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CSRI Summer Proceedings 2020

The Computer Science Research Institute (CSRI) brings university faculty and students to Sandia for focused collaborative research on Department of Energy (DOE) computer and computational science problems. The institute provides an opportunity for university researchers to learn about problems in computer and computational science at DOE laboratories. Participants conduct leading-edge research, interact with scientists and engineers at the laboratories, and help transfer results of their research to programs at the labs. Some specific CSRI research interest areas are: scalable solvers, optimization, adaptivity and mesh refinement, graph-based, discrete, and combinatorial algorithms, uncertainty estimation, mesh generation, dynamic load-balancing, virus and other malicious-code defense, visualization, scalable cluster computers, data-intensive computing, environments for scalable computing, parallel input/output, advanced architectures, and theoretical computer science. The CSRI Summer Program is organized by CSRI and typically includes the organization of a weekly seminar series and the publication of a summer proceedings. In 2020, the CSRI summer program was executed completely virtually; all student interns worked from home, due to the COVID-19 pandemic.

97 MATHEMATICS AND COMPUTING↗

Lessons from the COVID Era and Visions for the Future

In December 2020, the U.S. Department of Energy Office of Science convened a virtual Roundtable of its 27 operating scientific user facilities to discuss facility challenges and lessons learned during the COVID-19 pandemic as well as facility responses, best practices, and innovations that could be adopted going forward. Roundtable participants included facility staff, users, and user executive committee chairs. This report summarizes their discussions, which encompassed topics such as user research and facility operations in virtual and physically distanced contexts; user training and engagement; computation, data, and network resources; and crosscutting issues.

29 ENERGY PLANNING, POLICY, AND ECONOMY↗

Advanced Cost-Effective Coal-Fired Rotating Detonation Combustor for High Efficiency Power Generation

Coal-based detonation as a means of heat addition in power generation devices is a revolutionary “out of the box” technology concept, wherein it is theoretically possible to achieve an increase in total pressure across the combustor as opposed to a loss of available energy as is the case in conventional combustion systems. Detonation is a revolutionary technology concept of pressure gain combustion that exploits pressure rise from the combustion process to augment high flow momentum and pressures. Recognizing that pressure gain combustion has become a topic of elevated national interest, high energetic modes (exergy) pressure gain combustion (PGC) systems are required. Pressure gain combustion is a key enabling technology for maintaining technological superiority in the development of advanced power generation systems. Pressure gain combustion is an innovative scheme of turbulent combustion that considerably increases thermodynamic cycle efficiencies (~10-20%). This project extends the State-of-the-Art by providing the first direct experimental and computational data of operability dynamics and performance characterization data and create the first validated Coal-Fired RDC investigations. Coal-based RDC is an innovative revolutionary technology that would result in high efficiency power generation and reduced of harmful emissions. Also, the fundamental and open source nature of the project will benefit a broader scientific and industry audience who will be able to utilize the outcomes of this project for advancing the coal-fired RDC power generation development.

01 COAL, LIGNITE, AND PEAT↗

Durable Mn-Based PGM-Free Catalysts for Polymer Electrolyte Membrane Fuel Cells

This proposed project aims to develop and evaluate novel manganese based, nitrogen-derived, PGM-free electrocatalysts (denoted as Mn-N-C) to fully address the membrane electrolyte assemblies (MEA)’s ionomer degradation issue resulting from iron. Four thrusts will be pursed in this proposed project. First, advanced first-principles computation methods will be employed to accelerate the rational catalyst design and synthesis. Second, an effective hydro-gel method will be used to maximize atomic Mn active sites embedded in carbon matrix. Next, state-of-the art methods in fuel cell companies will be used to fabricate MEAs containing the Mn-N-C catalysts. Finally, industry standards will be rigorously followed to evaluate fuel cell performance and durability of the Mn-N-C catalysts. With successful completion of the project, it is expected that the following outcomes will be achieved. (1) A set of MEAs containing the Mn-N-C catalysts and with active area large than 50 cm 2 for independent testing, (2) testing results demonstrating that the MEAs of Mn-N-C catalysts have mass activity of 0.044 A/cm 2 at 0.9 VIR-free and H 2 /air performance of 0.50 V at 1.0 A/cm 2 ; (3) fundamental understanding of the composition-structure-property relation of the PGM-free Mn- N-C catalysts, and (4) computational data, measurement data, and publications deposited into the database of ElectroCat Consortium.

08 HYDROGEN↗

Oxidation Behavior and Property Degradation of Nuclear Graphites

During its multidecade operation in the core of nuclear reactors, graphite components are subjected to aggressive and continuous exposure to a high field of ionizing and neutron irradiation, high temperature, and various types of present and postulated chemical attacks. High density, high crystallinity polygranular synthetic graphite is unique among other materials for its extraordinary capacity of resisting and adapting to the aggression inflicted by high temperature, high energy neutron bombardment and ionizing gamma radiation. But, as a carbonaceous material, even though of very high purity, graphite is reactive towards common oxidizing agents: oxygen, carbon dioxide, water. Safe operation of HTGRs relies, among other aspects, on engineered safeguard systems for efficient and continuous protection of graphite components against oxidation. Graphite oxidation behavior was, and continues to be, an important direction of theoretical and experimental research, engineering analyses, models and simulations, and design and safety regulations. The avalanche of publications, reports, experimental data, computer codes, and regulatory documents related to oxidation behavior of nuclear graphite is now accelerating to new levels, prompted by the increased interest for nuclear energy as a clean, carbon-free energy source. Even though public’s perception of nuclear energy advantages may still be influenced by the memories of past accidents of nuclear reactors from generations II and III, the community of informed scientists and engineers, regulators and statemen knows that generation IV of nuclear reactors is designed at very high safety standards, doubled by great advances of scientific knowledge and technological progress. One of routes of these recent advances is directed at better understanding of graphite oxidation behavior, its relationship with graphite manufacturing and microstructural properties, along with the effects of various environmental factors and process variables. Together, the recent progress in manufacturing, properties characterization, and modeling of intricated physical and chemical processes that concur to the oxidation behavior led to development of powerful simulation codes able to analyze various scenarios of normal operation and hypothetical off-normal events, and thus to clearly specify the allowable parameters envelopes for the designers, constructors, and operators of current and future modular HTGRs. This review begins with an introduction on manufacturing methods, structure, and properties of nuclear graphite, including basic requirements that this specialty graphite type must satisfy for nuclear use. It continues with a chapter on environmental effects on nuclear graphite, where emphasis is placed less on irradiation and much more on oxidation phenomena, their safety implications, and the basic traits of chronic and acute oxidation by air (oxygen) and water (humidity, steam). Particular attention is placed on the three graphite grades of interest for this document (IG-110, NBG-18, PCEA). A chapter on properties degradation induced by oxidation follows, with focus on density, dimensional, and mechanical properties changes. The next chapter is intended as a brief review of various approaches used for modeling of graphite oxidation behavior. It summarizes the progress of oxidation models, from the early attempts to complex computational approaches interfaced with specialized computer codes designed for nuclear reactor simulations. Last, a list is presented of knowledge gaps where more research is needed. A short summary concludes the review.

36 MATERIALS SCIENCE↗

Applying the ATOM drug discovery platform to small-molecule antivirals (Annual Report)

The objective of this project is to advance our understanding of the ML approaches needed to find the most potent inhibitor through an AI guided search that simultaneously optimizes for limited off-target safety activity and desirable pharmacokinetics (PK) properties. The methods will be tested for inhibiting SARS-CoV-2 activity through inhibition of the main protease as a demonstration, but the methodology will be developed to apply to any biothreat target using a small-molecule protein binding-based intervention, with limited experimental data. Computational experiments are conducted using our ATOM generative molecular design (GMD) loop software, which is the implementation of our AI/ML drug design pipeline.

59 BASIC BIOLOGICAL SCIENCES↗

Technoeconomic Analysis of Infrastructure Buildout Scenarios

The success of CCUS deployment in the southeast will depend on the optimized pipeline network from CO 2 point sources to geologic sinks for CO 2 storage. An optimal pipeline framework will reduce both environmental impacts and pipeline building cost. However, finding an optimal pipeline/transport infrastructure design is a non-trivial task and requires simultaneous usage of large volumes of data, computational resources, and a state-of-the-art simulator. Such a transport infrastructure model must consider point sources for CO 2 capture and associated volumes, sinks for CO 2 storage, and transportation from source to sink via pipeline networks. These considerations must be addressed simultaneously and systemically in an optimization process, in which a defined objective function (i.e., capital, variable CO 2 capture, transport, and storage cost function) is required to be minimized with the consideration of practical constraints (e.g., CO 2 flow through pipelines is less than the maximum capacity). Although optimization has been widely used in subsurface resources production and CO 2 storage, its application in large scale CCUS infrastructure design is rarely reported in the literature. SimCCS, developed by Los Alamos National Laboratory, is an open-source CCUS pipeline infrastructure design toolset that facilitates the optimization of pipeline infrastructure networks.

99 GENERAL AND MISCELLANEOUS↗

Rapid Computational Identification of Therapeutic Targets for Pathogens

Biological threats continue to persist and evolve as an important challenge to national security. There are multiple ways in which novel viral pathogens could emerge to pose a serious threat to human health. This project developed a pathogen target identification tool that can rapidly respond to a novel or emerging viral biological threat. A set of computational tools were developed that provide detailed information on the newly sequenced genes, their protein products and the drug target sites for the proteins that are best suited for biological countermeasure development. Three key innovations were developed in the project. 1) Development of a new extensive database of protein pocket structures with structure-based search algorithms to rapidly link novel protein targets with the complete collection of previously experimentally solved protein structures. 2) A novel clustering pipeline was introduced to group matching structures and associated small-molecule binding ligands into a consensus protein pocket with the associated small-molecule chemotypes predicted to fit in the pocket site. The matching experimentally solved structures were used to inform the value of different target sites. 3) Where there are viral protein targets with pockets structurally matched to similar human proteins, a biological knowledge graph, which links molecular interactions with human disease, was used to further assess the potential negative impact of a viral protein target with similarities to human proteins that could have important off target side effects. In total, the project produced a new resource for rapid and detailed assessment of promising targets for countermeasures, reflecting the ongoing wet lab, clinical, and computational data being collected. These capabilities will improve the ability to respond to a biological threat in multiple domains.

59 BASIC BIOLOGICAL SCIENCES↗

Diaspora: Resilience-enabling services for science from HPC to edge

Scientific applications of interest to DOE must increasingly engage distributed resources (e.g., instruments, remote computers, data stores, edge devices) and deliver more stringent levels of service (e.g., uninterrupted processing of experiment data streams). In such systems, state is distributed and components can fail in many ways, often silently, making application resilience a major concern. Addressing the resilience needs of such applications requires methods for gaining knowledge of resources and applications and for translating that knowledge into action. We are working on addressing these needs in the context of multi-messenger astronomy, where detecting and responding to unusual transient events in multiple cosmic messengers (gravitational wave, electromagnetic, high- energy particles) from different instruments leads to a federated learning problem.

47 OTHER INSTRUMENTATION↗

Characterization of Rotating Detonation Engine Injector Response Using Laser-Induced Fluorescence

In this work, rotating detonation engine (RDE) fuel injector response was characterized in a lab-scale linear testing platform. The experimental design consists of a linear extrusion of an RDE cross section and allows rapid interchanging of modular, 3D printed inlet geometries. An array of helium jets was established within a channel, and a single combustion-driven shock pulse was presented at one end. The subsequent injector interruption and recovery were quantified using high-speed acetone planar-laser-induced fluorescence (PLIF). A quartz wall provided optical access to the channel and the injector response was visualized at up to 30 kHz. Three dynamic pressure transducers allowed the shock strength to be quantified along the length of the channel. Timescales associated with jet interruption and recovery were determined by analysis of instantaneous PLIF images and considered in conjunction with the dynamic pressure measurements. Finally, results are presented as a function of pertinent nondimensional parameters and compared with available experimental and computational data in a full, research-scale RDE.

42 ENGINEERING↗

Beam-swinging facilities for the Goonhilly satellite-communication aerial

The mode of satellite tracking adopted at the Goonhilly earth station is to steer the aerial primarily by means of predicted data computed from the satellite orbital parameters and to superimpose, during the passage of the satellite, corrections to remove any prediction errors or aberrations due the transmission path. Predictions have proved to be highly accurate for satellites having a high mass to projected area ratio orbiting at altitudes at which air drag is very small; hence the corrections are small and infrequent.

COMMUNICATIONS SATELLITE↗