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At least 595 records · Page 33

Chemical structure–property relationships in nanocelluloses

Abstract Nanocelluloses, nanoscale cellulosic particles or fibrils, are an appealing class of nanomaterials with enormous potential for sustainable development. They have great promise to target some of the 17 Sustainable Development Goals outlined by the United Nations. Nanocelluloses are derived from the most abundant biopolymer in the world, cellulose, which have multiple hydroxyl groups on their surface, enabling a vast range of chemical modifications. The interplay between the chemical structure and physicochemical properties of nanocelluloses is crucial to engineering the next generation of green, functional nanomaterials. In this review paper, we provide a comprehensive account of the structure–property relationships in nanocelluloses, which may establish the basis for the design of precision bio‐based materials. Chemical modifications of nanocelluloses, including hydrolysis, oxidation, esterification, amidation, and polymer grafting, provide an array of chemical and physical properties that open opportunities in a diverse spectrum of applications. We review how chemical modifications affect the physicochemical properties of nanocelluloses, such as thermal stability, hydrophobicity, and dispersibility in nonpolar media. Understanding nanocellulose chemical structure–property relationships is integral to the development of sustainable material platforms based on the most renewable biopolymer on earth.

59 BASIC BIOLOGICAL SCIENCES↗

Structural insights into acetylated histone ligand recognition by the $\mathrm{BDP1}$ bromodomain of Plasmodium falciparum

Plasmodium falciparum requires a two-host system, moving between Anopheles mosquito and humans, to complete its life cycle. To overcome such dynamic growth conditions its histones undergo various post-translational modifications to regulate gene expression. The P. falciparum Bromodomain Protein 1 (PfBDP1) has been shown to interact with acetylated lysine modifications on histone H3 to regulate the expression of invasion-related genes. Here, we investigated the ability of the PfBDP1 bromodomain to interact with acetyllsyine modifications on additional core and variant histones. A crystal structure of the PfBDP1 bromodomain (PfBDP1-BRD) reveals it contains the conserved bromodomain fold, but our comparative analysis between the PfBDP1-BRD and human bromodomain families indicates it has a unique binding mechanism. Solution NMR spectroscopy and ITC binding assays carried out with acetylated histone ligands demonstrate that it preferentially recognizes tetra-acetylated histone H4, and we detected weaker interactions with multi-acetylated H2A.Z in addition to the previously reported interactions with acetylated histone H3. Our findings indicate PfBDP1 may play additional roles in the P. falciparum life cycle, and the distinctive features of its bromodomain binding pocket could be leveraged for the development of new therapeutic agents to help overcome the continuously evolving resistance of P. falciparum against currently available drugs.

59 BASIC BIOLOGICAL SCIENCES↗

The developments in modifying functionality of lignin and its application in biocomposites

With the advancement of sustainable material innovations, renewable natural biopolymers are gradually replacing traditional metal and petroleum-based synthetic materials due to their environmental friendliness, biodegradability, and economic advantages. Lignin, the second most abundant natural aromatic polymer in the plant kingdom, has emerged as a key candidate raw material for the development of green polymer systems because of its unique phenylpropane unit network structure, high carbon content, and rich functional group characteristics. However, challenges such as the inherent structural complexity, chemical inertness, and uneven molecular weight distribution of lignin limit its direct application. By employing modification strategies such as chemical functionalization and physical regulation, researchers can precisely control its reactivity, thermal stability, and interfacial compatibility, enabling the preparation of high-performance lignin-based functional composites. Here, this paper systematically reviews the principles and methodological advancements in lignin's multi-dimensional modification technology. It analyzes the mechanisms by which various chemical and physical modification techniques enhance the mechanical properties, functional responsiveness, and environmental adaptability of materials, and discusses innovative applications in fields such as intelligent packaging, biomedical materials, and energy storage devices. Furthermore, this review addresses the key challenges encountered in the high-value transformation of lignin, with the aim of offering a theoretical framework and technical pathway for the transformative development of lignin from agricultural and forestry by-products to functional material platforms.

Functional composites↗

Novel alkali intercalated and acid-exfoliated biochars with enhanced surface areas for contaminant adsorption applications

Cost-effective and eco-friendly adsorbents are essential in environmental engineering and biochar is a promising material from the perspective. A novel and efficient surface modification approach involving alkali intercalation and acid exfoliation was designed in this study to enhance the physicochemical properties of biochar. Here, the alkali intercalation process utilizes potassium hydroxide (KOH), while acid exfoliation involves varying HNO 3 , H 2 SO 4 , and H 3 PO 4 concentrations. A simple two-stage pyrolysis process was employed to facilitate the intercalation-exfoliation modification. The modified biochars were characterized using BET, SEM, XRD, etc., to understand physicochemical properties. To quantify the effectiveness of the modifications, adsorption of malachite green dye as a model moiety was investigated. Dye removal sorption rates exceeding 99 % were recorded in the case of the biochars modified through a two-step process using KOH and 0.1MH 3 PO 4 . Specifically, the highest contaminant removal of 99.9 % was recorded when 60 mg of the KOH-0.1MH 3 PO 4 biochar was employed, which is significantly higher than unmodified biochar’s 45.41 % removal at a higher dosage of 100 mg. Moreover, the adsorption kinetics revealed that all the modified biochars attained the maximum removal concentrations (~99 % removal) in a mere 300 min, indicating a tenfold improvement in adsorption rate from unmodified biochar's requirement of over 5000 min. The results achieved through this study provide a cost-effective, fast, and environment-friendly technology for enhancing the adsorption characteristics and performance of biochars toward contaminant removal.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

RNA–Polymer Conjugates via Direct Incorporation of the Chain Transfer Agent and PET–RAFT Polymerization

Covalent conjugation of RNA with synthetic polymers has emerged as a powerful approach for creating bioconjugates with synergistically enhanced properties. However, conventional methods require solid-phase synthesis to preinstall functional groups in RNA, significantly limiting practical applications. Here, we present a novel approach for synthesizing RNA–polymer conjugates via direct incorporation of chain transfer agent (CTA) into RNA through acylation chemistry and reversible addition–fragmentation chain transfer (RAFT) polymerization. A CTA-functionalized acyl imidazole reagent was synthesized to facilitate direct and covalent modification of various RNAs by reacting with their 2′-hydroxyl groups. Subsequent RAFT polymerization using RNA–CTA as a macro-CTA enabled direct grafting-from RNA, yielding RNA conjugates with controlled molecular weight and low dispersity. Notably, this postsynthetic modification strategy was successfully extended to modify biomass RNA, yielding thermoresponsive conjugates and biodegradable hydrogels. Overall, this advance allowed for the direct modification of synthetic and biomass RNAs, significantly enhancing the accessibility of functional RNA–polymer materials.

biomass↗

Gluon EMC effects in nuclear matter

In this work, we investigate the gluonic structure of nuclei within a mean-field model of nuclear structure based upon the modification of the structure of a bound nucleon, with the nucleon described by the Nambu–Jona-Lasinio model. This approach has been shown to reproduce the European Muon Collaboration (EMC) effect, involving the ratio of the spin-independent structure functions of a heavier nucleus to that of the deuteron. It also predicts a significant nuclear modification for the spin structure functions, known as the polarized EMC effect. Here we report sizeable nuclear modifications of the gluon distributions (a ‘gluon EMC effect’) for the ratios of both the unpolarized and polarized gluon distributions in nuclear matter to those of a free nucleon.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

Smoothed aggregation for difficult stretched mesh and coefficient variation problems

Abstract Four adaptations of the smoothed aggregation algebraic multigrid (SA‐AMG) method are proposed with an eye toward improving the convergence and robustness of the solver in situations when the discretization matrix contains many weak connections. These weak connections can cause higher than expected levels of fill‐in within the coarse discretization matrices and can also give rise to suboptimal smoothing within the prolongator smoothing phase. These smoothing drawbacks are due to the relatively small size of some diagonal entries within the filtered matrix that one obtains after dropping the weak connections. The new algorithms consider modifications to the Jacobi‐like step that defines the prolongator smoother, modifications to the filtered matrix, and also direct modifications to the resulting grid transfer operators. Numerical results are given illustrating the potential benefits of the proposed adaptations.

Hu, Jonathan J.↗

The Higgs trilinear coupling and the scale of new physics

We consider modifications of the Higgs potential due to new physics at high energy scales. These upset delicate cancellations predicted by the Standard Model for processes involving Higgs bosons and longitudinal gauge bosons, and lead to a breakdown of the theory at high energies. We focus on modifications of the Higgs trilinear coupling and use the violation of tree-level unitarity as an estimate of the scale where the theory breaks down. We obtain a completely model-independent bound of $ \underset{\sim }{<} $ 13 TeV for an order-1 modification of the trilinear. We argue that this bound can be saturated only in fine-tuned models, and the scale of new physics is likely to be much lower. The most stringent bounds are obtained from amplitudes involving multiparticle states that are not conventional scattering states. Our results show that a future determination of the Higgs cubic coupling can point to a well-defined scale of new physics that can be targeted and explored at future colliders.

43 PARTICLE ACCELERATORS↗

Measurement of inclusive charged-particle jet production in pp and p-Pb collisions at $ \sqrt{s_{\textrm{NN}}} $ = 5.02 TeV

Measurements of inclusive charged-particle jet production in pp and p-Pb collisions at center-of-mass energy per nucleon-nucleon collision $\sqrt{^sNN}$ = 5.02 TeV and the corresponding nuclear modification factor $R^{ch jet}_{pPb}$ are presented, using data collected with the ALICE detector at the LHC. Jets are reconstructed in the central rapidity region |η jet | < 0.5 from charged particles using the anti-k T algorithm with resolution parameters R = 0.2, 0.3, and 0.4. The p T -differential inclusive production cross section of charged-particle jets, as well as the corresponding cross section ratios, are reported for pp and p-Pb collisions in the transverse momentum range 10 < $p^{ch}_{T,jet}$ < 140 GeV/c and 10 < $p^{ch}_{T,jet}$ < 160 GeV/c, respectively, together with the nuclear modification factor $R^{ch jet}_{pPb}$ in the range 10 < $p^{ch}_{T,jet}$ < 140 GeV/c. The analysis extends the p T range of the previously-reported charged-particle jet measurements by the ALICE Collaboration. The nuclear modification factor is found to be consistent with one and independent of the jet resolution parameter with the improved precision of this study, indicating that the possible influence of cold nuclear matter effects on the production cross section of charged-particle jets in p-Pb collisions at $\sqrt{^sNN}$ = 5.02 TeV is smaller than the current precision. The obtained results are in agreement with other minimum bias jet measurements available for RHIC and LHC energies, and are well reproduced by the NLO perturbative QCD Powheg calculations with parton shower provided by PYTHIA8 as well as by JETSCAPE simulations.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Z-boson production in p-Pb collisions at $ \sqrt{s_{\mathrm{NN}}} $ = 8.16 TeV and Pb-Pb collisions at $ \sqrt{s_{\mathrm{NN}}} $ = 5.02 TeV

Measurement of Z-boson production in p-Pb collisions at $ \sqrt{s_{\mathrm{NN}}} $ = 8 . 16 TeV and Pb-Pb collisions at $ \sqrt{s_{\mathrm{NN}}} $ = 5 . 02 TeV is reported. It is performed in the dimuon decay channel, through the detection of muons with pseudorapidity - 4 < η μ < - 2 . 5 and transverse momentum $ {p}_{\mathrm{T}}^{\mu } $ > 20 GeV/ c in the laboratory frame. The invariant yield and nuclear modification factor are measured for opposite-sign dimuons with invariant mass 60 < m μμ < 120 GeV/ c 2 and rapidity 2 . 5 < $ {y}_{\mathrm{cms}}^{\mu \mu} $ < 4. They are presented as a function of rapidity and, for the Pb-Pb collisions, of centrality as well. The results are compared with theoretical calculations, both with and without nuclear modifications to the Parton Distribution Functions (PDFs). In p-Pb collisions the center-of-mass frame is boosted with respect to the laboratory frame, and the measurements cover the backward ( - 4 . 46 < $ {y}_{\mathrm{cms}}^{\mu \mu} $ < - 2 . 96) and forward (2 . 03 < $ {y}_{\mathrm{cms}}^{\mu \mu} $ < 3 . 53) rapidity regions. For the p-Pb collisions, the results are consistent within experimental and theoretical uncertainties with calculations that include both free-nucleon and nuclear-modified PDFs. For the Pb-Pb collisions, a 3 . 4 σ deviation is seen in the integrated yield between the data and calculations based on the free-nucleon PDFs, while good agreement is found once nuclear modifications are considered.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Measurement of beauty production via non-prompt charm hadrons in p–Pb collisions at $\sqrt{s_{\textrm{NN}}}$ = 5.02 TeV

The production cross sections of D 0 , D + , and Λ$^{+}_{c}$ hadrons originating from beauty-hadron decays (i.e. non-prompt) were measured for the first time at midrapidity in proton–lead (p–Pb) collisions at the center-of-mass energy per nucleon pair of $\sqrt{s_{\textrm{NN}}}$ = 5.02 TeV. Nuclear modification factors (R pPb ) of non-prompt D 0 , D + , and Λ$^{+}_{c}$ are calculated as a function of the transverse momentum (p T ) to investigate the modification of the momentum spectra measured in p–Pb collisions with respect to those measured in proton–proton (pp) collisions at the same energy. The R pPb measurements are compatible with unity and with the measurements in the prompt charm sector, and do not show a significant p T dependence. The p T -integrated cross sections and p T -integrated R pPb of non-prompt D 0 and D + mesons are also computed by extrapolating the visible cross sections down to p T = 0. The non-prompt D-meson R pPb integrated over p T is compatible with unity and with model calculations implementing modification of the parton distribution functions of nucleons bound in nuclei with respect to free nucleons. The non-prompt Λ$^{+}_{c}$/D 0 and D + /D 0 production ratios are computed to investigate hadronisation mechanisms of beauty quarks into mesons and baryons. The measured ratios as a function of p T display a similar trend to that measured for charm hadrons in the same collision system.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Benchtop assessment of sealing efficacy and breathability of additively manufactured (AM) face masks

The onset of the 2019 novel coronavirus disease (COVID-19) led to a shortage of personal protective equipment (PPE), medical devices, and other medical supplies causing many stakeholders and the general public alike to turn to additive manufacturing (AM) as a stopgap when normally accessible devices were not available. However, without a method to test these AM constructs, there continued to be a disconnect between AM suppliers and the community’s needs. The objective of this study was to characterize the pressure drop and leakage of four different publicly available AM face mask models with two filter material combinations, as well as to investigate the impact of frame modification techniques including the use of foam strips and hot-water face forming to improve fit when the masks are donned on manikin head forms. AM face mask frame designs were downloaded from public repositories during the early stages of the COVID-19 pandemic. AM face masks were fabricated and tested on manikin head forms within a custom chamber containing dry aerosolized NaCl. Pressure drops, particle penetration, and leakage were evaluated for various flow rates and NaCl concentrations. Results indicated that filter material combination and frame modification played a major role in the overall performance of the AM face masks studied. Filter material combinations showed improved performance when high filtration fabric was used, and the cross-sectional area of the fabric was increased. AM frame modifications appeared to improve AM face mask leakage performance by as much as 69.6%.

36 MATERIALS SCIENCE↗

PERCEPTIVE: an R shiny $\underline{p}$ipelin$\underline{e}$ for the p$\underline{r}$edi$\underline{c}$tion of $\underline{ep}$igenetic modula$\underline{t}$ors $\underline{i}$n no$\underline{v}$el sp$\underline{e}$cies

Epigenetic processes are central to regulating gene expression, genome stability, and metabolic function across the tree of life; yet, their roles remain underexplored in microalgae, especially as new species continue to be identified and characterized. This is likely due to the cumbersome nature and species-dependent attributes of epigenetic wet-lab methodologies, which preclude the rapid identification of epigenetic modifications and modulators. However, there is high conservation of epigenetic processes from budding yeast to humans; in many cases, one may infer how behavior and function are epigenetically regulated in novel species by identifying epigenetic modulators, or the proteins responsible for conferring epigenetic modifications. Here, to this end, we have developed a graphical software package, titled PERCEPTIVE (pipeline for the prediction of epigenetic modulators in novel species). This platform solely uses the genomic sequence of an algal species, and preexisting information from other model organisms, to predict the epigenetic modulators and associated modifications in algae. Predictions are presented to the user in a graphical interface, which provides literature-based interpretation of results, enabling users to quickly understand potential epigenetic processes in their algal species of interest and plan follow-up experiments. To test PERCEPTIVE, we predicted epigenetic modulators in several feedstock candidate algae species. To validate these predictions, wet-lab studies were performed, including mass spectrometry; these results underscore the high accuracy of PERCEPTIVE predictions. Overall, PERCEPTIVE represents a powerful in silico tool for the research and manipulation of algal species, which does not require a priori knowledge of epigenetics and is accessible to a broad set of investigators.

59 BASIC BIOLOGICAL SCIENCES↗

Bifunctional Asymmetric Fabric with Tailored Thermal Conduction and Radiation for Personal Cooling and Warming

Personal thermal management is emerging as a promising strategy to provide thermal comfort for the human body while conserving energy. By improving control over the heat dissipating from the human body, personal thermal management can provide effective personal cooling and warming. Here, we propose a facile surface modification approach to tailor the thermal conduction and radiation properties based on commercially available fabrics, to realize better management of the whole heat transport pathway from the human body to the ambient. Additionally, a bifunctional asymmetric fabric (BAF) offering both a cooling and a warming effect is demonstrated. Due to the advantages of roughness asymmetry and surface modification, the BAF demonstrates an effective cooling effect through enhanced heat conduction and radiation in the cooling mode; in the warming mode, heat dissipation along both routes is reduced for personal warming. As a result, a 4.6 °C skin temperature difference is measured between the cooling and warming BAF modes, indicating that the thermal comfort zone of the human body can be enlarged with one piece of BAF clothing. We expect this work to present new insights for the design of personal thermal management textiles as well as a novel solution for the facile modification of available fabrics for both personal cooling and warming.

42 ENGINEERING↗

Asymptotic-preserving gyrokinetic implicit particle-orbit integrator for arbitrary electromagnetic fields

We extend the asymptotic preserving and energy conserving time integrator for charged-particle motion developed in Ricketson and Chacón (2020) to include finite Larmor-radius (FLR) effects in the presence of electric-field length-scales comparable to the particle gyro-radius (the gyro-kinetic limit). We introduce two modifications to the earlier scheme. The first is the explicit gyro-averaging of the electric field at the half time-step, along with an analogous modification to the current deposition, which we show preserves total energy conservation in implicit PIC schemes. The number of gyrophase samples is chosen adaptively, ensuring proper averaging for large timesteps and the recovery of full-orbit dynamics in the small time-step limit. The second modification is an alternating large and small time-step strategy that ensures the particle trajectory samples gyrophases evenly. We show that this strategy relaxes the time-step restrictions on the scheme, allowing even larger speed-ups than previously achievable. We demonstrate the new method with several single-particle motion tests in a variety of electromagnetic field configurations featuring gyro-scale variation in the electric field. Finally, the results demonstrate the advertised ability to capture FLR effects accurately even when significantly stepping over the gyration time-scale.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

A Bis(imidazole)-based cysteine labeling tool for metalloprotein assembly

Precise metal-protein coordination by design remains a considerable challenge. Polydentate, high-metal-affinity protein modifications, both chemical and recombinant, can enable metal localization. However, these constructs are often bulky, conformationally and stereochemically ill-defined, or coordinately saturated. Here, we expand the biomolecular metal-coordination toolbox with the irreversible attachment to cysteine of bis(1-methylimidazol-2-yl)ethene (“BMIE”), which generates a compact imidazole-based metal-coordinating ligand. Conjugate additions of small-molecule thiols (thiocresol and N-Boc-Cys) with BMIE confirm general thiol reactivity. The BMIE adducts are shown to complex the divalent metal ions Cu ++ and Zn ++ in bidentate (N 2 ) and tridentate (N 2 S*) coordination geometries. Cysteine-targeted BMIE modification (>90% yield at pH 8.0) of a model protein, the S203C variant of carboxypeptidase G2 (CPG2), measured with ESI-MS, confirms its utility as a site-selective bioconjugation method. ICP-MS analysis confirms mono-metallation of the BMIE-modified CPG2 protein with Zn ++ , Cu ++ , and Co ++ . EPR characterization of the BMIE-modified CPG2 protein reveals the structural details of the site selective 1:1 BMIE-Cu ++ coordination and symmetric tetragonal geometry under physiological conditions and in the presence of various competing and exchangeable ligands (H 2 O/HO – , tris, and phenanthroline). An X-ray protein crystal structure of BMIE-modified CPG2-S203C demonstrates that the BMIE modification is minimally disruptive to the overall protein structure, including the carboxypeptidase active sites, although Zn ++ metalation could not be conclusively discerned at the resolution obtained. The carboxypeptidase catalytic activity of BMIE-modified CPG2-S203C was also assayed and found to be minimally affected. Finally, these features, combined with ease of attachment, define the new BMIE-based ligation as a versatile metalloprotein design tool, and enable future catalytic and structural applications.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

The Acyl-Proteome of Syntrophus aciditrophicus Reveals Metabolic Relationships in Benzoate Degradation

Syntrophus aciditrophicus is a syntrophic bacterium degrading fatty and aromatic acids into acetate, CO 2 , formate, and H 2 , consumed by methanogenic archaea. The syntroph’s acyllysine modifications were analyzed with a workflow avoiding antibody enrichment, enabling unbiased global acylation profiling. Seven acyl modification types were identified, six corresponding to reactive acyl-CoA species intermediates in benzoate degradation. Benzoatedegrading enzymes were also prominent among the 60 acylated proteins. The abundant acylations and active deacylases suggest that post-translational modifications directly regulate syntrophic benzoate degradation

59 BASIC BIOLOGICAL SCIENCES↗

Measurement of the radius dependence of charged-particle jet suppression in Pb–Pb collisions at $\sqrt{s_{NN}}=5.02$ TeV

The ALICE Collaboration reports a differential measurement of inclusive jet suppression using pp and Pb–Pb collision data at a center-of-mass energy per nucleon–nucleon collision $\sqrt{s_{NN}}=5.02$ TeV. Charged-particle jets are reconstructed using the anti-$k_T$ algorithm with resolution parameters R=0.2, 0.3, 0.4, 0.5, and 0.6 in pp collisions and R=0.2, 0.4, 0.6 in central (0–10%), semi-central (30–50%), and peripheral (60–80%) Pb–Pb collisions. A novel approach based on machine learning is employed to mitigate the influence of jet background. This enables measurements of inclusive jet suppression in new regions of phase space, including down to the lowest jet $p_T$ ≥ 40 GeV/c at R=0.6 in central Pb–Pb collisions. This is an important step for discriminating different models of jet quenching in the quark–gluon plasma. The transverse momentum spectra, nuclear modification factors, derived cross section, and nuclear modification factor ratios for different jet resolution parameters of charged-particle jets are presented and compared to model predictions. A mild dependence of the nuclear modification factor ratios on collision centrality and resolution parameter is observed. The results are compared to a variety of jet-quenching models with varying levels of agreement.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗