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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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At least 577 records · Page 32
All sourcesNASA NTRSDOE OSTI
DOE OSTI2019

Channelrhodopsin-2 Function is Modulated by Residual Hydrophobic Mismatch with the Surrounding Lipid Environment

Channelrhodopsin-2 (ChR2) is a light-gated ion channel that conducts cations of multiple valencies down the electrochemical gradient. This light-gated property has made ChR2 a popular tool in the field of optogenetics, allowing for the spatial and temporal control of excitable cells with light. A central aspect of protein function is the interaction with the surrounding lipid environment. To further explore these membrane-protein interactions, we demonstrate the role of residual hydrophobic mismatch (RHM) as a mechanistically important component of ChR2 function. We combined computational and functional experiments to understand how RHM between the lipid environment and ChR2 alters the structural and biophysical properties of the channel. Analysis of our results revealed significant RHM at the intracellular/lipid interface of ChR2 from a triad of residues. The resulting energy penalty is substantial and can be lowered via mutagenesis to evaluate the functional effects of this change in lipid-protein interaction energy. The experimental measurement of channel stability, conductance and selectivity resulting from the reduction of the RHM energy penalty showed changes in progressive H+ permeability, kinetics and open-state stability, suggesting how the modulation of ChR2 by the surrounding lipid membrane can play an important biological role and contribute to the design of targeted optogenetic constructs for specific cell types.

Richards, Ryan↗
DOE OSTI2022

Integration of Electromagnetic Geophysics Forward Simulation in Coupled Flow and Geomechanics for Monitoring a Gas Hydrate Deposit Located in the Ulleung Basin, East Sea, Korea

We investigate the feasibility of electromagnetic (EM) geophysics methods to detect the dissociation of gas hydrate specifically from a gas hydrate deposit located in the Ulleung Basin, East Sea, Korea via an integrated flow-geomechanics-EM geophysics simulation. To this end, coupled flow and geomechanics simulation is first performed with the multiple porosity model employed, where a mixed formulation with the finite volume (FV) and finite element (FE) methods are taken for the flow and geomechanics, respectively. From the saturation and porosity fields obtained from the coupled flow and geomechanics, the electrical conductivity model is established for the EM simulation. Solving the partial differential equation of electrical diffusion which is linearized using the 3D finite element method (FEM), the EM fields are then computed. For numerical experiments, particularly two approaches in the configuration for the EM methods are compared in this contribution: the surface-to-surface and the surface-to-borehole methods. When the surface-to-surface EM method is employed, the EM is found to be less sensitive, implying low detectability. Especially for the short term of production, the low detectability is attributed to the similarity of electrical resistivity between the dissociated gas (CH4) and hydrate as well as the specific dissociation pattern within the intercalated composites of the field. On the other hand, when the surface-to-borehole EM method is employed, its sensitivity to capture the produced gas flow is improved, confirming its detectability in monitoring gas flow. Hence, the EM geophysics simulation integrated with coupled flow and geomechanics can be a potential tool for monitoring gas hydrate deposits.

depressurization↗
DOE OSTI2024

Using Gamification to Enhance Mastery of Network Security Concepts

Gamification has proven to be effective in engaging and encouraging people to work towards and achieve goals. Many students struggle to focus on schoolwork, due to a lack of interest, lack of understanding, or other factors unique to the student. Applying gamification elements to education can help engage these students in learning their course material and help them excel academically. This study examines the effectiveness of using gamification techniques to enhance the learning experience in college Computer Science courses. A video game application is utilized to review and reinforce cybersecurity concepts that students have already been taught in class. Previous work has been made on a prototype game build that teaches about ARP (Address Resolution Protocol) components. The focus of this study is to refine and develop the structure of the prototype into a more interactive and enjoyable format with non-competitive and captivating activities that allow students to study at their own pace. An updated version of the game was created that focused on reaching a balance between education and entertainment. The game was used by students enrolled in a cybersecurity class, where pre-survey, post-survey and a focus group interview were conducted to determine how effective the updated version is compared to the current build, in addition to how effective the gamification method is regarding student retention of taught material. The pre-survey and post-survey results revealed an increase in interest and mastery of cybersecurity concepts as a result of playing the game. Students found value in the game as both a method of reviewing material taught in class and an entertaining and engaging game. These results show potential in using gamification in cybersecurity and education.

Hilliard, Kevin↗
DOE OSTI2019

Mobile Spectrometer Comparison to TCCON Field Campaign Report

During the summer of 2018, a field campaign took place to help characterize off-the-shelf portable solar-viewing Fourier-transform spectroscope (FTS) instruments (EM27/SUN). These instruments retrieve greenhouse gas (GHG) abundances from direct solar spectra (Wunch et al. 2011). The campaign included assistance and instrumentation from the University of Toronto, Environment and Climate Change Canada, and the California Institute of Technology and took place at the U.S. Department of Energy Atmospheric Radiation Measurement (ARM) Southern Great Plains (SGP) observatory from July 22 to July 28, 2018. The instruments were sited on the outside landing of the guest trailer (Figure 1) and were set up and taken down each morning and afternoon. During the campaign, we had minor inconveniences like overheating computers, but the experience involving the ARM site itself held nothing out of the ordinary for July in Oklahoma.

greenhouse gases, Southern Great Plains, Total Col↗
DOE OSTI2022

Personalized learning via task load optimization

A method for providing task load-optimized computer-generated training experiences to a user of a training system that includes: a display, a training simulator, a prediction program (ML1), and a training optimization program (ML2). In response to receiving a predicted optimal task load, ML2 provides a first training experience recommendation related to the training content and/or training conditions that, if utilized in providing a training experience to the user, is predicted to result in the predicted actual task load of the user equaling the predicted optimal task load. In response to receiving biometric information or performance metric information, ML1 determines the predicted actual task load. If the predicted actual task load does not match the predicted optimal task load, ML2 provides a second training experience recommendation and a second training experience is provided where at least one of the training content or the training conditions is changed.

Bertolli, Michael G.↗
DOE OSTI2017

CFD Simulation of Bubble Growing Under a Downward Facing Surface

The heat removing of downward facing surface is an important issue in many areas, including nuclear safety, solar storage system and electronic cooling devices. Therefore, the characteristic and heat removal capability of downward facing boiling were investigated by many experiments in recent years. Among these studies, the thickness of bubble is considered as an important parameter. The increasing of bubble thickness will increase the thermal resistance of cooling process and reduce the cooling ability. In order to focus on the dynamics of bubble thickness, Das et al. injected air into sodium dodecyl sulphate (SDS) solution through a nozzle under the horizontal downward facing surface. The bubble will be formed by the air injection and kept under the horizontal plate. The diameter of nozzle, horizontal plate and SDS solution tank are 2 mm, 20 mm and 30 mm, respectively. The growing processing and the stable thickness of the bubble were recorded in the experiment. Basing on the conditions of Das's experiment, the appropriate computational fluid dynamics (CFD) simulation was conducted. The growing process and the stable thickness of bubble under difference contact angle are predicted by CFD in this study.

42 ENGINEERING↗
DOE OSTI2024

Towards Autonomous Experiments by Connecting High Performance Microscopy with High Performance Computing

The digitization of controls, data, and analysis in microscopy is bringing the idea of autonomous microscopes closer to reality than ever before. Automated transmission electron microscopy (TEM) is already fairly routine for some experiments the only require simple repetitive tasks such as imaging biological macromolecules for single particle cryoEM [1], tilt series for electron tomography [2], and movies for crystallography [3]. The vast majority of TEM experiments are conducted completely by human operators who choose the regions of interest, optimize experimental parameters, and make decisions about data quality visually during an experiment. The field is still a long way from having completely autonomous TEMs that can adapt to sample difficulties and tune experimental parameters based on data quality and desired experimental outcomes. Part of the issue is the lack of capability for feeding information learned from on-line, live data analysis back into the on-going experiment [4]. Furthermore, this presentation will discuss current capabilities for large scale data reduction and analysis using high performance computing (i.e. supercomputing) and progress towards developing a true feed-back loop that places data analysis and theory in the experimental loop.

97 MATHEMATICS AND COMPUTING↗
DOE OSTI2025

PQML: Enabling the Predictive Reproducibility on NISQ Machines for Quantum ML Applications

Quantum computing represents a groundbreaking approach to high-performance computing. In recent years, quantum computers have progressed from single-qubit processors to systems boasting over 400 qubits. The presence of such a large number of qubits offers significant advantages, including enhanced computational speed—a capability beyond classical computing methods. However, the current stage of quantum computing is referred to as the noisy intermediate-scale quantum (NISQ) era. The existence of noise in this era presents challenges in testing quantum computing applications, leading to considerable variance in application results. Furthermore, the diverse noise characteristics observed across different machines exacerbate this issue, complicating the selection of the appropriate machine for application execution. In response to these challenges, we introduce our Predictive Quantum Machine Learning (PQML) tool. This tool is designed to predict outcomes when executing identical quantum machine learning applications—specifically, a critical suite of variational quantum algorithms—across various quantum computers during the NISQ era. This effort relies on data collected over a 12-month period. To the best of our knowledge, this study represents the first attempt to ensure reproducibility across quantum computers for complex circuits. Additionally, we have developed a model capable of forecasting the accuracy of quantum computers for variational quantum algorithms, with a particular emphasis on quantum machine learning as a case study.

Senapati, Priyabrata [Kent State University]↗
DOE OSTI2024

Non-smooth Bayesian optimization in tuning scientific applications

Tuning algorithmic parameters to optimize the performance of large, complicated computational codes is an important problem involving finding the optima and identifying regimes defined by non-smooth boundaries in black-box functions. Within the Bayesian optimization framework, the Gaussian process surrogate model produces smooth mean functions, but functions in the tuning problem are often non-smooth, which is exacerbated by the fact that we usually have limited sequential samples from the black-box function. Here, motivated by these issues encountered in tuning, we propose a novel Gaussian process model called a clustered Gaussian process (cGP), where the components are dynamically updated by clustering. In our studies, the performance of cGP can be better than stationary GPs in nearly 90% of the experiments and better than non-stationary GPs in nearly 70% of the repeated experiments while requiring less computational cost. cGP provides a novel approach for dynamic GP, computes more efficiently than recursive partitioning, and discovers non-smoothness regimes. We provide extensive experiments including high-performance computing (HPC) and industrial simulation functions to show the effectiveness of our methods.

97 MATHEMATICS AND COMPUTING↗
DOE OSTI2023

Why Dissolving Salt in Water Decreases Its Dielectric Permittivity

The dielectric permittivity of salt water decreases on dissolving more salt. For nearly a century, this phenomenon has been explained by invoking saturation in the dielectric response of the solvent water molecules. Herein, we employ an advanced deep neural network (DNN), built using data from density functional theory, to study the dielectric permittivity of sodium chloride solutions. Notably, the decrease in the dielectric permittivity as a function of concentration, computed using the DNN approach, agrees well with experiments. Detailed analysis of the computations reveals that the dominant effect, caused by the intrusion of ionic hydration shells into the solvent hydrogen-bond network, is the disruption of dipolar correlations among water molecules. Accordingly, the observed decrease in the dielectric permittivity is mostly due to increasing suppression of the collective response of solvent waters.

74 ATOMIC AND MOLECULAR PHYSICS↗
DOE OSTI2021

Big PanDa Workflow Management on Titan for High Energy and Nuclear Physics and for Future Extreme Scale Scientific Application

Over a three year period, from 2016-2019, this project demonstrated the scientific benefits of integrating the Titan supercomputer at Oak Ridge Leadership Computing Facility into traditional high throughput grid based distributed computing systems managed by PanDA, the workflow management system used for the execution of all distributed computing applications by the ATLAS experiment at the Large Hadron Collider. PanDA manages millions of batch jobs daily at hundreds of clusters worldwide on request by thousands of physicist users, and processes more than an exabyte of data annually using grid middleware. High levels of operational use of Titan was sustained by PanDA in order to meet the physics goals of ATLAS. The success of this project led to the use of other supercomputers worldwide by ATLAS, and to the adoption of PanDA by other experiments and other scientists. Multiple innovative operational and computer science research goals were achieved supporting the use of supercomputers for scientific domains with large scale distributed data and distributed processing needs.

97 MATHEMATICS AND COMPUTING↗
DOE OSTI2022

DUNE Software and High Performance Computing

DUNE, like other HEP experiments, faces a challenge related to matching execution patterns of our production simulation and data processing software to the limitations imposed by modern high-performance computing facilities. In order to efficiently exploit these new architectures, particularly those with high CPU core counts and GPU accelerators, our existing software execution models require adaptation. In addition, the large size of individual units of raw data from the far detector modules pose an additional challenge somewhat unique to DUNE. Here we describe some of these problems and how we begin to solve them today with existing software frameworks and toolkits. We also describe ways we may leverage these existing software architectures to attack remaining problems going forward. This whitepaper is a contribution to the Computational Frontier of Snowmass21.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗
DOE OSTI2021

Monte Carlo Simulations of the Water Draining Experiment of Giacint Critical Assembly

The MCNP6 computer program has been successfully extended to simulate reactor dynamics problems with moving parts of the geometries. Different from the dynamic method developed in other Monte Carlo codes, a movement scheme has been developed to account for the geometrical parts motion during the particle random walk. The MCNP6 computer program has been used to simulate two transient experiments of the Giacint critical assembly. The MCNP6 calculated total neutron flux was compared with that from the Serpent simulation. An excellent agreement was obtained between the results of the two Monte Caro computer programs. The MCNP6 calculated total neutron flux was also compared with the two measured transients. The MCNP6 results predicted a faster transient than the experimental data. The MCNP6 transient simulation was improved with an adjusted geometrical model which shifts the fuel rods slightly to match the measured reactivity worth due to the drained water. (c) 2021 Elsevier Ltd. All rights reserved.

MCNP, Moving Geometries, Monte Carlo Reactor Trans↗
DOE OSTI2026

Data for "Photoinduced Chemomimetic Biocatalysis for Enantioselective Intermolecular Radical Conjugate Addition"

Exploiting nature’s catalysts for non-natural transformations that are inaccessible to chemocatalysis is highly desirable but challenging. On the one hand, the widespread nicotinamide-dependent oxidoreductases have not been utilized for single-electron-transfer-induced bimolecular cross-couplings; on the other, the addition of catalytic asymmetric radical conjugate to terminal alkenes remains a challenge owing to strong racemic background reaction and unselective termination of prochiral radical species. Here we report a chemomimetic biocatalysitic approach for construction of alpha-carbonyl stereocentres via an unnatural intermolecular conjugate addition of N-(acyloxy)phthalimides-derived radicals with acceptor-substituted terminal alkenes, by combination of visible-light excitation and nicotinamide-dependent ketoreductases (KREDs). Based on protein crystal structure, we engineered KREDs via a semi-rational mutagenesis strategy to improve reaction outcomes with a small and high-quality variants library. Mechanistic investigations combining wet experiments, crystallographic studies and computational simulations demonstrate that the repurposed biocatalyst can suppress racemic background reaction and unselected side reactions, yielding enantioselectivity that is challenging to achieve by chemocatalysis.

Catalysis↗
DOE OSTI2017

Statistical Analyses of Post Irradiation Experiments of the BWR Forsmark

Computer codes which are to be used in nuclear safety research need to be validated prior to their application. For depletion codes, this validation can be done using data from post irradiation experiments (PIE). These experiments consist of a radiochemical analysis of small parts of a fuel rod (FR), which has been irradiated in a nuclear power plant as part of a fuel assembly (FA). This analysis allows the deduction of the isotopic composition of nuclides important for the desired application case. In addition the operation history at the sample location needs to be known and reported with the analysis results. In our work, we perform uncertainty and sensitivity analyses of a model based on a sample from the boiling water reactor (BWR) Forsmark-3 in order to deduce the influence of uncertain system parameters on the nuclide composition of the depleted fuel. In a second step we compare the resulting uncertainties of the nuclide densities with the deviation between their calculated and experimental values. The goal is to obtain quantitative uncertainty data which can be accounted for in a validation procedure. We use the Monte Carlo sampling approach, i.e. repeating the model calculation using statistically varied sets of the uncertain input parameters and analyzing the distributions of the result values statistically. BWR depletion calculations are especially demanding due to the increased complexity and heterogeneity compared to pressurized water reactors (PWR): extensively variable enrichments, complex FA geometries, partial length FRs, strong axially varying moderator density and the common use of gadolinium as burnable absorber in some of the FRs. However, the precise and correct calculation of BWR-depletion is extremely important in view of a possible application in burnup credit for BWR FAs. Therein credit is taken for the reduced reactivity of spent fuel due to the depletion of {sup 235}U for transport and intermediate or final storage.

11 NUCLEAR FUEL CYCLE AND FUEL MATERIALS↗
DOE OSTI2020

Climate Sensitivity and the Direct Effect of Carbon Dioxide in a Limited-Area Cloud-Resolving Model

Even in a small domain, it can be prohibitively expensive to run cloud-resolving greenhouse gas warming experiments due to the long equilibration time. Here, a technique is introduced that reduces the computational cost of these experiments by an order of magnitude: instead of fixing the carbon dioxide concentration and equilibrating the sea surface temperature (SST), this technique fixes the SST and equilibrates the carbon dioxide concentration. Using this approach in a cloud-resolving model of radiative–convective equilibrium (RCE), the equilibrated SST is obtained as a continuous function of carbon dioxide concentrations spanning 1 ppmv to nearly 10 000 ppmv, revealing a dramatic increase in equilibrium climate sensitivity (ECS) at higher temperatures. This increase in ECS is due to both an increase in forcing and a decrease in the feedback parameter. In addition, the technique is used to obtain the direct effects of carbon dioxide (i.e., the rapid adjustments) over a wide range of SSTs. Overall, the direct effect of carbon dioxide offsets a quarter of the increase in precipitation from warming, reduces the shallow cloud fraction by a small amount, and has no impact on convective available potential energy (CAPE).

Romps, David M.↗