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At least 613 records · Page 34

A Study of the Non-Thermal X-Ray Emission of Shell-Type Supernova Remnants

The term of the second year of the award is the period from March 15, 2001 to March 14, 2002. As was the specified goal of the second year, we analyzed the spatial and spectral X-ray data for several young supernova remnants. I published a paper about an analysis of the ROSAT, ASCA, and RXTE data for the supernova remnant SN 1006. A copy of this paper is enclosed. As described in the paper, we believe that we accurately modeled the nonthermal X-ray emission from the remnant. The results of this analysis are used to infer properties about the cosmic rays accelerated in the remnant and to argue that the strength of the magnetic field in the remnant is considerably larger than the value of about 10 micro G reported elsewhere. The results were presented at the August 2001 International Cosmic Ray Conference in Hamburg, German),. I began analyzing new Chandra X-ray data for SN 1006. This analysis will yield the first measure of the strength of the magnetic field in the remnant for the first time. Preliminary results support our previous conclusion that the magnetic field strength in the remnant is much larger than 10 micro G. The field strength seems to be about the strength expected based on an equipartition calculation. The result supports recent models that describe the how the shock structure is influenced by the efficient acceleration of cosmic rays. This work will be presented at the April 2002 High Energy Astrophysics Division meeting in Albuquerque and published this summer. A copy of the abstract for the talk is enclosed. I began studying new Chandra X-ray data for the supernova remnant Cas A. The results of this work show that the forward shock is a region where cosmic-ray electrons are accelerated, which is consistent with theoretical expectations. The work was presented at the September 2001 Two Years of Science with Chandra symposium in Washington, DC. A copy of the poster paper is enclosed. Dr. Thomas Pannuti, whose research work is supported by the award, analyzed ROSAT, ASCA, and RXTE data for the supernova remnant G347.3-0.5. The results show for the first time that thermal X-ray emission is produced in the remnant. As expected, the thermal emission is consistent with a model in which the remnant is expanding into a very low density environment. The results also provide an accurate description of the nonthermal emission from the remnant. Dr. Pannuti presented this work at several conferences. A copy of the paper for the proceedings of the August 2001 Neutron Stars in Supernova Remnants symposium in enclosed. The work will be submitted to the Astrophysical Journal in the next few months.

Allen, Glenn E.↗

Effects of periodontitis on postoperative pneumonia in patients with lung and esophageal cancer

Abstract Background Few studies have been conducted on the relationship between chronic periodontitis and postoperative pneumonia (POP) in patients with lung and esophageal cancer. Furthermore, it remains controversial as to whether improving the periodontal condition of patients with lung and esophageal cancer before surgery reduces the incidence of POP. This retrospective study was conducted to assess the effects of periodontal therapy in patients with lung and esophageal cancer to prevent POP. Methods A total of 265 patients with lung or esophageal cancer complicated with chronic periodontitis who underwent open thoracotomy between July 2015 and June 2019 were selected and given the choice of being in the experimental or control group. A total of 141 participants in the experimental group received periodontal therapy, and 124 participants in the control group did not receive periodontal therapy. All clinical data of participants in both groups were retrospectively studied to determine the incidence of POP on the 30th day after discharge from hospital. Results Eight patients in the experimental and six in the control group, respectively, were excluded from the study. It was found that four of the 133 patients suffered from POP in the experimental group (incidence: 3.01%). A total of 18 of 118 patients in the control group had a pulmonary infection (incidence: 15.25%). POP incidence in the experimental group was significantly lower than that in the control group, and in the level analysis of different types of periodontitis, surgical methods, and diseases ( p < 0.05). Conclusions Periodontal treatment is associated with a lower incidence of POP following lung and esophageal cancer surgery. Improving the periodontal condition of patients helps prevent POP. The presence of periodontitis is an important predisposing factor for POP in patients after open thoracotomy. Periodontal examination and therapy are recommended before the surgical treatment of lung or esophageal cancer.

Jia, Chunling↗

Launch Pad in a Box

NASA Kennedy Space Center (KSC) is developing a new deployable launch system capability to support a small class of launch vehicles for NASA and commercial space companies to test and launch their vehicles. The deployable launch pad concept was first demonstrated on a smaller scale at KSC in 2012 in support of NASA Johnson Space Center's Morpheus Lander Project. The main objective of the Morpheus Project was to test a prototype planetary lander as a vertical takeoff and landing test-bed for advanced spacecraft technologies using a hazard field that KSC had constructed at the Shuttle Landing Facility (SLF). A steel pad for launch or landing was constructed using a modular design that allowed it to be reconfigurable and expandable. A steel flame trench was designed as an optional module that could be easily inserted in place of any modular steel plate component. The concept of a transportable modular launch and landing pad may also be applicable to planetary surfaces where the effects of rocket exhaust plume on surface regolith is problematic for hardware on the surface that may either be damaged by direct impact of high speed dust particles, or impaired by the accumulation of dust (e.g., solar array panels and thermal radiators). During the Morpheus free flight campaign in 2013-14, KSC performed two studies related to rocket plume effects. One study compared four different thermal ablatives that were applied to the interior of a steel flame trench that KSC had designed and built. The second study monitored the erosion of a concrete landing pad following each landing of the Morpheus vehicle on the same pad located in the hazard field. All surfaces of a portable flame trench that could be directly exposed to hot gas during launch of the Morpheus vehicle were coated with four types of ablatives. All ablative products had been tested by NASA KSC and/or the manufacturer. The ablative thicknesses were measured periodically following the twelve Morpheus free flight tests. The thermal energy from the Morpheus rocket exhaust plume was only found to be sufficient to cause appreciable ablation of one of the four ablatives that were tested. The rocket exhaust plume did cause spalling of concrete during each descent and landing on a landing pad in the hazard field. The Extended Abstract ASE Earth and Space Conference April, 2016 - Orlando, FL concrete surface was laser scanned following each Morpheus landing, and the total volume of spalled concrete that eroded between the first and final landings of the Morpheus Project's test campaign was estimated. This paper will also describe a new deployable launch system (DLS) capability that is being developed at KSC and was publicly announced in May 2015 (KSC Partnerships, 2015). The DLS is a set of multi-user Ground Support Equipment that will be used to test and launch small class launch vehicles. The system is comprised of four main elements: the Launch Stand, the Flame Deflector, the Pad Apron and the KAMAG transporter. The system elements are designed to be deployed at launch or test sites within the KSC/CCAFS boundaries. The DLS is intended to be used together with the Fluid and Electrical System of the Universal Propellant Servicing Systems and Mobile Power Data and Communications Unit.

Ablatives Testing↗

Launch Pad in a Box

NASA Kennedy Space Center (KSC) is developing a new deployable launch system capability to support a small class of launch vehicles for NASA and commercial space companies to test and launch their vehicles. The deployable launch pad concept was first demonstrated on a smaller scale at KSC in 2012 in support of NASA Johnson Space Center's Morpheus Lander Project. The main objective of the Morpheus Project was to test a prototype planetary lander as a vertical takeoff and landing test-bed for advanced spacecraft technologies using a hazard field that KSC had constructed at the Shuttle Landing Facility (SLF). A steel pad for launch or landing was constructed using a modular design that allowed it to be reconfigurable and expandable. A steel flame trench was designed as an optional module that could be easily inserted in place of any modular steel plate component. The concept of a transportable modular launch and landing pad may also be applicable to planetary surfaces where the effects of rocket exhaust plume on surface regolith is problematic for hardware on the surface that may either be damaged by direct impact of high speed dust particles, or impaired by the accumulation of dust (e.g., solar array panels and thermal radiators). During the Morpheus free flight campaign in 2013-14, KSC performed two studies related to rocket plume effects. One study compared four different thermal ablatives that were applied to the interior of a steel flame trench that KSC had designed and built. The second study monitored the erosion of a concrete landing pad following each landing of the Morpheus vehicle on the same pad located in the hazard field. All surfaces of a portable flame trench that could be directly exposed to hot gas during launch of the Morpheus vehicle were coated with four types of ablatives. All ablative products had been tested by NASA KSC and/or the manufacturer. The ablative thicknesses were measured periodically following the twelve Morpheus free flight tests. The thermal energy from the Morpheus rocket exhaust plume was only found to be sufficient to cause appreciable ablation of one of the four ablatives that were tested. The rocket exhaust plume did cause spalling of concrete during each descent and landing on a landing pad in the hazard field. The Extended Abstract ASE Earth and Space Conference April, 2016 - Orlando, FL concrete surface was laser scanned following each Morpheus landing, and the total volume of spalled concrete that eroded between the first and final landings of the Morpheus Project's test campaign was estimated. This paper will also describe a new deployable launch system (DLS) capability that is being developed at KSC and was publicly announced in May 2015 (KSC Partnerships, 2015). The DLS is a set of multi-user Ground Support Equipment that will be used to test and launch small class launch vehicles. The system is comprised of four main elements: the Launch Stand, the Flame Deflector, the Pad Apron and the KAMAG transporter. The system elements are designed to be deployed at launch or test sites within the KSC/CCAFS boundaries. The DLS is intended to be used together with the Fluid and Electrical System of the Universal Propellant Servicing Systems and Mobile Power Data and Communications Unit

Mobile Launch Pad Development↗

Doubling protected land area may be inefficient at preserving the extent of undeveloped land and could cause substantial regional shifts in land use

Abstract Projection of land use and land‐cover change is highly uncertain yet drives critical estimates of carbon emissions, climate change, and food and bioenergy production. We use new, spatially explicit land availability data in conjunction with a model sensitivity analysis to estimate the effects of additional land protection on land use and land cover. The land availability data include protected land and agricultural suitability and is incorporated into the Moirai land data system for initializing the Global Change Analysis Model. Overall, decreasing land availability is relatively inefficient at preserving undeveloped land while having considerable regional land‐use impacts. Current amounts of protected area have little effect on land and crop production estimates, but including the spatial distribution of unsuitable (i.e., unavailable) land dramatically shifts bioenergy production from high northern latitudes to the rest of the world, compared with uniform availability. This highlights the importance of spatial heterogeneity in understanding and managing land change. Approximately doubling the current protected area to emulate a 30% protected area target may avoid land conversion by 2050 of less than half the newly protected extent while reducing bioenergy feedstock land by 10.4% and cropland and grazed pasture by over 3%. Regional bioenergy land may be reduced (increased) by up to 46% (36%), cropland reduced by up to 61%, pasture reduced by up to 100%, and harvested forest reduced by up to 35%. Only a few regions show notable gains in some undeveloped land types of up to 36%. Half of the regions can reach the target using only unsuitable land, which would minimize impacts on agriculture but may not meet conservation goals. Rather than focusing on an area target, a more robust approach may be to carefully select newly protected land to meet well‐defined conservation goals while minimizing impacts to agriculture.

54 ENVIRONMENTAL SCIENCES↗

Characterizing Flow Instabilities During Transient Events in the Turbine Rim Seal Cavity

Abstract Gas turbine engine design requires considerations not only for long-term steady operation but also for critical transient events. Aircraft engines undergo significant stress during takeoff and landing, while power generation turbines must be flexible for hot restarts as renewable energy sources come online and offline. During these transient cycles, engines sustain wear and degradation that can lead to a reduction in the lifespan of their components and more frequent, costly maintenance. Cooling flows are often used to mitigate these effects, but can lead to complex and problematic flow interactions. This study uses high-frequency response pressure probes and heat flux gauges in the rim seal cavity of a one-stage research turbine to characterize the properties of large-scale flow structures during transient operation. A continuous-duration turbine testing facility provides the ability to assess the importance of these transients by first reaching steady-state operation before imposing transient behaviors. Although previous studies have conducted similar measurements for steady purge flows and wheel speeds, varying these parameters to simulate transient effects revealed several unique phenomena not identifiable with discrete steady measurements. The measurement approach connects the varied transient parameter to the behavior of the flow structures to enable a better understanding of the type of instability observed and the root cause of its formation. In particular, a relationship between instability cell formation and rim sealing effectiveness was identified using experimental data and was supported through computational simulations.

Engineering↗

DIPS-Plus: The enhanced database of interacting protein structures for interface prediction

Abstract In this work, we expand on a dataset recently introduced for protein interface prediction (PIP), the Database of Interacting Protein Structures (DIPS), to present DIPS-Plus, an enhanced, feature-rich dataset of 42,112 complexes for machine learning of protein interfaces. While the original DIPS dataset contains only the Cartesian coordinates for atoms contained in the protein complex along with their types, DIPS-Plus contains multiple residue-level features including surface proximities, half-sphere amino acid compositions, and new profile hidden Markov model (HMM)-based sequence features for each amino acid, providing researchers a curated feature bank for training protein interface prediction methods. We demonstrate through rigorous benchmarks that training an existing state-of-the-art (SOTA) model for PIP on DIPS-Plus yields new SOTA results, surpassing the performance of some of the latest models trained on residue-level and atom-level encodings of protein complexes to date.

59 BASIC BIOLOGICAL SCIENCES↗

Spatial Predictions and Associated Uncertainty of Annual Soil Respiration at the Global Scale

Abstract Soil respiration (Rs), the soil‐to‐atmosphere CO 2 flux produced by microbes and plant roots, is a critical but uncertain component of the global carbon cycle. Our current understanding of the variability and dynamics is limited by the coarse spatial resolution of existing estimates. We predicted annual Rs and associated uncertainty across the world at 1‐km resolution using a quantile regression forest algorithm trained with observations from the global Soil Respiration Database spanning from 1961 to 2011. This model yielded a global annual Rs estimate of 87.9 Pg C/year with an associated global uncertainty of 18.6 (mean absolute error) and 40.4 (root mean square error) Pg C/year. The estimated annual heterotrophic respiration (Rh), derived from empirical relationships with Rs, was 49.7 Pg C/year over the same period. Predicted Rs rates and associated uncertainty varied widely across vegetation types, with the greatest predicted rates of Rs in evergreen broadleaf forests (accounting for 20.9% of global Rs). The greatest prediction uncertainties were in northern latitudes and arid to semiarid ecosystems, suggesting that these areas should be targeted in future measurement campaigns. This study provides predictions of Rs (and associated prediction uncertainty) at unprecedentedly high spatial resolution across the globe that could help constrain local‐to‐global process‐based models. Furthermore, it provides insights into the large variability of Rs and Rh across vegetation classes and identifies regions and vegetation types with poor model performance that should be prioritized for future data collection.

Warner, D. L.↗

Microgravity crystallization of perdeuterated tryptophan synthase for neutron diffraction

Abstract Biologically active vitamin B 6 -derivative pyridoxal 5′-phosphate (PLP) is an essential cofactor in amino acid metabolic pathways. PLP-dependent enzymes catalyze a multitude of chemical reactions but, how reaction diversity of PLP-dependent enzymes is achieved is still not well understood. Such comprehension requires atomic-level structural studies of PLP-dependent enzymes. Neutron diffraction affords the ability to directly observe hydrogen positions and therefore assign protonation states to the PLP cofactor and key active site residues. The low fluxes of neutron beamlines require large crystals (≥0.5 mm 3 ). Tryptophan synthase (TS), a Fold Type II PLP-dependent enzyme, crystallizes in unit gravity with inclusions and high mosaicity, resulting in poor diffraction. Microgravity offers the opportunity to grow large, well-ordered crystals by reducing gravity-driven convection currents that impede crystal growth. We developed the Toledo Crystallization Box (TCB), a membrane-barrier capillary-dialysis device, to grow neutron diffraction-quality crystals of perdeuterated TS in microgravity. Here, we present the design of the TCB and its implementation on Center for Advancement of Science in Space (CASIS) supported International Space Station (ISS) Missions Protein Crystal Growth (PCG)-8 and PCG-15. The TCB demonstrated the ability to improve X-ray diffraction and mosaicity on PCG-8. In comparison to ground control crystals of the same size, microgravity-grown crystals from PCG-15 produced higher quality neutron diffraction data. Neutron diffraction data to a resolution of 2.1 Å has been collected using microgravity-grown perdeuterated TS crystals from PCG-15.

59 BASIC BIOLOGICAL SCIENCES↗

Breeding Realistic D‐Brane Models

Abstract Intersecting branes provide a useful mechanism to construct particle physics models from string theory with a wide variety of desirable characteristics. The landscape of such models can be enormous, and navigating towards regions which are most phenomenologically interesting is potentially challenging. Machine learning techniques can be used to efficiently construct large numbers of consistent and phenomenologically desirable models. In this work we phrase the problem of finding consistent intersecting D‐brane models in terms of genetic algorithms, which mimic natural selection to evolve a population collectively towards optimal solutions. For a four‐dimensional supersymmetric type IIA orientifold with intersecting D6‐branes, we demonstrate that unique, fully consistent models can be easily constructed, and, by a judicious choice of search environment and hyper‐parameters, of the found models contain the desired Standard Model gauge group factor. Having a sizable sample allows us to draw some preliminary landscape statistics of intersecting brane models both with and without the restriction of having the Standard Model gauge factor.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Iron Availability within the Leaf Vasculature Determines the Magnitude of Iron Deficiency Responses in Source and Sink Tissues in Arabidopsis

Abstract Iron (Fe) uptake and translocation in plants are fine-tuned by complex mechanisms that are not yet fully understood. In Arabidopsis thaliana, local regulation of Fe homeostasis at the root level has been extensively studied and is better understood than the systemic shoot-to-root regulation. While the root system is solely a sink tissue that depends on photosynthates translocated from source tissues, the shoot system is a more complex tissue, where sink and source tissues occur synchronously. In this study, and to gain better insight into the Fe deficiency responses in leaves, we overexpressed Zinc/Iron-regulated transporter-like Protein (ZIP5), an Fe/Zn transporter, in phloem-loading cells (proSUC2::AtZIP5) and determined the timing of Fe deficiency responses in sink (young leaves and roots) and source tissues (leaves). Transgenic lines overexpressing ZIP5 in companion cells displayed increased sensitivity to Fe deficiency in root growth assays. Moreover, young leaves and roots (sink tissues) displayed either delayed or dampened transcriptional responses to Fe deficiency compared to wild-type (WT) plants. We also took advantage of the Arabidopsis mutant nas4x-1 to explore Fe transcriptional responses in the opposite scenario, where Fe is retained in the vasculature but in an unavailable and precipitated form. In contrast to proSUC2::AtZIP5 plants, nas4x-1 young leaves and roots displayed a robust and constitutive Fe deficiency response, while mature leaves showed a delayed and dampened Fe deficiency response compared to WT plants. Altogether, our data provide evidence suggesting that Fe sensing within leaves can also occur locally in a leaf-specific manner.

Cell Biology↗

Overview of the Life Science Glovebox (LSG) Facility and the Research Performed in the LSG

The Life Science Glovebox (LSG) is a rack facility currently under development with a projected availability for International Space Station (ISS) utilization in the FY2018 timeframe. Development of the LSG is being managed by the Marshal Space Flight Center (MSFC) with support from Ames Research Center (ARC) and Johnson Space Center (JSC). The MSFC will continue management of LSG operations, payload integration, and sustaining following delivery to the ISS. The LSG will accommodate life science and technology investigations in a "workbench" type environment. The facility has a.Ii enclosed working volume that is held at a negative pressure with respect to the crew living area. This allows the facility to provide two levels of containment for handling Biohazard Level II and lower biological materials. This containment approach protects the crew from possible hazardous operations that take place inside the LSG work volume. Research investigations operating inside the LSG are provided approximately 15 cubic feet of enclosed work space, 350 watts of28Vdc and l IOVac power (combined), video and data recording, and real time downlink. These capabilities will make the LSG a highly utilized facility on ISS. The LSG will be used for biological studies including rodent research and cell biology. The LSG facility is operated by the Payloads Operations Integration Center at MSFC. Payloads may also operate remotely from different telescience centers located in the United States and different countries. The Investigative Payload Integration Manager (IPIM) is the focal to assist organizations that have payloads operating in the LSG facility. NASA provides an LSG qualification unit for payload developers to verify that their hardware is operating properly before actual operation on the ISS. This poster will provide an overview of the LSG facility and a synopsis of the research that will be accomplished in the LSG. The authors would like to acknowledge Ames Research Center, Johnson Space Center, Teledyne Brown Engineering, MOOG-Bradford Engineering and the entire LSG Team for their inputs into this abstract.

Cole, J. Michael↗

Filling the Gaps: A Bayesian Mixture Model for Imputing Missing Soil Water Content Data

ABSTRACT Soil water content (SWC) data are central to evaluating how soil moisture varies over time and space and influences critical plant and ecosystem functions, especially in water‐limited drylands. However, sensors that record SWC at high frequencies often malfunction, leading to incomplete timeseries and limiting our understanding of dryland ecosystem dynamics. We developed an analytical approach to impute missing SWC data, which we tested at six eddy flux tower sites along an elevation gradient in the southwestern United States. We impute missing data as a mixture of linearly interpolated SWC between the observed endpoints of a missing data gap and SWC simulated by an ecosystem water balance model (SOILWAT2). Within a Bayesian framework, we allowed the relative utility (mixture weight) of each component (linearly interpolated vs. SOILWAT2) to vary by depth, site and gap characteristics. We explored “fixed” weights versus “dynamic” weights that vary as a function of cumulative precipitation, average temperature, and time since the start of the gap. Both models estimated missing SWC data well ( R 2 = 0.70–0.88 vs. 0.75–0.91 for fixed vs. dynamic weights, respectively), but the utility of linearly interpolated versus SOILWAT2 values depended on site and depth. SOILWAT2 was more useful for more arid sites, shallower depths, longer and warmer gaps and gaps that received greater precipitation. Overall, the mixture model reliably gap‐fills SWC, while lending insight into processes governing SWC dynamics. This approach to impute missing data could be adapted to accommodate more than two mixture components and other types of environmental timeseries.

Ogle, Kiona [School of Informatics, Computing, and↗

Bentonite buffer under high temperature: laboratory experiments and coupled process modeling

Abstract. Bentonite buffer in a geological repository will be simultaneously heated from decaying radioactive waste and hydrated from the surrounding host rock, triggering complex and coupled THMC (thermal–hydrological–mechanical–chemical) processes. Understanding the THMC behavior of bentonite-based engineered barrier system (EBS) is key to the evaluation and prediction of its long-term performance. Studies on the THMC process have been focused on conditions under 100 ∘C, as most design concepts impose a thermal limit of 100 ∘C in bentonite. Recently, studies under high-temperature conditions have been conducted to evaluate the possibility of raising the thermal limit and expanding the data/knowledge base to increase the confidence level. In this abstract, we present a series of bench-scale laboratory experiments at high temperatures (up to 200 ∘C) and the corresponding modeling work. Two sets of column tests were conducted, and each set consisted of two test columns: a control column undergoing only hydration (non-heated) and an experiment column experiencing both heating and hydration (heated). During the experiment, frequent X-ray computed tomography (CT) images were collected to provide a 3D visualization of the density distribution and present the spatiotemporal evolution of (1) hydration/dehydration, (2) clay swelling/shrinkage, (3) displacement, and (4) mineral precipitation. The two sets of tests differ with respect to several experimental conditions, such as bentonite type, compacted density and water content, water chemistry, and hydration pressure, but the important difference is that the first set used bentonite powder with a dry density of 1.28 g cm−3, whereas the second set used granulated bentonite (mixture of pellets and powder) with a dry density of 1.45–1.5 g cm−3. In both sets of experiments, a comprehensive post-dismantling characterization of bentonite samples was carried out after the column tests had been running for 1.5 years. Comparing non-heated and heated columns, the temperature gradient led to lower degree of homogenization of bentonite after bentonite became fully saturated; comparing the first and second sets, granulated and powdered bentonite exhibited drastically different hydration behavior. A THM model with a 2D axisymmetric grid system was used to interpret the data from the first set of tests. The model considers the combined impact of saturation, fluid pressure, and porosity change due to swelling/compression on the spatiotemporal distribution of bulk density and movement of the thermocouple modules. Observations from the tests help us understand the early perturbation of bentonite buffer under high temperature, and data from these tests improve the calibration of key constitutive hydrological and mechanical models and, therefore, enhance the modeling capability with respect to calculating the long-term evolution of bentonite buffer.

Zheng, Liange↗

A variant selection framework for genome graphs

Abstract Motivation Variation graph representations are projected to either replace or supplement conventional single genome references due to their ability to capture population genetic diversity and reduce reference bias. Vast catalogues of genetic variants for many species now exist, and it is natural to ask which among these are crucial to circumvent reference bias during read mapping. Results In this work, we propose a novel mathematical framework for variant selection, by casting it in terms of minimizing variation graph size subject to preserving paths of length α with at most δ differences. This framework leads to a rich set of problems based on the types of variants [e.g. single nucleotide polymorphisms (SNPs), indels or structural variants (SVs)], and whether the goal is to minimize the number of positions at which variants are listed or to minimize the total number of variants listed. We classify the computational complexity of these problems and provide efficient algorithms along with their software implementation when feasible. We empirically evaluate the magnitude of graph reduction achieved in human chromosome variation graphs using multiple α and δ parameter values corresponding to short and long-read resequencing characteristics. When our algorithm is run with parameter settings amenable to long-read mapping (α = 10 kbp, δ = 1000), 99.99% SNPs and 73% SVs can be safely excluded from human chromosome 1 variation graph. The graph size reduction can benefit downstream pan-genome analysis. Availability and implementation https://github.com/AT-CG/VF. Supplementary information Supplementary data are available at Bioinformatics online.

59 BASIC BIOLOGICAL SCIENCES↗

Integrating LEO and GEO Observations: Toward Optimal Summertime Satellite Precipitation Retrieval

Abstract Reliable quantitative precipitation estimation with a rich spatiotemporal resolution is vital for understanding the Earth’s hydrological cycle. Precipitation estimation over land and coastal regions is necessary for addressing the high degree of spatial heterogeneity of water availability and demand, and for resolving the extremes that modulate and amplify hazards such as flooding and landslides. Advancements in computation power along with unique high spatiotemporal and spectral resolution data streams from passive meteorological sensors aboard geosynchronous Earth-orbiting (GEO) and low Earth-orbiting (LEO) satellites offer exciting opportunities to retrieve information about surface precipitation phenomena using data-driven machine learning techniques. In this study, the capabilities of U-Net–like architecture are investigated to map instantaneous, summertime surface precipitation intensity at the spatial resolution of 2 km. The calibrated brightness temperature products from the Global Precipitation Measurement (GPM) Microwave Imager (GMI) radiometer are combined with multispectral images (visible, near-infrared, and infrared bands) from the Advanced Baseline Imager (ABI) aboard the GOES-R satellites as main inputs to the U-Net–like precipitation algorithm. Total precipitable water and 2-m temperature from the Global Forecast System (GFS) model are also used as auxiliary inputs to the model. The results show that the U-Net–like algorithm can capture fine-scale patterns and intensity of surface precipitation at high spatial resolution over stratiform and convective precipitation regimes. The evaluations reveal the potential of extracting relevant, high spatial features over complex surface types such as mountainous regions and coastlines. The algorithm allows users to interpret the inputs’ importance and can serve as a starting point for further exploration of precipitation systems within the field of hydrometeorology.

Meteorology & Atmospheric Sciences↗

Isotopic Investigations of Nebular and Parent Body Processes with a High Sensitivity Ion Microprobe

NASA supported the development of the CAMECA ims 1270 ion microprobe at UCLA for applications in cosmochemistry. The primary investigations centered on measuring the microscopic distributions of key isotopic abundances in primitive meteoritic materials as a means of constraining the nature of important thermal and chemical processes in the solar nebula and the timescales associated with those processes. Our prior work on oxygen isotope anomalies in a wide variety of meteoritic materials had led us to a view of a spatially heterogeneous nebula, and in particular, a restricted region for CAI formation that is characterized by O-16-rich gas. Because of its production of CAIs in the energetic local environment near the protosun, the existence of a natural transport mechanism via bipolar outflows, and a general astrophysical plausibility, we were attracted to the fluctuating X-wind model which had been put forward by Frank Shu, Typhoon Lee, and colleagues. With our collaborators, we undertook a series of investigations to test the viability of this hypothesis; this work led directly to the discovery of live Be in CAIs and a clear demonstration of the existence of 160-rich condensates, which necessarily implies an O-16-rich gaseous reservoir in the nebula. Both of these observations fit well within the context of X-wind type models, i.e. formation of CAIs (or condensation of their precursors) in the reconnection ring sunward of the inner edge of the accretion disk, however much work remains to be done to test whether the physical parameters of the model can quantitatively predict not only the thermal histories of CAIs but also their radioactivity. The issue of spatial heterogeneity in the nebula, central to the X-wind model, is also at the heart of any chronology based on short-lived radioisotopes. In this work, we followed up on strong hints for presence of exireme:j: (53 day) short-lived Be-7, and have prepared a manuscript (in revision). We also measured A1-Mg systematics by a combined approach of high-precision multiple-collector SIMS analyses, traditional analyses on the UCLA ims 1270, and high-spatial resolution analyses using a NanoSIMS instrument. The data help to deconvolve effects due to partial resetting of the A1-Mg system by multiple thermal events. Finally, we initiated investigations related to nebular heterogeneity with a new initiative of in situ high-precision sulfur isotope analyses of sulfides from a wide variety of components of chondrites. The ultimate goal of all this work is to help develop a better understanding of the relationships between CAIs and chondrules, the astrophysical environments in which they formed, and the timescales of nebular processes. As detailed in Table 1, for the project period, 14 manuscripts were published and 17 abstracts were presented describing the work.

McKeegan, Kevin D.↗

Retro-Commissioning Sensor Suitcase for Energy Efficiency

This project will enable Pacific Northwest National Laboratory (PNNL) and Lawrence Berkeley National Laboratory (LBNL) to work with industry partner, GreenPath Energy Solutions, joint developers of the Suitcase, to enhance the capabilities and usability of the Retro-Commissioning Sensor Suitcase (hereinafter the Sensor Suitcase or Suitcase), assisting GreenPath to take the Suitcase to market and rapidly expand their market share. The proposed project will specifically focus on 1) adding sensors types to extend the data collection capability and support more building and equipment performance metrics and identification of even more energy saving opportunities, 2) developing algorithms to identify recommendations for the new energy savings opportunities from item 1 and to prototype software modifications implementing them, 3) validating the use of vibration sensors to detect the operating state of a broader set of packaged HVAC equipment (additional capacities, different numbers of stages, etc.) than tested in initial development and modifying the state algorithm and software code, as needed, 4) improving cost-effectiveness in manufacturing the Sensor Suitcase, and 5) additional field testing of the technology in real buildings to more comprehensively validate Suitcase performance and to guide refinement of its capabilities. Project results will position GreenPath, and potential future licensees, to implement the new capabilities developed in this project in GreenPath’s RCx Building Suitcase, increasing its functionality and the savings resulting from its use. These enhancements will increase the value of the Suitcase to users and increase the potential market for its use and impacts in that impact.

32 ENERGY CONSERVATION, CONSUMPTION, AND UTILIZATI↗