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At least 577 records · Page 32

Northern Brazil Agriculture: Measuring Soybean Yields in Northern Brazil During El Niño-Southern Oscillation Conditions to Evaluate Trends in Agricultural Production and Support Crop Forecasting, 1984 – 2023

As one of the largest agricultural exporters in the world, Brazil’s crop productivity is highly influential to the world’s food supply. Crop productivity across Brazil is heavily influenced by climatic factors, such as the El Niño-Southern Oscillation (ENSO), which drives spatially heterogenous effects on growing conditions. To understand the relationship between ENSO conditions and staple crop productivity, the team used 1984 – 2023 climatic data and vegetation indices for four Brazilian states: Bahia, Mato Grosso, Pará, and Tocantins. The team focused on soybean growing areas in each state derived from annual land use/land cover classifications. Monthly mean Normalized Difference Vegetation Index (NDVI) per state were calculated using multispectral imagery from the Landsat 5 Thematic Mapper (TM), Landsat 7 Enhanced Thematic Mapper Plus (ETM+), and Landsat 8 Operational Land Imagery (OLI) sensors. In addition, the team used crop production indices, ENSO anomalies, temperature, and precipitation data in this study. The team found that although monthly ENSO anomaly did have a positive relationship between temperature and a slight negative relationship with precipitation, ENSO and monthly soy NDVI were not significantly correlated. Results find no association between ENSO conditions and NDVI in the study area at the state level spatial resolution during the study period. Furthermore, the team found that there was no correlation between cumulative growing season soy NDVI and detrended soy production yield for this study region at the spatial and temporal scale of the analysis. Findings from this project will be used by the United States Department of Agriculture’s Foreign Agriculture Service to inform crop productivity forecasting.

remote sensing↗

Northern Colorado Water Resources: Using Earth Observations to Assess Relationships between Snowpack and Wildfires for Water Utility Management

In recent years, wildfires in the western U.S. have increased in size, frequency, and severity. Colorado is no exception to this trend, with many recent wildfires raising concerns. The Cameron Peak and East Troublesome Fires, the two largest recorded wildfires in Colorado history, burned over 400,000 acres in 2020. Wildfires pose a significant threat to high-elevation ecosystems, especially in terms of disturbances to watershed resources. Colorado’s annual water supply is dependent upon the melt and runoff of high-elevation snowpack, thus understanding wildfire effects is crucial. This project partnered with Northern Water, a water management company in Colorado, to explore fire impacts on Colorado Front Range watersheds and water supply forecasts. We investigated the use of remote sensing to study the influences of wildfire on snow depth, as Northern Water had previously relied on field-based observations of snowpack for their water supply forecasts. This project utilized airborne LiDAR data from Airborne Snow Observatories, Inc., Landsat 8 OLI derived products, as well as in situ snow survey data from Colorado State University to assess and model changes in snowpack over time. We uncovered key drivers of change in snowpack such as burn severity and snow zone and created a random forest model to determine and investigate their relationships. Despite temporal data availability limitations, analysis also showed that remotely-sensed snow depth measurements were strongly correlated with in situ snow depth measurements, revealing the accuracy and feasibility of using remote sensing technologies to study landscape-scale snowpack characteristics for water utility management purposes.

airborne LiDAR↗

Solar Flares

Solar flares accelerate both ions and electrons to high energies, and their X-ray and gamma-ray signatures not only probe the relationship between their respective acceleration, but also allow for the measurement of accelerated and ambient abundances. RHESSI observations have shown a striking close linear correlation of gamma-ray line fluence from accelerated ions > approx.20 MeV and bremsstrahlung emission from relativistic accelerated electrons >300 keV, when integrated over complete flares, suggesting a common acceleration mechanism. SMM/GRS observations, however, show a weaker correlation, and this discrepancy might be associated with previously observed electron-rich episodes within flares and/or temporal variability of gamma-ray line fluxes over the course of flares. We use the latest RHESSI gamma-ray analysis techniques to study the temporal behavior of the RHESSI flares, and determine what changes can be attributed to an evolving acceleration mechanism or to evolving abundances.

Shih, Albert↗

Temporal Variability of Ion Acceleration and Abundances in Solar Flares

Solar flares accelerate both ions and electrons to high energies, and their X-ray and gamma-ray signatures not only probe the relationship between their respective acceleration, but also allow for the measurement of accelerated and ambient abundances. RHESSI observations have shown a striking close linear correlation of gamma-ray line fluence from accelerated ions greater than approximately 20 MeV and bremsstrahlung emission from relativistic accelerated electrons greater than 300 keV, when integrated over complete flares, suggesting a common acceleration mechanism. SMM/GRS observations, however, show a weaker correlation, and this discrepancy might be associated with previously observed electron-rich episodes within flares and/or temporal variability of gamma-ray line fluxes over the course of flares. We use the latest RHESSI gamma-ray analysis techniques to study the temporal behavior of the RHESSI flares, and determine what changes can be attributed to an evolving acceleration mechanism or to evolving abundances. We also discuss possible explanations for changing abundances.

Shih, Albert↗

Temporal Variability of Ion Acceleration and Abundances in Solar Flares

solar flares accelerate both ions and electrons to high energies, and their x-ray and gamma-ray signatures not only probe the relationship between their respective acceleration, but also allow for the measurement of accelerated and ambient abundances. RHESSI observations have shown a striking close linear correlation of gamma-ray line fluence from accelerated ions > approx 20 MeV and bremsstrahlung emission from relativistic accelerated electrons >300 kev, when integrated over complete flares, suggesting a common acceleration mechanism. SMM/GRS observations, however, show a weaker correlation, and this discrepancy might be associated with previously observed electron-rich episodes within flares and/or temporal variability of gamma-ray line fluxes over the course of flares. We use the latest RHESSI gamma-ray analysis techniques to study the temporal behavior of the RHESSI flares, and determine what changes can be attributed to an evolving acceleration mechanism or to evolving abundances. We also discuss possible explanations for changing abundances.

Shih, Albert Y.↗

Spatio-Temporal Surrogates for Interaction of a Jet with High Explosives: Part I - Analysis with a Small Sample Size

Computer simulations, especially of complex phenomena, can be expensive, requiring high-performance computing resources. Often, to understand a phenomenon, multiple simulations are run, each with a different set of simulation input parameters. These data are then used to create an interpolant, or surrogate, relating the simulation outputs to the corresponding inputs. When the inputs and outputs are scalars, a simple machine learning model can suffice. However, when the simulation outputs are vector valued, available at locations in two or three spatial dimensions, often with a temporal component, creating a surrogate is more challenging. In this report, we use a two-dimensional problem of a jet interacting with high explosives to understand how we can build high-quality surrogates. The characteristics of our data set are unique - the vector-valued outputs from each simulation are available at over two million spatial locations; each simulation is run for a relatively small number of time steps; the size of the computational domain varies with each simulation; and resource constraints limit the number of simulations we can run. We show how we analyze these extremely large data-sets, set the parameters for the algorithms used in the analysis, and use simple ways to improve the accuracy of the spatio-temporal surrogates without substantially increasing the number of simulations required.

97 MATHEMATICS AND COMPUTING↗

Radioisotope Identification with List-Mode Gamma Ray Data: A rigorous assessment on the value of temporal information applied to radioisotope identification.

This work explores the potential of utilizing temporal data from gamma-ray detectors, known as list-mode data, to enhance radioisotope identification. Traditional identification methods, which rely on full gamma-ray spectrum analysis, often require long dwell times and struggle with “confuser” sources, or spectra with similarly spaced spectral peaks. We hypothesize that by leveraging the probabilistic nature of nuclear decay and the time-encoded information from decay sequences and interactions with surrounding materials, we can improve classification accuracy over static spectral analysis. This research rigorously examines the temporal content of list-mode data through exploratory data analysis via correlation discovery and information theory. We further propose a basic classification model that can utilize spectral or temporal data (or both) to determine if the incorporation of temporal information can improve radioisotope identification. The findings suggest that the temporal information present in list-mode gamma-ray data has merit and should be further investigated.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

Towards adaptive, streaming analysis of x-ray tomography data

Temporal and spatial resolution of chemical imaging methodologies such as x-ray tomography are rapidly increasing, leading to more complex experimental procedures and fast growing data volumes. Automated analysis pipelines and big data analytics are becoming essential to effectively evaluate the results of such experiments. Offering those data techniques in an adaptive, streaming environment can further substantially improve the scientific discovery process, by enabling experimental control and steering based on the evaluation of emerging phenomena as they are observed by the experiment. Pacific Northwest National Laboratory (PNNL)’ Chemical Imaging Initiative (CII - http://imaging.pnnl.gov/ ) has worked since 2011 towards developing a framework that allows users to rapidly compose and customize high throughput experimental analysis pipelines for multiple instrument types. The framework, named ‘Rapid Experimental Analysis’ (REXAN) Framework [1], is based on the idea of reusable component libraries and utilizes the PNNL developed collaborative data management and analysis environment ‘Velo’, to provide a user friendly analysis and data management environment for experimental facilities. This article will, discuss the capabilities established for X-Ray tomography, discuss lessons learned, and provide an overview of our more recent work in the Analysis in Motion Initiative (AIM - http://aim.pnnl.gov/ ) at PNNL to provide REXAN capabilities in a streaming environment.

analysis framework↗

Apparatus and amendment of wind turbine blade impact detection and analysis

A multisensory system provides both temporal and spatial coverage capacities for auto-detection of bird collision events. The system includes an apparatus having a first circuitry to capture and store a series of images or video of a blade of a wind turbine; and a memory to store the images from the first circuitry. The apparatus also has one or more sensors to continuously sense vibration of the blade or for acoustic recordings; and a second circuitry to analyze the sensor data stream and/or the series of images or video to identify a cause of the vibration and to trigger the camera(s). A communication interface transmits data from the second circuitry to another device, wherein the second circuitry applies artificial intelligence or machine learning to control sensitivity of the one or more sensors.

Johnston, Matthew↗

Lack of Transmission of Foot-and-Mouth Disease Virus From Persistently Infected Cattle to Naïve Cattle Under Field Conditions in Vietnam

Foot-and-mouth disease (FMD), caused by FMD virus (FMDV; Aphthovirus, Picornaviridae), is a highly contagious and economically important disease of clovenhoofed domestic livestock and wildlife species worldwide. Subsequent to the clinical phase of FMD, a large proportion of FMDV-infected ruminants become persistently infected carriers, defined by detection of FMDV in oropharyngeal fluid (OPF) samples 28 days or more post-infection. The goal of this prospective study was to characterize the FMD carrier state in cattle subsequent to natural infection under typical husbandry practices in Vietnam. Ten persistently infected cattle on eight farms in the Long An province in southern Vietnam were monitored by monthly screening of serum and oropharyngeal fluid samples for 12 months. To assess transmission from FMDV carriers, 16 naïve cattle were intentionally brought into direct contact with the persistently infected animals for 6 months, and were monitored by clinical and laboratory methods. The restricted mean duration of the FMD carrier state was 27.7 months, and the rate of decrease of the proportion of carrier animals was 0.03 per month. There was no evidence of transmission to naïve animals throughout the study period. Additionally, there was no detection of FMDV infection or seroconversion in three calves born to carrier animals during the study. The force of infection for carrier-to-contact transmission was 0 per month, with upper 95% confidence limit of 0.064 per month. Phylogenetic analysis of viral protein 1 (VP1) coding sequences obtained from carriers indicated that all viruses recovered in this study belonged to the O/ME-SA/PanAsia lineage, and grouped phylogenetically with temporally and geographically related viruses. Analysis of within-host evolution of FMDV, based upon full-length open reading frame sequences recovered from consecutive samples from one animal, indicated that most of the nonsynonymous changes occurred in Lpro, VP2, and VP3 protein coding regions. This study suggests that the duration of FMDV persistent infection in cattle may be longer than previously recognized, but the risk of transmission is low. Additional novel insights are provided into within-host viral evolution under natural conditions in an endemic setting.

59 BASIC BIOLOGICAL SCIENCES↗

Temporal Coupling of Subsurface and Surface Soil CO 2 Fluxes: Insights From a Nonsteady State Model and Cross-Wavelet Coherence Analysis

Inferences about subsurface CO 2 fluxes often rely on surface soil respiration (R soil ) estimates because directly measuring subsurface microbial and root respiration (collectively, CO 2 production, S Total ), is difficult. To evaluate how well R soil serves as a proxy for S Total , we applied the nonsteady state DEconvolution of Temporally varying Ecosystem Carbon componenTs model (0.01-m vertical resolution), using 6-hourly data from a Wyoming grassland, in six simulations that cross three soil types (clay, sandy loam, and sandy) with two depth distributions of subsurface biota. We used cross-wavelet coherence analysis to examine temporal coherence (localized linear correlation) and offsets (lags) between S Total and R soil and fluxes and drivers (e.g., soil temperature and moisture). Cross-wavelet coherence revealed higher coherence between fluxes and drivers than linear regressions between concurrent variables. Soil texture and moisture exerted the strongest controls over coherence between CO 2 fluxes. Coherence between CO 2 fluxes in all soil types was strong at short (~1 day) and long periods (>8 days), but soil type controlled lags, and rainfall events decoupled the fluxes at periods of 1–8 days for several days in sandy soil, up to 1 week in sandy loam, and for a month or more in clay soil. Concentrating root and microbial biomass nearer the surface decreased lags in all soil types and increased coherence up to 10% in clay soil. The assumption of high temporal coherence between R soil and S Total is likely valid in dry, sandy soil, but may lead to underestimates of short-term STotal in semiarid grasslands with fine-grained and/or wet soil.

54 ENVIRONMENTAL SCIENCES↗

Theoretical analysis on the measurement errors of local 2D DIC: Part I temporal and spatial uncertainty quantification of displacement measurements

This study presents a theoretical uncertainty quantification of displacement measurements by subset-based 2D-digital image correlation. A generalized solution to estimate the random error of displacement measurement is presented. The obtained solution suggests that the random error of displacement measurements is determined by the image noise, the summation of the intensity gradient in a subset, the subpixel part of displacement, and the interpolation scheme. The proposed method is validated with virtual digital image correlation tests.

2D-DIC↗

Analysis of direct numerical simulation data of a Mach 4.5 transitional boundary-layer flow

This paper describes the creation, by temporal direct numerical simulation and the analysis based on the Reynolds stress transport equations, of a high-quality data set that represents the laminar-turbulent transition of a high-speed boundary-layer flow. Following Pruett and Zang (1992), and with the help of algorithmic refinements, the evolution of an axial, Mach 4.5 boundary-layer flow along a hollow cylinder is simulated numerically. Favre-averaged Reynolds stress transport equations are derived in generalized curvilinear coordinates and are then specialized to the cylindrical geometry at hand. Reynolds stresses and various turbulence quantities, such as turbulent kinetic energy and turbulent Mach number, are calculated from the numerical data at various stages of the transition process. The kinetic energy 'budgets' are constructed from the transport equations. Various contributing terms for the evolution of kinetic energy, like the rates of production and dissipation, transport, and diffusion, are presented. The compressible dissipation rate is small in comparison with the solenoidal dissipation rate for all times. The pressure-dilatation term is of the same order of magnitude as the compressible dissipation rate.

Dinavahi, Surya P. G.↗

Structural diverseness of neurons between brain areas and between cases

The cerebral cortex is composed of multiple cortical areas that exert a wide variety of brain functions. Although human brain neurons are genetically and areally mosaic, the three-dimensional structural differences between neurons in different brain areas or between the neurons of different individuals have not been delineated. Here we report a nanometer-scale geometric analysis of brain tissues of the superior temporal gyrus of schizophrenia and control cases. The results of the analysis and a comparison with results for the anterior cingulate cortex indicated that (1) neuron structures are significantly dissimilar between brain areas and that (2) the dissimilarity varies from case to case. The structural diverseness was mainly observed in terms of the neurite curvature that inversely correlates with the diameters of the neurites and spines. The analysis also revealed the geometric differences between the neurons of the schizophrenia and control cases. The schizophrenia cases showed a thin and tortuous neuronal network compared with the controls, suggesting that the neuron structure is associated with the disorder. The area dependency of the neuron structure and its diverseness between individuals should represent the individuality of brain functions.

60 APPLIED LIFE SCIENCES↗

Integrated Biophysical Modeling and Image Analysis: Application to Neuro-Oncology

Central nervous system (CNS) tumors come with vastly heterogeneous histologic, molecular, and radiographic landscapes, rendering their precise characterization challenging. The rapidly growing fields of biophysical modeling and radiomics have shown promise in better characterizing the molecular, spatial, and temporal heterogeneity of tumors. Integrative analysis of CNS tumors, including clinically acquired multi-parametric magnetic resonance imaging (mpMRI) and the inverse problem of calibrating biophysical models to mpMRI data, assists in identifying macroscopic quantifiable tumor patterns of invasion and proliferation, potentially leading to improved (a) detection/segmentation of tumor subregions and (b) computer-aided diagnostic/prognostic/predictive modeling. This article presents a summary of (a) biophysical growth modeling and simulation,(b) inverse problems for model calibration, (c) these models' integration with imaging workflows, and (d) their application to clinically relevant studies. We anticipate that such quantitative integrative analysis may even be beneficial in a future revision of the World Health Organization (WHO) classification for CNS tumors, ultimately improving patient survival prospects.

60 APPLIED LIFE SCIENCES↗

Spatiotemporal changes of seismic attenuation caused by injected CO 2 at the Frio-II pilot site, Dayton, TX, USA

A continuous active source seismic monitoring data set was collected with crosswell geometry during CO 2 injection at the Frio-II brine pilot, near Liberty, TX. Previous studies have shown that spatiotemporal changes in the P wave first arrival time reveal the movement of the injected CO 2 plume in the storage zone. To further constrain the CO 2 saturation, particularly at higher saturation levels, we investigate spatial-temporal changes in the seismic attenuation of the first arrivals. The attenuation changes over the injection period are estimated by the amount of the centroid frequency shift computed by local time-frequency analysis. We observe that (1) at receivers above the injection zone seismic attenuation does not change in a physical trend; (2) at receivers in the injection zone attenuation sharply increases following injection and peaks at specific points varying with distributed receivers, which is consistent with observations from time delays of first arrivals; then, (3) attenuation decreases over the injection time. The attenuation change exhibits a bell-shaped pattern during CO 2 injection. Under Frio-II field reservoir conditions, White's patchy saturation model can quantitatively explain both the P wave velocity and attenuation response observed. We have combined the velocity and attenuation change data in a crossplot format that is useful for model-data comparison and determining patch size. Our analysis suggests that spatial-temporal attenuation change is not only an indicator of the movement and saturation of CO 2 plumes, even at large saturations, but also can quantitatively constrain CO 2 plume saturation when used jointly with seismic velocity.

58 GEOSCIENCES↗

Spatial and temporal dynamics of the microbial community in the Hanford unconfined aquifer

Pyrosequencing analysis of 16S rRNA genes was used to study temporal dynamics of groundwater Bacteria and Archaea over 10 months within 3 well clusters separated by ~30 m and located 250 m from the Columbia River on the Hanford Site, WA. Each cluster contained 3 wells screened at different depths ranging from 10 to 17 m that differed in hydraulic conductivities. Representative samples were selected for analyses of prokaryotic 16S and eukaryotic 18S rRNA gene copy numbers. Temporal changes in community composition occurred in all 9 wells over the 10 month sampling period. However, there were particularly strong effects near the top of the water table when the seasonal rise in the Columbia River caused river water intrusion at the top of the aquifer. The occurrence and disappearance of some microbial assemblages (such as Actinobacteria ACK-M1) were correlated to river water intrusion. This seasonal impact on microbial community structure was greater in the shallow saturated zone than deeper in the aquifer. Spatial and temporal patterns for several 16S rRNA gene operational taxonomic units associated with particular physiological functions (e.g.methane oxidizers and metal reducers) suggests dynamic changes in fluxes of electron donors and acceptors over an annual cycle. In addition, temporal dynamics in eukaryotic 18S rRNA gene copies and the dominance of protozoa in 18S clone libraries suggest that bacterial community dynamics could be affected not only by the physical and chemical environment, but also by top-down biological control.

community structure↗

Fractionation of Palliative Radiation Therapy for Bone Metastases in Ontario: Do Practice Guidelines Guide Practice?

Purpose: To evaluate the effect of a provincial practice guideline on the fractionation of palliative radiation therapy for bone metastases (PRT.B) in Ontario. Methods and Materials: The present retrospective study used electronic treatment records linked to Ontario's population-based cancer registry. Hierarchical multivariable regression analysis was used to evaluate temporal trends in the use of single fractions (SFs), controlling for patient-related factors associated with the use of SFs. Results: From 1984 to 2012, 43.9% of 161,835 courses of PRT.B were administered as SFs. The percentage of SF courses was greater for older patients (age <50 years, 39.8% vs age >80 years, 52.5%), those with a shorter life expectancy (survival >12 months, 36.9% vs < 1 month, 53.6%), and those who lived farther from a radiation therapy center (<10 km, 42.1% vs > 50 km, 47.3%). The percentage of SFs to spinal fields was lower than that to other skeletal sites (31.5% vs 57.1%). The percentage of SFs varied among the cancer centers (range, 26.0%-67.8%). These differences were all highly significant in the multivariable analysis (P<.0001). In 2004, Cancer Care Ontario released a practice guideline endorsing the use of SFs for uncomplicated bone metastases. The rate of use of SFs increased from 42.3% in the pre-guideline period (1999-2003) to 52.6% in the immediate post-guideline period (2004-2007). However, it subsequently decreased again to 44.0% (2009-2012). These temporal trends were significant after controlling for patient-related factors in the multivariable analysis (P<.0001). Large intercenter variations in the use of SFs persisted after publication of the guideline. Conclusions: The publication of an Ontario practice guideline endorsing the use of SF PRT.B was associated with only a transient increase in the use of SFs in Ontario and did little to reduce intercenter variations in fractionation.

62 RADIOLOGY AND NUCLEAR MEDICINE↗