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Structures of neurexophilin–neurexin complexes reveal a regulatory mechanism of alternative splicing
Neurexins are presynaptic, cell-adhesion molecules that specify the functional properties of synapses via interactions with trans-synaptic ligands. Neurexins are extensively alternatively spliced at six canonical sites that regulate multifarious ligand interactions, but the structural mechanisms underlying alternative splicing-dependent neurexin regulation are largely unknown. Here, we determined high-resolution structures of the complex of neurexophilin-1 and the second laminin/neurexin/sex-hormone-binding globulin domain (LNS2) of neurexin-1 and examined how alternative splicing at splice site #2 (SS2) regulates the complex. Our data reveal a unique, extensive, neurexophilin–neurexin binding interface that extends the jelly-roll β-sandwich of LNS2 of neurexin-1 into neurexophilin-1. The SS2A insert of LNS2 augments this interface, increasing the binding affinity of LNS2 for neurexophilin-1. Taken together, our data reveal an unexpected architecture of neurexophilin–neurexin complexes that accounts for the modulation of binding by alternative splicing, which in turn regulates the competition of neurexophilin for neurexin binding with other ligands.
Electronic Structure and Spin Correlations in Novel Magnetic Structures
The research has advanced understanding of the interrelation between the crystal structure and magnetism in several materials which are or can be of interest for the development of improved, specialized or more cost-effective permanent magnets, as well as in selected materials for biomedical and catalytic applications. Fundamental aspects of ferromagnetism were investigated for Mn-Ge, Co-V and Co-Ge nanoclusters and for melt-spun Co-Sn alloys. New solution-chemistry synthesis methods were designed and tested for Fe-Pt, Fe3C and Fe3O4 nanoparticles. Off-stoichiometric Laves phases in the Fe-Si-Zr, Fe-Nb and Fe-Ta systems, as well as Fe5(Si,Ge)B2 compounds were assessed as new rare-earth-free permanent magnet materials; all except the Fe-Si-Zr Laves phases were found to be promising enough to merit a further exploration. A new method for manufacturing rare-earth-free magnets based on the MnBi compound was developed; by purposely avoiding oxidation-sensitive fine single-crystalline powders, the new method yields magnets with a 50% larger energy storage capacity. Studies of rare-earth-lean permanent-magnet materials (lean compared to the currently predominant Nd-Fe-B materials) were focused on the tetragonal compound of the ThMn12 structure type and included both discovery and characterization of new formulations and exploration of new fabrication/processing techniques. Among the most significant achievements were successful preparation of a vanadium-lean SmFe11V compound, the first observation of thermomechanically induced texture in nanocrystalline Sm(Fe,V)12 alloys, and a breakthrough reduction-diffusion synthesis of Sm1-xZrx(Fe0.8Co0.2)11.2Ti0.8 single-crystal particles with a coercivity as high as 12.6 kOe. Several experiments aimed at improvement of the Nd-Fe-B magnet have also been undertaken including a five-fold increase of the coercivity through a grain-boundary diffusion treatment of a Nd10Fe84B6 nanocrystalline alloy.
A Structural engineering Graduate Degree Program with specialization in structural health monitoring & non-destructive evaluation [Slides]
The promotional presentation discusses the graduate degree program at the University of California, San Diego, Jacobs School of Engineering, related to structural engineering. Structural Health Monitoring (SHM) encompasses the integration of a broad range of technologies from sensing/actuating, data interrogation, and statistical modeling to enable system-level or component-level health assessment and predictive modeling. The course is available via distance learning to Los Alamos National Laboratory engineers.
Structures via Reasoning - Applying AI to Cryo Electron Microscopy to Reveal Structural Variability
There have been breakthroughs of latest cryo electron microscopy (cryo-EM) data analysis algorithms to classify cryo-EM image data. However, most of these cryo-EM reconstruction methods have focused on classifying distinctly different biomolecule structures. Here, we present our approaches of deep learning to differentiate homologous structures that are distinguishable only with inner morphological differences. We succeeded supervised classification of these subtly different homologues. However, we could not differentiate them with unsupervised methods. Here we discuss what further approaches are likely needed for successful unsupervised classification.
Supplementary material for Structure-performance relationships in lignin-based transesterification vitrimers: The role of lignin structural features
Structure-performance relationships in lignin-based transesterification vitrimers: The role of lignin structural features
CSGID Solves Structures and Identifies Phenotypes for Five Enzymes in Toxoplasma gondii
Toxoplasma gondii, an Apicomplexan parasite, causes significant morbidity and mortality, including severe disease in immunocompromised hosts and devastating congenital disease, with no effective treatment for the bradyzoite stage. To address this, we used the Tropical Disease Research database, crystallography, molecular modeling, and antisense to identify and characterize a range of potential therapeutic targets for toxoplasmosis. Phosphoglycerate mutase II (PGMII), nucleoside diphosphate kinase (NDK), ribulose phosphate 3-epimerase (RPE), ribose-5-phosphate isomerase (RPI), and ornithine aminotransferase (OAT) were structurally characterized. Crystallography revealed insights into the overall structure, protein oligomeric states and molecular details of active sites important for ligand recognition. Literature and molecular modeling suggested potential inhibitors and druggability. The targets were further studied with vivoPMO to interrupt enzyme synthesis, identifying the targets as potentially important to parasitic replication and, therefore, of therapeutic interest. Targeted vivoPMO resulted in statistically significant perturbation of parasite replication without concomitant host cell toxicity, consistent with a previous CRISPR/Cas9 screen showing PGM, RPE, and RPI contribute to parasite fitness. PGM, RPE, and RPI have the greatest promise for affecting replication in tachyzoites. These targets are shared between other medically important parasites and may have wider therapeutic potential.
tRNA ligase structure reveals kinetic competition between non-conventional mRNA splicing and mRNA decay
Yeast tRNA ligase (Trl1) is an essential trifunctional enzyme that catalyzes exon-exon ligation during tRNA biogenesis and the non-conventional splicing of HAC1 mRNA during the unfolded protein response (UPR). The UPR regulates the protein folding capacity of the endoplasmic reticulum (ER). ER stress activates Ire1, an ER-resident kinase/RNase, which excises an intron from HAC1 mRNA followed by exon-exon ligation by Trl1. The spliced product encodes for a potent transcription factor that drives the UPR. Here we report the crystal structure of Trl1 RNA ligase domain from Chaetomium thermophilum at 1.9 Å resolution. Structure-based mutational analyses uncovered kinetic competition between RNA ligation and degradation during HAC1 mRNA splicing. Incompletely processed HAC1 mRNA is degraded by Xrn1 and the Ski/exosome complex. We establish cleaved HAC1 mRNA as endogenous substrate for ribosome-associated quality control. We conclude that mRNA decay and surveillance mechanisms collaborate in achieving fidelity of non-conventional mRNA splicing during the UPR.
Influence of structure and material research on advanced launch systems weight, performance, and cost. Phase 3 - Design synthesis of recoverable launch vehicle structures
Structural design synthesis of recoverable launch vehicle structures
Structural analysis of the Injun 5 spacecraft structure
Structural analysis of Injun 5 spacecraft structure
Investigation of the possible structural over-test due to the gualification of spacecraft structures in a reverberant room
Determination of magnitude of structural over-test received by spacecraft structures when qualified in reverberant rooms
Advanced structural geometry studies. Part 2: A geometric transformation concept for expanding rigid structures
Development of expandable structures concepts for application to structures used in space missions - Part 2
Analytical and experimental investigation of aircraft metal structures reinforced with filamentary composites. Phase 2: Structural fatigue, thermal cycling, creep, and residual strength
Specimens representative of metal aircraft structural components reinforced with boron filamentary composites were manufactured and tested under cyclic loading, cyclic temperature, or continuously applied loading to evaluate some of the factors that affect structural integrity under cyclic conditions. Bonded, stepped joints were used throughout to provide composite-to-metal transition regions at load introduction points. Honeycomb panels with titanium or aluminum faces reinforced with unidirectional boron composite were fatigue tested at constant amplitude under completely reversed loading. Results indicated that the matrix material was the most fatigue-sensitive part of the design, with debonding initiating in the stepped joints. However, comparisons with equal weight all-metal specimens show a 10 to 50 times improved fatigue life. Fatigue crack propagation and residual strength were studied for several different stiffened panel concepts, and were found to vary considerably depending on the configuration. Composite-reinforced metal specimens were also subjected to creep and thermal cycling tests. Thermal cycling of stepped joint tensile specimens resulted in a ten percent decrease in residual strength after 4000 cycles.
Development and application of vibroacoustic structural data banks in predicting vibration design and test criteria for rocket vehicle structures
A method of predicting broadband random vibration criteria for components on space vehicles is presented. Large amounts of vibration and acoustic data obtained from flights and static firing tests of space vehicle were formulated into vibroacoustic data banks for structural categories of ring frame, skin stringer, and honeycomb. The vibration spectra with their associated acoustic spectra are normalized to a reference acoustic spectrum. The individual normalized spectra are grouped according to definite structural characteristics and statistically analyzed to form the vibroacoustic data banks described in this report. These data banks represent the reference vibration criteria available for determining the new vehicle vibration criteria.
Top down, bottom up structured programming and program structuring
New design and programming techniques for shuttle software. Based on previous Apollo experience, recommendations are made to apply top-down structured programming techniques to shuttle software. New software verification techniques for large software systems are recommended. HAL, the higher order language selected for the shuttle flight code, is discussed and found to be adequate for implementing these techniques. Recommendations are made to apply the workable combination of top-down, bottom-up methods in the management of shuttle software. Program structuring is discussed relevant to both programming and management techniques.
Structural Sizing of the EDIN0620 Body Components Using the APAS Structural Synthesis Computer Program
The use of a structural synthesis computer program to design components for a heavy lift launch vehicle is defined. A loads program was used to determine the vehicle shears, bending moments, and axial loads at two design loading conditions. A comparison was made between results from the structures program and the results of a weight estimating program which used historical data in determining component weights.
The dynamics and control of large flexible space structures. Volume 3, part B: The modelling, dynamics, and stability of large Earth pointing orbiting structures
The dynamics and stability of large orbiting flexible beams, and platforms and dish type structures oriented along the local horizontal are treated both analytically and numerically. It is assumed that such structures could be gravitationally stabilized by attaching a rigid light-weight dumbbell at the center of mass by a spring loaded hinge which also could provide viscous damping. For the beam, the small amplitude inplane pitch motion, dumbbell librational motion, and the anti-symmetric elastic modes are all coupled. The three dimensional equations of motion for a circular flat plate and shallow spherical shell in orbit with a two-degree-of freedom gimballed dumbbell are also developed and show that only those elastic modes described by a single nodal diameter line are influenced by the dumbbell motion. Stability criteria are developed for all the examples and a sensitivity study of the system response characteristics to the key system parameters is carried out.
Structural sizing considerations for large space structures
A number of missions for the space shuttle were proposed which involve placing large truss platforms on-orbit. These platforms range in size from tens of meters in span for reflector application to several thousand meters for solar power collector application. These proposed sizes and the operational requirements considered are unconventional in comparison to Earthbound structures and little information exists concerning efficient proportions of the structural elements forming the framework of the platforms. Such proportions are of major concern because they have a strong influence on the packaging efficiency and, thus, the transportation effectiveness of the shuttle. The present study is undertaken to: (1) identify efficient ranges of application of deployable and erectable platforms configured for shuttle transport to orbit, and (2) determine sensitivity to key parameters of minimum mass deployable and erectable platform designs.