can be easily applied to other applications.

97 MATHEMATICS AND COMPUTING↗
DOE OSTI2025

Understanding Oxide–Metal Interactions During Hot Isostatic Pressing to Diffusion Bond Aluminum Alloy 6061 Plates

The interaction between Mg, Si, and Al 2 O 3 during hot isostatic pressing diffusion bonding of aluminum alloy 6061 (AA6061) plates was investigated through thermodynamic calculations and experimental microstructural characterization. Thermodynamic calculations as functions of temperature, pressure, and composition revealed that the interaction among Mg, Si, and Al 2 O 3 yields Mg 2 Si and either MgO + Al or MgAl 2 O 4 + Al, facilitating the reduction of Al 2 O 3 and allowing Al/Al metallic bonds to form. Total pressure variation had a negligible influence on the oxygen partial pressure, and consequently, the reaction product formation. Oxygen partial pressure variation as a function of temperature and initial amount of Al 2 O 3 determined the formation of either MgO or MgAl 2 O 4 . Experimental Hot Isostatic Pressure (HIP) bonding at 723 K and 833 K under a constant pressure of 1017 atm documented the cooling rate-dependent formation of β–Mg 2 Si precipitates. High-resolution transmission electron microscopy imaging and selected area electron diffraction patterns verified the formation of β–Mg 2 Si and MgO at the interface but did not detect MgAl 2 O 4 . In conclusion, findings from this study clarify the role of thermochemical interactions in oxide disruption and bonding mechanisms during HIP diffusion bonding of AA6061 and provide guidance for optimizing joining processes for monolithic nuclear fuel assemblies.

11 - NUCLEAR FUEL CYCLE AND FUEL MATERIALS↗
DOE OSTI2025

Roadmap for Photonics with 2D Materials

Triggered by advances in atomic-layer exfoliation and growth techniques, along with the identification of a wide range of extraordinary physical properties in self-standing films consisting of one or a few atomic layers, two-dimensional (2D) materials such as graphene, transition metal dichalcogenides (TMDs), and other van der Waals (vdW) crystals now constitute a broad research field expanding in multiple directions through the combination of layer stacking and twisting, nanofabrication, surface-science methods, and integration into nanostructured environments. Photonics encompasses a multidisciplinary subset of those directions, where 2D materials contribute remarkable nonlinearities, long-lived and ultraconfined polaritons, strong excitons, topological and chiral effects, susceptibility to external stimuli, accessibility, robustness, and a completely new range of photonic materials based on layer stacking, gating, and the formation of moiré patterns. These properties are being leveraged to develop applications in electro-optical modulation, light emission and detection, imaging and metasurfaces, integrated optics, sensing, and quantum physics across a broad spectral range extending from the far-infrared to the ultraviolet, as well as enabling hybridization with spin and momentum textures of electronic band structures and magnetic degrees of freedom. The rapid expansion of photonics with 2D materials as a dynamic research arena is yielding breakthroughs, which this Roadmap summarizes while identifying challenges and opportunities for future goals and how to meet them through a wide collection of topical sections prepared by leading practitioners.

2D materials↗
DOE OSTI2014

Global assessment of trends in wetting and drying over land

Changes in the hydrological conditions of the land surface have substantial impacts on society1,2. Yet assessments of observed continental dryness trends yield contradicting results3,4,5,6,7. The concept that dry regions dry out further, whereas wet regions become wetter as the climate warms has been proposed as a simplified summary of expected8,9,10 as well as observed10,11,12,13,14 changes over land, although this concept is mostly based on oceanic data8,10. Here we present an analysis of more than 300 combinations of various hydrological data sets of historical land dryness changes covering the period from 1948 to 2005. Each combination of data sets is benchmarked against an empirical relationship between evaporation, precipitation and aridity. Those combinations that perform well are used for trend analysis. We find that over about three-quarters of the global land area, robust dryness changes cannot be detected. Only 10.8% of the global land area shows a robust ‘dry gets drier, wet gets wetter’ pattern, compared to 9.5% of global land area with the opposite pattern, that is, dry gets wetter, and wet gets drier. We conclude that aridity changes over land, where the potential for direct socio-economic consequences is highest, have not followed a simple intensification of existing patterns.

Geology↗
DOE OSTI2019

Wide Distribution of Phage That Infect Freshwater SAR11 Bacteria

Fonsibacter (LD12 subclade) is among the most abundant bacterioplankton in freshwater ecosystems. These bacteria belong to the order Pelagibacterales (SAR11) and are related to Pelagibacter (marine SAR11), which dominates many marine habitats. Although a few Pelagibacter phage (Pelagiphage) have been described, no phage that infect Fonsibacter have been reported. In this study, we describe two groups of Podoviridae phage that infect Fonsibacter. A complete Fonsibacter genome containing a prophage was reconstructed from metagenomic data. A circularized and complete genome related to the prophage, referred to as uv-Fonsiphage-EPL (lysogenic strategy), shows high similarity to marine Pelagiphage HTVC025P. Additionally, we reconstructed three complete genomes and one draft genome of phage related to marine Pelagiphage HTVC010P and predicted a lytic strategy. The similarity in codon usage and cooccurrence patterns of HTVC010P-related phage and Fonsibacter suggested that these phage infect Fonsibacter. Similar phage were detected in Lake Mendota, Wisconsin, where Fonsibacter is also present. A search of related phage revealed the worldwide distribution of some genotypes in freshwater ecosystems, suggesting their substantial role in shaping indigenous microbial assemblages and influence on biogeochemical cycling. However, the uv-Fonsiphage-EPL and one group of HTVC010P-related phage have a more limited distribution in freshwater ecosystems. Overall, the findings provide insights into the genomic features of phage that infect Fonsibacter and expand understanding of the ecology and evolution of these important bacteria. Fonsibacter represents a significant microbial group of freshwater ecosystems. Although the genomic and metabolic features of these bacteria have been well studied, no phage infecting them has been reported. In this study, we reconstructed complete genomes of Fonsibacter and infecting phage and revealed their close relatedness to the phage infecting marine SAR11 members. Also, we illustrated that phage that infect Fonsibacter are widely distributed in freshwater habitats. In summary, the results contribute new insights into the ecology and evolution of Fonsibacter and phage.

59 BASIC BIOLOGICAL SCIENCES↗