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At least 577 records · Page 32

Impact of vertical and seasonal variation in leaf traits on simulating soybean canopy photosynthesis via 1D and 3D modeling

Accurate modeling of photosynthesis is crucial for predicting crop productivity and quantifying the carbon cycle in agroecosystems. Leaf traits are essential inputs for modeling canopy photosynthesis. Yet, many existing models still use fixed plant functional type (PTF)-based values to parameterize leaf traits under a big-leaf or two-big-leaf assumption, neglecting their vertical profiles and seasonal changes. This simplification may introduce significant uncertainties in estimating gross primary productivity (GPP). In this study, we simulated soybean GPP and tested the effects of vertical and seasonal variation in three key leaf photosynthetic traits: the maximum carboxylation rate at 25 °C (Vcmax 25 ), leaf chlorophyll content (LCC), and leaf mass per area (LMA) in the 1D-SCOPE and 3D-Helios models. Weekly field measurements were conducted during the growing season of 2024 to support the simulation. We designed ten leaf trait parameterization schemes by incorporating different combinations of vertical profiles and seasonal changes, while assuming homogeneous canopy architecture in both models. Our results revealed that Vcmax 25 vertical and seasonal variation had the strongest influence on simulated GPP in both 1D and 3D models, while LCC and LMA effects were minimal. Particularly, the scheme with an empirically parameterized Vcmax 25 profile achieved comparable performance to the scheme with the measured Vcmax 25 profile. Both 1D-SCOPE and 3D-Helios accurately modeled GPP (SCOPE: R 2 = 0.87, Bias = 0.55 µmol m⁻² s⁻¹; Helios: R 2 = 0.9, Bias = 0.22 µmol m⁻² s⁻¹) under the most complex scheme, and their responses to vertical and seasonal variation in leaf traits were consistent, demonstrating the robustness of our findings. Based on our findings, we propose a scalable framework for parameterizing leaf traits to improve GPP simulations. This study contributes to improving the representation of leaf trait dynamics in canopy-level photosynthesis models, potentially enhancing our ability to predict crop productivity and understand agroecosystem carbon dynamics.

54 ENVIRONMENTAL SCIENCES↗

Coupled Lake‐Atmosphere‐Land Physics Uncertainties in a Great Lakes Regional Climate Model

Abstract This study develops a surrogate‐based method to assess the uncertainty within a convective permitting integrated modeling system of the Great Lakes region, arising from interacting physics parameterizations across the lake, atmosphere, and land surface. Perturbed physics ensembles of the model during the 2018 summer are used to train a neural network surrogate model to predict lake surface temperature (LST) and near‐surface air temperature (T2m). Average physics uncertainties are determined to be 1.5C for LST and T2m over land, and 1.9C for T2m over lake, but these have significant spatiotemporal variations. We find that atmospheric physics parameterizations alone are the dominant sources of uncertainty (45%–53%), while lake and land parameterizations account for 33% and 38% of the uncertainty of LST and T2m over land respectively. Interactions of atmosphere physics parameterizations with those of the land and lake contribute to an additional 13%–17% of the total variance. LST and T2m over the lake are more uncertain in the deeper northern lakes, particularly during the rapid warming phase that occurs in late spring/early summer. The LST uncertainty increases with sensitivity to the lake model's surface wind stress scheme. T2m over land is more uncertain over forested areas in the north, where it is most sensitive to the land surface model, than the more agricultural land in the south, where it is most sensitive to the atmospheric planetary boundary and surface layer scheme. Uncertainty also increases in the southwest during multiday temperature declines with higher sensitivity to the land surface model.

54 ENVIRONMENTAL SCIENCES↗

Downward Convective Moisture Transport Dominated by a Few Overshooting Clouds in Marine and Continental Shallow Convection

Abstract In a previous study (Xiao et al., 2023, https://doi.org/10.1029/2022ms003526 ), we found that ignoring the moist convective downdrafts associated with overshooting clouds in parameterizations can lead to significant biases in the simulated depth and liquid water content of a shallow cloud layer. In this study, we seek to better quantify the properties of the clouds responsible for these moist downdrafts to help improve shallow convection parameterizations. We apply a 3‐D cloud‐tracking algorithm to large‐eddy simulations (LESs) of marine and continental shallow convection. We find that top 1% and 2% of the tracked cloud population ranked by lifetime‐mean cloud‐base mass flux can explain 90%–95% of the total downward moisture transport in the upper cloud layer whereas top 10%–20% is required to explain 90%–95% of the total upward moisture transport near mean cloud base. The vertical structure of the clouds in the top 1% and 2% (the overshooting “deep mode”) is also distinctively different from that of the rest of the cloud population (the “shallow mode”). Shallow convection parameterizations need to capture accurately the properties and convective transports of the clouds in both the deep and shallow modes. To do that, our results suggest that mass‐flux parameterizations need to (a) accurately predict the size and number of the deep‐mode clouds and (b) explicitly represent overshooting cloud updrafts and associated moist downdrafts.

54 ENVIRONMENTAL SCIENCES↗

maranasgroup/yeastsMFA

The parameterization of kinetic models requires measurement of fluxes and/or metabolite levels for a base strain and a few genetic perturbations thereof. Unlike stoichiometric models that are mostly invariant to the specific strain, it remains unclear whether kinetic models constructed for different strains of the same species have similar or significantly different kinetic parameters. This important question underpins the applicability range and prediction limits of kinetic reconstructions. To this end, herein we parameterize two separate large-scale kinetic models using K-FIT with genome-wide coverage corresponding to two distinct strains of Saccharomyces cerevisiae: CEN.PK 113-7D strain (model k-sacce306-CENPK), and growth-deficient BY4741 (isogenic to S288c; model k-sacce306-BY4741). The metabolic network for each model contains 306 reactions, 230 metabolites, and 119 substrate-level regulatory interactions. The two models (for CEN.PK and BY4741) recapitulate, within one standard deviation, 77% and 75% of the fitted dataset fluxes, respectively, determined by 13C metabolic flux analysis for wild-type and eight single-gene knockout mutants of each strain. Strain-specific kinetic parameterization results indicate that key enzymes in the TCA cycle, glycolysis, and arginine and proline metabolism drive the metabolic differences between these two strains of S. cerevisiae. Our results suggest that although kinetic models cannot be readily used across strains as stoichiometric models, they can capture species-specific information through the kinetic parameterization process.

Dinh, Hoang↗

Assessing the Impact of a Forest Canopy on Near-Surface Wind Statistics

Representing the forest canopy in atmospheric numerical models should improve simulated winds within and above the canopy up to a few hundred meters above the ground. Here, in this study, we implement a forest canopy parameterization into the Weather Research and Forecasting (WRF) Model in a large-eddy simulation (LES) mode by applying drag forces across multiple layers within the canopy height. We use unique observations from the Lidar Experiments for Assessing Flow over Forests (LEAFF) field campaign at the Wind River Experimental Forest (WREF) in the U.S. Pacific Northwest to evaluate model performance. In a 2-day case study, the canopy parameterization improved wind predictions both within and above the canopy, particularly during the daytime and at finer grid resolution. Without it, winds were frequently overpredicted above the canopy. Similarly, derived quantities such as the wind shear index also yielded estimates closer to observations with the canopy parameterization implemented. These findings suggest that representing the canopy using drag forces alone can improve simulated mean winds up to 200 m above the surface. Furthermore, second-order statistical moments of wind were more sensitive to canopy density than first-order moments, especially during the daytime. This increased sensitivity and the improved daytime performance in wind speed—evidenced by the lowest bias from observations (3% compared to 20% over diurnal cycle)—imply that winds above the canopy layer are strongly influenced by how well turbulence above the canopy is modeled. The results of this study can serve as a foundation for parameterizing forest canopy effects in coarser weather forecast models.

Energy - Wind↗

Quantifying the Role of Ocean Dynamics in SST Variability across GCMs and Observations

Abstract Midlatitude SSTs forced by mesoscale oceanic processes can affect the large-scale atmosphere, pointing to the ocean’s crucial role outside the tropics. Previous studies have shown oceanic mesoscale processes’ effect on global and regional climate variability. This study quantifies the local contribution of ocean dynamics to mixed-layer temperature across the globe by directly estimating the ocean heat flux divergence resolved by state-of-the-art ocean reanalysis, eddy-resolving, and eddy-parameterized versions of two U.S. national climate models and indirectly from air–sea flux satellite-based estimates. Our results show that the eddy-resolving climate simulations resolve mixed-layer temperature variances that are larger and closer to those inferred from observations than both their eddy-parameterized counterparts and ECCO over much of the extratropics. The observations and the eddy-resolving models indicate a more significant role of ocean dynamics in the mixed-layer temperature variability than the surface fluxes over most extratropics compared to their eddy-parameterized versions. A frequency domain analysis shows that the better-resolved ocean mesoscale and thermal gradients enhance the variance over a time scale from 2 months to 30 years. Results show agreement in the ocean’s contribution among satellite-based estimates, ocean reanalysis products, and ocean eddy-resolving simulations. At the same time, differences emerge for ECCO and the eddy-parameterized models, suggesting that surface fluxes account for a larger fraction of the mixed-layer temperature variability in most of the extratropics.

Siqueira, L.↗

Effects of dynamic heat fluxes on model climate sensitivity Meridional sensible and latent heat fluxes

The high- and low-latitude radiative-dynamic (HLRD) climatic model of Wang et al. (1984) was used to study the effect of meridional heat (MH) fluxes on climate changes caused by increases of CO2 abundance and solar constant variations. However, the empirical MH parameterization of the HLRD model was replaced by physically based parameterization, which gives separate meridional sensible and latent heat fluxes and provides a complete representation of the dependence of the flux on the mean temperature field. Both parameterization methods yielded about the same changes in global mean surface temperature and ice line, and both produced only small changes in meridional temperature gradient, although the latter were even smaller with the physically based parameterizations. At any latitude, the hemispheric mean surface temperature, rather than MH fluxes, dominates the surface temperature changes.

Gutowski, W. J., Jr.↗

An approach to simultaneous system design. I - Semialgebraic geometric methods

This paper introduces semialgebraic parameterization as an approach to analyze simultaneous stabilization and pole placement problems. Rational families of plants of a given McMillan degree, that are simultaneously stabilizable by a fixed family of compensators, are parameterized. For a discrete family of plants, the parameterization problem reduces to the simultaneous stabilization or the pole placement problem of a r-tuple of multi input multi output plants by a nonswitching compensator. It is shown that by removing a semialgebraic subset of a proper algebraic set, the 'space of plants' can be decomposed into components that are either simultaneously stabilizable or simultaneously unstabilizable. Under special cases, explicit parameterization of the semialgebraic set is obtained. Finally a necessary condition for the simultaneous stabilization of single input or single output plants is obtained.

Ghosh, B. K.↗

Atmospheric solar heating rate in the water vapor bands

The total absorption of solar radiation by water vapor in clear atmospheres is parameterized as a simple function of the scaled water vapor amount. For applications to cloudy and hazy atmospheres, the flux-weighted k-distribution functions are computed for individual absorption bands and for the total near-infrared region. The parameterization is based upon monochromatic calculations and follows essentially the scaling approximation of Chou and Arking, but the effect of temperature variation with height is taken into account in order to enhance the accuracy. Furthermore, the spectral range is extended to cover the two weak bands centered at 0.72 and 0.82 micron. Comparisons with monochromatic calculations show that the atmospheric heating rate and the surface radiation can be accurately computed from the parameterization. Comparisons are also made with other parameterizations. It is found that the absorption of solar radiation can be computed reasonably well using the Goody band model and the Curtis-Godson approximation.

Chou, Ming-Dah↗

Dependence of marine stratocumulus reflectivities on liquid water paths

Simple parameterizations that relate cloud liquid water content to cloud reflectivity are often used in general circulation climate models to calculate the effect of clouds in the earth's energy budget. Such parameterizations have been developed by Stephens (1978) and by Slingo and Schrecker (1982) and others. Here researchers seek to verify the parametric relationship through the use of simultaneous observations of cloud liquid water content and cloud reflectivity. The column amount of cloud liquid was measured using a microwave radiometer on San Nicolas Island following techniques described by Hogg et al., (1983). Cloud reflectivity was obtained through spatial coherence analysis of Advanced Very High Resolution Radiometer (AVHRR) imagery data (Coakley and Beckner, 1988). They present the dependence of the observed reflectivity on the observed liquid water path. They also compare this empirical relationship with that proposed by Stephens (1978). Researchers found that by taking clouds to be isotropic reflectors, the observed reflectivities and observed column amounts of cloud liquid water are related in a manner that is consistent with simple parameterizations often used in general circulation climate models to determine the effect of clouds on the earth's radiation budget. Attempts to use the results of radiative transfer calculations to correct for the anisotropy of the AVHRR derived reflectivities resulted in a greater scatter of the points about the relationship expected between liquid water path and reflectivity. The anisotropy of the observed reflectivities proved to be small, much smaller than indicated by theory. To critically assess parameterizations, more simultaneous observations of cloud liquid water and cloud reflectivities and better calibration of the AVHRR sensors are needed.

Coakley, James A., Jr.↗

Infrared cooling rate calculations in operational general circulation models - Comparisons with benchmark computations

The performance of several parameterized models is described with respect to numerical prediction and climate research at GFDL, NCAR, and GISS. The radiation codes of the models were compared to benchmark calculations and other codes for the intercomparison of radiation codes in climate models (ICRCCM). Cooling rates and fluxes calculated from the models are examined in terms of their application to established general circulation models (GCMs) from the three research institutions. The newest radiation parameterization techniques show the most significant agreement with the benchmark line-by-line (LBL) results. The LBL cooling rates correspond to cooling rate profiles from the models, but the parameterization of the water vapor continuum demonstrates uncertain results. These uncertainties affect the understanding of some lower tropospheric cooling, and therefore more accurate parameterization of the water vapor continuum, as well as the weaker absorption bands of CO2 and O3 is recommended.

Kiehl, J. T.↗

Surface net solar radiation estimated from satellite measurements - Comparisons with tower observations

A parameterization that relates the reflected solar flux at the top of the atmosphere to the net solar flux at the surface in terms of only the column water vapor amount and the solar zenith angle was tested against surface observations. Net surface fluxes deduced from coincidental collocated satellite-measured radiances and from measurements from towers in Boulder during summer and near Saskatoon in winter have mean differences of about 2 W/sq m, regardless of whether the sky is clear or cloudy. Furthermore, comparisons between the net fluxes deduced from the parameterization and from surface measurements showed equally good agreement when the data were partitioned into morning and afternoon observations. This is in contrast to results from an empirical clear-sky algorithm that is unable to account adequately for the effects of clouds and that shows, at Boulder, a distinct morning to afternoon variation. It is also demonstrated that the parameterization may be applied to irradiances at the top of the atmosphere that have been temporally averaged. The good agreement between the results of the parameterization and surface measurements suggests that the algorithm is a useful tool for a variety of climate studies.

Li, Zhanqing↗

Photodissociation of O2 and H2O in the middle atmosphere: Comparison of numerical methods and impact on model O3 and OH

We have compared three photochemical diurnal models of O3 and OH in the upper stratosphere and mesosphere which use different techniques for calculating the absorption of solar ultraviolet radiation by the O2 Schumann-Runge bands. One model uses a detailed line-by-line representation of the O2 cross section from 1750-2050 A, while the two others use lower resolution, parameterized cross sections. Using the parameterized cross sections, the calculated O3 profiles for both day and night agree with those obtained from the line-by-line model to within 6%. This appears to eliminate inaccuracies in the parameterized O2 cross section as a major cause of previously reported model O3 deficits. A portion of the residual differences from the line-by-line model are attributed to inaccuracies in the calculated H2O photolysis rate. A parameterized H2O cross section is offered which improves the accuracy of this calculation.

Siskind, David E.↗

An algorithm for forecasting mountain wave-related turbulence in the stratosphere

A global mountain wave parameterization for prediction of wave-related displacements and turbulence is described. The parameterization is used with input from National Meteorological Center (NMC) analyses of wind and temperature to examine small-scale disturbances encountered by the National Aeronautics and Space Administration high-altitude ER-2 during the Second Airborne Arctic Stratosphere Experiment (AASE-II). The magnitude and location of observed large wave events are well reproduced. A strong correlation is suggested between patches of moderate turbulence encountered by the ER-2 and locations where breaking mountain waves are predicted by the parameterization. These facts suggest that useful forecasts of global mountain wave activity, including wave-related clear-air turbulence, can be made quickly and inexpensively using our mountain wave parameterization with input from current numerical forecast models.

Bacmeister, Julio T.↗

Observational and Modeling Studies of Clouds and the Hydrological Cycle

Our approach involved validating parameterizations directly against measurements from field programs, and using this validation to tune existing parameterizations and to guide the development of new ones. We have used a single-column model (SCM) to make the link between observations and parameterizations of clouds, including explicit cloud microphysics (e.g., prognostic cloud liquid water used to determine cloud radiative properties). Surface and satellite radiation measurements were used to provide an initial evaluation of the performance of the different parameterizations. The results of this evaluation will then used to develop improved cloud and cloud-radiation schemes, which were tested in GCM experiments.

Somerville, Richard C. J.↗

Cloud Radiation Forcings and Feedbacks: General Circulation Model Tests and Observational Validation

Using an atmospheric general circulation model (the National Center for Atmospheric Research Community Climate Model: CCM2), the effects on climate sensitivity of several different cloud radiation parameterizations have been investigated. In addition to the original cloud radiation scheme of CCM2, four parameterizations incorporating prognostic cloud water were tested: one version with prescribed cloud radiative properties and three other versions with interactive cloud radiative properties. The authors' numerical experiments employ perpetual July integrations driven by globally constant sea surface temperature forcings of two degrees, both positive and negative. A diagnostic radiation calculation has been applied to investigate the partial contributions of high, middle, and low cloud to the total cloud radiative forcing, as well as the contributions of water vapor, temperature, and cloud to the net climate feedback. The high cloud net radiative forcing is positive, and the middle and low cloud net radiative forcings are negative. The total net cloud forcing is negative in all of the model versions. The effect of interactive cloud radiative properties on global climate sensitivity is significant. The net cloud radiative feedbacks consist of quite different shortwave and longwave components between the schemes with interactive cloud radiative properties and the schemes with specified properties. The increase in cloud water content in the warmer climate leads to optically thicker middle- and low-level clouds and in turn to negative shortwave feedbacks for the interactive radiative schemes, while the decrease in cloud amount simply produces a positive shortwave feedback for the schemes with a specified cloud water path. For the longwave feedbacks, the decrease in high effective cloudiness for the schemes without interactive radiative properties leads to a negative feedback, while for the other cases, the longwave feedback is positive. These cloud radiation parameterizations are empirically validated by using a single-column diagnostic model. together with measurements from the Atmospheric Radiation Measurement program and from the Tropical Ocean Global Atmosphere Combined Ocean-Atmosphere Response Experiment. The inclusion of prognostic cloud water produces a notable improvement in the realism of the parameterizations, as judged by these observations. Furthermore, the observational evidence suggests that deriving cloud radiative properties from cloud water content and microphysical characteristics is a promising route to further improvement.

Lee,Wan-Ho↗

Surface Net Solar Radiation Estimated from Satellite Measurements: Comparisons with Tower Observations

A parameterization that relates the reflected solar flux at the top of the atmosphere to the net solar flux at the surface in terms of only the column water vapor amount and the solar zenith angle was tested against surface observations. Net surface fluxes deduced from coincidental collocated satellite-measured radiances and from measurements from towers in Boulder during summer and near Saskatoon in winter have mean differences of about 2 W/sq m, regardless of whether the sky is clear or cloudy. Furthermore, comparisons between the net fluxes deduced from the parameterization and from surface measurements showed equally good agreement when the data were partitioned into morning and afternoon observations. This is in contrast to results from an empirical clear-sky algorithm that is unable to account adequately for the effects of clouds and that shows, at Boulder, a distinct morning to afternoon variation, which is presumably due to the predominance of different cloud types throughout the day. It is also demonstrated that the parameterization may be applied to irradiances at the top of the atmosphere that have been temporally averaged by using the temporally averaged column water vapor amount and the temporally averaged cosine of the solar zenith angle. The good agreement between the results of the parameterization and surface measurements suggests that the algorithm is a useful tool for a variety of climate studies.

Li, Zhanqing↗

Vertical Transport Processes for Inert and Scavenged Species: TRACE-A Measurements

The TRACE-A mission of the NASA DC-8 aircraft made a large-scale survey of the tropical and subtropical atmosphere in September and October of 1992. Both In-situ measurements of CO (G. Sachsen NASA Langley) and aerosol size (J. Browell group, NASA Langley) provide excellent data sets with which to constrain vertical transport by planetary boundary layer mixing and deep-cloud cumulus convection. Lidar profiles of aerosol-induced scattering and ozone (also by Bremen) are somewhat require more subtle interpretation as tracers, but the vertical information on layering largely compensates for these complexities. The reason this DC-8 dataset is so useful is that very large areas of biomass burning over Africa and South America provide surface sources of appropriate sizes with which to characterize vertical and horizontal motions; the major limitation of our source description is that biomass burning patterns move considerably every few days, and daily burning inventories are a matter of concurrent, intensive research. We use the Penn State / NCAR MM5 model in an assimilation mode on the synoptic and intercontinental scale, and assess the success it shows in vertical transport descriptions. We find that the general level of emissions suggested by the climatological approach (Will. Has, U. of Montana) appears to be approximately correct, possibly a bit low, for this October, 1992, time period. Vertical transport in planetary boundary layer mixing to 5.5 kin was observed and reproduced in our simulations. Furthermore we find evidence that Blackader "transilient" or matrix-transport scheme is needed, but may require some adaptation in our tracer model: CO seems to exhibit very high values at the top of the planetary boundary layer, a process that stretches the eddy-diffusion parameterization. We will report on progress in improving the deep convective transport of carbon monoxide: the Grail scheme as we used it at 100 kin resolution did not transport enough material to the upper troposphere. We expect to be able to attribute this to either parameterization reasons (inadequacy of this parameterization at the large 100km scale) or other reasons. Nevertheless, the qualitative nature of deep transport by clouds shows up well in the simulations. As for scavengable species, the simulations predict tens of micrograms per standard cubic meter of smoke aerosol in the boundary layer. In a straightforward illustration of our simple bulk-mass scavenging parameterization, to one or two micrograms per standard cubic meter of smoke aerosol in the free troposphere just above the source regions: very high concentrations for the free troposphere. We expect to report on comparisons of these predictions to a variety of observations.

Chatfield, Robert B.↗