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NASA NTRSDate not supplied

Reanalysis of Rat Data from Spacelab Life Sciences 2 (SLS-2) to Reveal Research Gaps in Spaceflight Data

Using and analyzing the legacy data obtained in space life sciences missions has the potential to provide researchers a complete picture of the molecular changes associated with space without further experimentation. This project’s objective is to extract, filter, organize, and analyze all Rattus norvegicus data and metadata obtained from Columbia’s Spacelab Life Sciences 2 (SLS-2, STS-58) mission to explore the ways that we can compile information from model organisms, in our case rats, to create a reliable model to understand biological mechanisms in response to these space flight changes. By reusing rare space legacy data coupled with data analysis techniques, we can combine individual preexisting datasets with current ones to gain new, comprehensive insights about the effects of spaceflight on our bodies. Our methods can also lead to the creation of a standardized pipeline that could be applied to other space life science datasets for analysis. In this review, every biological experiment conducted on rats in the SLS-2 Mission was studied with our pipeline to create a new biological library and model that could be used by scientists from around the world to make novel discoveries and develop new hypotheses from this priceless information without the limitation of the costs of spaceflight experimentation.

rats↗

DOE OSTI2024

Canopy spectral reflectance, Kougarok and Teller sites, Seward Peninsula, Alaska, 2016

Measurements of full-spectrum (350-2500 nm) canopy spectral reflectance of Arctic plant species at the Teller and Kougarok NGEE-Arctic sites, Seward Peninsula, Alaska. Spectra were collected in July 2016 using an SVC HR-2014i spectroradiometer together with a Spectralon white plate to calibrate each measurement under variable illumination conditions. The locations of the 43 measurement targets are provided as latitude and longitude recorded by the spectroradiometer internal GPS. This data package comprises .csv data and metadata files, and the SVC instrument output (.sig in .zip). The Next-Generation Ecosystem Experiments: Arctic (NGEE Arctic), was a research effort to reduce uncertainty in Earth System Models by developing a predictive understanding of carbon-rich Arctic ecosystems and feedbacks to climate. NGEE Arctic was supported by the Department of Energy's Office of Biological and Environmental Research. The NGEE Arctic project had two field research sites: 1) located within the Arctic polygonal tundra coastal region on the Barrow Environmental Observatory (BEO) and the North Slope near Utqiagvik (Barrow), Alaska and 2) multiple areas on the discontinuous permafrost region of the Seward Peninsula north of Nome, Alaska. Through observations, experiments, and synthesis with existing datasets, NGEE Arctic provided an enhanced knowledge base for multi-scale modeling and contributed to improved process representation at global pan-Arctic scales within the Department of Energy's Earth system Model (the Energy Exascale Earth System Model, or E3SM), and specifically within the E3SM Land Model component (ELM).

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2024

ELM-Wet: Inclusion of a wetland landunit with sub-grid representation of eco-hydrological patches and hydrological forcing in E3SM Land Model (ELM)

Wetlands emit the most biogenic methane (CH4) and present the greatest uncertainty in the global CH4 budget. Modeling these emissions is challenging due to the temporal and spatial variability in wetland structure and CH4 flux rates, along with complex interactions among hydrological, ecological, meteorological, and microbial processes that govern CH4 dynamics. To address these issues, we aim to enhance the accuracy of wetland representation in the U.S. Department of Energy’s Exascale Earth System Model (E3SM) Land Model, ELM. This effort led to the development of ELM-Wet, which incorporates a dedicated wetland landunit with subgrid representation of eco-hydrological patch types. We implement wetland-specific hydrology by imposing site-specific constraints on surface water levels, thereby allowing different patches to sustain varying depths of inundation. Additionally, we refined the calculation of aerenchyma transport diffusivity based on observed conductance across different vegetation types. We validated these enhancements through site-specific simulations of a coastal freshwater wetland, the Salvador WMA Freshwater Marsh (Ameriflux, site ID US-LA2), located in the coast of Louisiana (29.85N,90.29W) at an elevation of 0 m. The site was simulated with ELM-Wet and the default version ELMv1. We use Bayesian Optimization to parameterize CO2 and CH4 fluxes. Eddy covariance observations of CO2 and CH4 fluxes from 2012-2013 were used to train the model and data from 2021 were used for validation. In this repository, we include all the output of all the simulations performed using different versions of ELMv1 and ELM-Wet, all input required to the model, and the Matlab scripts we used to processed the output data. ELM-Wet_flmd.csv includes a detailed description of the datasets files.

54 ENVIRONMENTAL SCIENCES↗

NASA NTRS2012

SBUV version 8.6 Retrieval Algorithm: Error Analysis and Validation Technique

SBUV version 8.6 algorithm was used to reprocess data from the Back Scattered Ultra Violet (BUV), the Solar Back Scattered Ultra Violet (SBUV) and a number of SBUV/2 instruments, which 'span a 41-year period from 1970 to 2011 (except a 5-year gap in the 1970s)[see Bhartia et al, 2012]. In the new version Daumont et al. [1992] ozone cross section were used, and new ozone [McPeters et ai, 2007] and cloud climatologies Doiner and Bhartia, 1995] were implemented. The algorithm uses the Optimum Estimation technique [Rodgers, 2000] to retrieve ozone profiles as ozone layer (partial column, DU) on 21 pressure layers. The corresponding total ozone values are calculated by summing ozone columns at individual layers. The algorithm is optimized to accurately retrieve monthly zonal mean (mzm) profiles rather than an individual profile, since it uses monthly zonal mean ozone climatology as the A Priori. Thus, the SBUV version 8.6 ozone dataset is better suited for long-term trend analysis and monitoring ozone changes rather than for studying short-term ozone variability. Here we discuss some characteristics of the SBUV algorithm and sources of error in the SBUV profile and total ozone retrievals. For the first time the Averaging Kernels, smoothing errors and weighting functions (or Jacobians) are included in the SBUV metadata. The Averaging Kernels (AK) represent the sensitivity of the retrieved profile to the true state and contain valuable information about the retrieval algorithm, such as Vertical Resolution, Degrees of Freedom for Signals (DFS) and Retrieval Efficiency [Rodgers, 2000]. Analysis of AK for mzm ozone profiles shows that the total number of DFS for ozone profiles varies from 4.4 to 5.5 out of 6-9 wavelengths used for retrieval. The number of wavelengths in turn depends on solar zenith angles. Between 25 and 0.5 hPa, where SBUV vertical resolution is the highest, DFS for individual layers are about 0.5.

Kramarova, N. A.↗

DOE OSTI2020

Modeling the impact of riparian hollows on river corridor nitrogen exports, Frontiers in Water: Dataset

This package contains all reactive transport simulation outputs used in "Modeling the impact of riparian hollows on river corridor nitrogen exports" (Rogers, D.B., et al., 2021). The simulation outputs reflect hydrological and biogeochemical behavior of a single, generalized riparian hollow located in the intra-meander region of a sub-alpine floodplain under transient hydrological conditions. The context for, purpose of, and conclusions drawn from this model are detailed in Rogers, D.B., et al., 2021.The .zip file contains simulation outputs for each of the five time periods analyzed (see metadata for specific dates), with each folder representing one continuous simulation period. Within each folder are the raw simulation outputs, which are comprised of hundreds of files. Files ending in ".vtk" are best visualized and analyzed using ParaView (https://www.paraview.org). All other files are best viewed or analyzed using R. For a detailed description of the meaning of each file, refer to the ".fls" file located in each folder.

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2024

Canopy reflectance spectra and photographs (raw data), Seward Peninsula, Alaska, 2022

Measurements of full-range (350–2500 nm) canopy spectral reflectance of Arctic plant species, plots, and transects at the Next Generation Ecosystem Experiment Arctic (NGEE Arctic) Teller Mile Marker (MM27) and Kougarok Fire Complex (KFC) sites, Seward Peninsula, Alaska. Spectra were collected in July 2022 using a handheld SVC HR-2014i spectroradiometer. All spectra were collected as calibrated surface radiance and converted to surface reflectance using 99.99% reflective Spectralon white reference standard. This data package includes unprocessed instrument output of the spectra signals (.sig) and, for some canopy measurements, photographs of the target taken by the SVC instrument camera or handheld digital camera (.jpg), GPS locations and file metadata (.csv).The Next-Generation Ecosystem Experiments: Arctic (NGEE Arctic), was a 15-year research effort (2012-2027) to reduce uncertainty in Earth System Models by developing a predictive understanding of carbon-rich Arctic ecosystems and feedbacks to climate. NGEE Arctic was supported by the Department of Energy's Office of Biological and Environmental Research.The NGEE Arctic project had two field research sites: 1) located within the Arctic polygonal tundra coastal region on the Barrow Environmental Observatory (BEO) and the North Slope near Utqiagvik (Barrow), Alaska and 2) multiple areas on the discontinuous permafrost region of the Seward Peninsula north of Nome, Alaska.Through observations, experiments, and synthesis with existing datasets, NGEE Arctic provided an enhanced knowledge base for multi-scale modeling and contributed to improved process representation at global pan-Arctic scales within the Department of Energy's Earth system Model (the Energy Exascale Earth System Model, or E3SM), and specifically within the E3SM Land Model component (ELM).

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2025

Metagenome-assembled genomes from topsoils collected during NEON campaign in East River, CO (06/14/2018-06/28/2018)

The Watershed Function Science Focus Area (WF SFA) at Lawrence Berkeley National Lab is working to build a mechanistic understanding of the distribution and dynamics of biogeochemical processes in mountainous watersheds and their response to perturbation. In June 2018, the NEON (National Ecological Observatory Network) Airborne Observatory Platform (AOP) performed a taskable airborne imaging campaign to collect visible to shortwave infrared (VSWIR) imaging spectroscopy and LiDAR data across 330 km2 in the Upper East River at Crested Butte, CO. We conducted a parallel ground sampling campaign to sample vegetation traits, as well as soil physical, chemical, and microbiological characteristics. We collected these samples from 438 sites across 12 locations spanning much of the elevation, topographic, and geologic variability across the study area. A subset of 250 samples were used for soil metagenomics which is presented here. In addition, at each site, vegetation samples were collected to measure species-specific leaf water content and leaf mass area, foliar elemental composition and foliar CN stable isotope ratios. Soil samples were collected to measure soil physical properties which include bulk density and soil texture analysis. A suite of soil chemical properties was measured from the samples collected at each site, including pH, organic matter, concentrations exchangeable cations, total elemental composition, and the concentrations of extractable N pools (e.g. total free amino acids, ammonium, nitrate, dissolved organic N, and total dissolved N). Additionally, we have measured soil microbial biomass CN stoichiometry. Here, we present 1982 metagenome-assembled genomes (MAGs) for the bacterial and archaeal community from topsoil collected from during NEON 2018 campaign. All metagenomes were sequenced at JGI (Joint Genome Institute) (GOLD Study ID: Gs0149986). Metagenomes were assembled using JGI Metagenome Workflow (10.1128/mSystems.00804-20). The dataset includes (1) zip files for 1982 MAG fasta files (neon_genomes1-5.tar.gz, split into 5 tarballs to keep tarballs under 0.5 GB), (2) neon_Gs0149986_samples_soilproperties_metagenomes.csv: the sample information together with the accession numbers for the underlying metagenomes and the associated soil physical and chemical measurements in NMDC (National Microbiome Data Collaborative) compliant format, (3) neon_Gs0149986.kml: location bounding box file for the sampled locations, (4) samples.csv: sample metadata file used to register Internationall Generic Sample Numbers (IGSNs), (5) flmd.csv: file level metadata file, and (6) dd.csv: data dictionary file. This work was supported by the Watershed Function Science Focus Area at Lawrence Berkeley National Laboratory funded by the US Department of Energy, Office of Science, Biological and Environmental Research under Contract No. DE-AC02-05CH11231.

2018 NEON and 2025 CHESS Campaigns↗

DOE OSTI2020

SPRUCE High-Resolution Minirhizotrons in an Experimentally-Warmed Peatland Provide an Unprecedented Glimpse at Fine Roots and their Fungal Partners: Supporting Data

Images were collected using first of their kind, non-destructive, high-resolution automated minirhizotrons (RhizoSystems, LLC) to assess the response of plant fine-root and fungal mycelium dynamics to elevated temperatures after 4-6 years of whole-ecosystem warming and exposure to elevated carbon dioxide concentrations (e[CO2]) in a peat bog where the SPRUCE (Spruce and Peatland Responses Under Changing Environments) experiment is located. We focused on two SPRUCE experimental plots: Plot 10 has elevated temperature (+9°C) and plot 19 is a control (+0°C). Both have elevated carbon dioxide (e[CO2]). Changes in root and fungal abundance with warming were estimated from a timeseries of landscape-level mosaiced images for each plot by measuring the proportional abundance of five belowground classes: fine roots of vascular plants, ectomycorrhizas, fungal hyphae, fungal rhizomorphs, and fungal sporocarps. To examine root and fungal phenology responses to warming, the length per individual root or fungal structure (except fungal hyphae that did not grow linearly but rather increased in areal coverage) were measured per image area of a set of timeseries patch-level mosaiced images for each plot. The experimental work was conducted in a Picea mariana [black spruce] – Sphagnum spp. bog forest in northern Minnesota, 40 km north of Grand Rapids, in the USDA Forest Service Marcell Experimental Forest (MEF). This ecosystem, which is located at the southern margin of the boreal forest, is considered especially vulnerable to climate change and anticipated to be near its tipping point. These data were used in analyses published in Defrenne et al (2021). This dataset contains 5 data files in comma-separate values (*.csv) format and a compressed folder (*.zip) containing 383 JPEG (*.jpg) images. Data files contain landscape-level assessment of belowground class abundance, patch-level growth phenology, and environmental variables (originally published in Hanson et al., 2016 and Hanson et al 2020). Images were collected with automated minirhizotrons and analyzed for phenology. Additional metadata are provided: 5 data dictionaries and a file-level metadata file in comma-separate values (.csv) format and a user guide in PDF (*.pdf) format.

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2024

Leaf area index (LAI), Teller site, Seward Peninsula, Alaska, 2022

Leaf area index (LAI) sampled from locations on the Teller MM27 NGEE-Arctic site, Seward Peninsula, Alaska. These data were collected in support of the ongoing NGEE-Arctic and NASA ABoVE data synthesis work. Samples were collected in July 2022 at 100 locations that cover the down slope half of Teller MM27 hillslope. This data package includes sample information and LAI data (.csv), an ESRI shape file (.shp) and Keyhole Markup Language (.kml) that define the location and area of each LAI measurement. Metadata files include data descriptions (_dd.csv) for tabular data, file level metadata (.csv), and methods and the instrument manual (.pdf). The Next-Generation Ecosystem Experiments: Arctic (NGEE Arctic), was a research effort to reduce uncertainty in Earth System Models by developing a predictive understanding of carbon-rich Arctic ecosystems and feedbacks to climate. NGEE Arctic was supported by the Department of Energy's Office of Biological and Environmental Research. The NGEE Arctic project had two field research sites: 1) located within the Arctic polygonal tundra coastal region on the Barrow Environmental Observatory (BEO) and the North Slope near Utqiagvik (Barrow), Alaska and 2) multiple areas on the discontinuous permafrost region of the Seward Peninsula north of Nome, Alaska. Through observations, experiments, and synthesis with existing datasets, NGEE Arctic provided an enhanced knowledge base for multi-scale modeling and contributed to improved process representation at global pan-Arctic scales within the Department of Energy's Earth system Model (the Energy Exascale Earth System Model, or E3SM), and specifically within the E3SM Land Model component (ELM).

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2024

UAS remote sensing (Autel EVO II platform): Red-green-blue (RGB) imagery and derived products (Level 0-2 data), Seward Peninsula, Alaska, 2022

Airborne remote sensing data collected using a optical red-green-blue (RGB) sensor installed on an Autel EVO II unoccupied aerial system (UAS). This package includes data from 15 flights flown over the NGEE-Arctic Council Mile Marker (MM) 71, Kougarok MM64, and Teller MM27 sites on the Seward Peninsula, Alaska USA, in July 2022. This package provides the Level 0 (raw, unprocessed) data collected by the platform and sensors, and Level 1-2 processed products including digital surface models (DSM), photo orthomosaics, canopy height models (CHM) and digital terrain models (DTM). Ancillary aircraft data, flight mission parameters, and general flight conditions provided by the onboard flight and data collection computers are also included. Data and metadata are provided as image (*.jpg, *.tif), point cloud (*.laz), tabular (*.csv) and *.pdf formats. Raw images are compressed as tar.gz. The metadata documents contain flight campaign, platform, sensor, flight and file metadata, along with a description of the data and file naming scheme.The Next-Generation Ecosystem Experiments: Arctic (NGEE Arctic), was a 15-year research effort (2012-2027) to reduce uncertainty in Earth System Models by developing a predictive understanding of carbon-rich Arctic ecosystems and feedbacks to climate. NGEE Arctic was supported by the Department of Energy's Office of Biological and Environmental Research.The NGEE Arctic project had two field research sites: 1) located within the Arctic polygonal tundra coastal region on the Barrow Environmental Observatory (BEO) and the North Slope near Utqiagvik (Barrow), Alaska and 2) multiple areas on the discontinuous permafrost region of the Seward Peninsula north of Nome, Alaska.Through observations, experiments, and synthesis with existing datasets, NGEE Arctic provided an enhanced knowledge base for multi-scale modeling and contributed to improved process representation at global pan-Arctic scales within the Department of Energy's Earth system Model (the Energy Exascale Earth System Model, or E3SM), and specifically within the E3SM Land Model component (ELM).

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2024

UAS remote sensing (Autel EVO II platform): Red-green-blue (RGB) imagery and derived products (Level 0-2 data), Seward Peninsula, Alaska, 2023

Airborne remote sensing data collected using a optical red-green-blue (RGB) sensor installed on an Autel EVO II unoccupied aerial system (UAS). This package includes data from 4 flights flown over the NGEE-Arctic Council Mile Marker (MM) 71 and Teller MM27 sites on the Seward Peninsula, Alaska USA, in July 2023. This package provides the Level 0 (raw, unprocessed) data collected by the platform and sensors, and Level 1-2 processed products including digital surface models (DSM), photo orthomosaics, canopy height models (CHM) and digital terrain models (DTM). Ancillary aircraft data, flight mission parameters, and general flight conditions provided by the onboard flight and data collection computers are also included. Data and metadata are provided as image (*.jpg, *.tif), point cloud (*.laz), tabular (*.csv) and *.pdf formats. Raw images are compressed as tar.gz. The metadata documents contain flight campaign, platform, sensor, flight and file metadata, along with a description of the data and file naming scheme.The Next-Generation Ecosystem Experiments: Arctic (NGEE Arctic), was a 15-year research effort (2012-2027) to reduce uncertainty in Earth System Models by developing a predictive understanding of carbon-rich Arctic ecosystems and feedbacks to climate. NGEE Arctic was supported by the Department of Energy's Office of Biological and Environmental Research.The NGEE Arctic project had two field research sites: 1) located within the Arctic polygonal tundra coastal region on the Barrow Environmental Observatory (BEO) and the North Slope near Utqiagvik (Barrow), Alaska and 2) multiple areas on the discontinuous permafrost region of the Seward Peninsula north of Nome, Alaska.Through observations, experiments, and synthesis with existing datasets, NGEE Arctic provided an enhanced knowledge base for multi-scale modeling and contributed to improved process representation at global pan-Arctic scales within the Department of Energy's Earth system Model (the Energy Exascale Earth System Model, or E3SM), and specifically within the E3SM Land Model component (ELM).

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2025

Carbon flux measurements from chambers collected between April to October 2023 at Old Woman Creek, Huron, Ohio

This dataset contains carbon dioxide and methane gas flux measurements collected via chamber sampling at Old Woman Creek National Estuarine Research Reserve in Huron, OH. These data were generated to understand temporal and vegetation patterns associated with wetland carbon cycling. Specifically, this dataset intends to answer how carbon dioxide and methane fluxes change monthly and hourly across sites with vegetation and without vegetation. Data includes chamber measurements that were measured in both sites with vegetation and without vegetation and that were collected hourly (7 AM to 7 PM or 5 AM to 10 PM and monthly (April to October). The file soilrespiration_data23.csv contains these data, and the metadata file (soilrespiration_chammetadata23.csv) and location metadata file (soilrespiration_locationmetadata23.csv) have information on locations where the chambers were placed and sampled in the wetland. Data processing was done on raw methane fluxes (Flux_CH4) to remove the influence of ebullition (Flux_CH4_ebullition) to get a diffusive flux (Flux_CH4_diffusive).

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2024

Thaw depth, soil moisture, and vegetation height, Teller and Kougarok sites, Seward Peninsula, Alaska, 2022

Thaw depth, soil moisture, and vegetation height sampled from locations on the Teller MM27, Kougarok MM80, and Kougarok MM82 NGEE-Arctic sites, Seward Peninsula, Alaska. These data were collected in support of the ongoing NGEE-Arctic and NASA ABoVE data synthesis work. Samples were collected in July 2022, including 6 transects covering the entire Teller MM27 watershed and 4 transects covering 4 thaw ponds at Kougarok MM80 and MM82. This data package includes sample information and thaw depth, soil moisture, vegetation height data (.csv). Metadata files include data descriptions (_dd.csv) for tabular data and file level metadata (.csv). The Next-Generation Ecosystem Experiments: Arctic (NGEE Arctic), was a research effort to reduce uncertainty in Earth System Models by developing a predictive understanding of carbon-rich Arctic ecosystems and feedbacks to climate. NGEE Arctic was supported by the Department of Energy's Office of Biological and Environmental Research. The NGEE Arctic project had two field research sites: 1) located within the Arctic polygonal tundra coastal region on the Barrow Environmental Observatory (BEO) and the North Slope near Utqiagvik (Barrow), Alaska and 2) multiple areas on the discontinuous permafrost region of the Seward Peninsula north of Nome, Alaska. Through observations, experiments, and synthesis with existing datasets, NGEE Arctic provided an enhanced knowledge base for multi-scale modeling and contributed to improved process representation at global pan-Arctic scales within the Department of Energy's Earth system Model (the Energy Exascale Earth System Model, or E3SM), and specifically within the E3SM Land Model component (ELM).

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2024

Vegetation Warming Experiment: Chamber and ambient plot digital camera imagery for vegetation phenology, Utqiagvik (Barrow), Alaska, 2021

Time lapse photography of experimental plots within five warming chambers (ZPWs) and paired control plots located on the Barrow Environmental Observatory (BEO), Utqiagvik, Alaska. Images were recorded from 17 June to 19 September, 2021 to capture vegetation dynamics during the growing season. Vegetation phenology, including green up and senescence were captured. Images were recorded daily at 30 minute intervals, from 09:00 - 16:30 Alaska daylight time (AKDT, UTC-8), using Wingscapes TimelapseCam Pro cameras. The target species was Carex aquatilis. Individual jpg images from each camera have been combined in zip format. The data package includes a metadata document with example fields of view from each camera (*.pdf). The Next-Generation Ecosystem Experiments: Arctic (NGEE Arctic), was a research effort to reduce uncertainty in Earth System Models by developing a predictive understanding of carbon-rich Arctic ecosystems and feedbacks to climate. NGEE Arctic was supported by the Department of Energy's Office of Biological and Environmental Research. The NGEE Arctic project had two field research sites: 1) located within the Arctic polygonal tundra coastal region on the Barrow Environmental Observatory (BEO) and the North Slope near Utqiagvik (Barrow), Alaska and 2) multiple areas on the discontinuous permafrost region of the Seward Peninsula north of Nome, Alaska. Through observations, experiments, and synthesis with existing datasets, NGEE Arctic provided an enhanced knowledge base for multi-scale modeling and contributed to improved process representation at global pan-Arctic scales within the Department of Energy's Earth system Model (the Energy Exascale Earth System Model, or E3SM), and specifically within the E3SM Land Model component (ELM).

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2024

Estimating snow cover from high-resolution satellite imagery by thresholding blue wavelengths: Supporting Data

The extent and duration of snow cover is predicted to be altered as the climate changes. Developing high-resolution estimates of snow cover change is crucial for estimating changes in snow cover and the effects of these changes on watershed and ecosystems processes. Remote sensing tools have been a common method for rapidly mapping snow covered area (SCA) across a landscape. The most common remote sensing method for estimating SCA uses satellite-based calculations of the normalized difference snow index (NDSI), which relies on spectral measurements in the shortwave-infrared wavelengths (SWIR). NDSI is effective at catchment- to regional-scale estimates of SCA, but due to spatial resolution limitations of SWIR measurements, NDSI cannot be used to assess fine-scale SCA. In this work, we develop a new algorithm, called the Blue Snow Threshold (BST) algorithm, that maps high-resolution SCA by calculating a threshold on the blue wavelengths from high-resolution satellite imagery. This data package includes Orthorectified IKONOS-2 imagery (IkonosTestImage.tif) from August 14, 2004 at 1.00 meters Ground Sample Distance for Cook Inlet, Alaska (59.966414 , -152.982975). The Blue Snow Threshold algorithm (BST.py) was then used to produce a snow cover estimate (IkonosTestImage_BST.tif) for this study area. Additional imagery metadata is included in the ImageInfo.txt file. See Thaler et al., 2023 (https://doi.org/10.1016/j.rse.2022.113403) for more information about the BST algorithm.The Next-Generation Ecosystem Experiments: Arctic (NGEE Arctic), was a 15-year research effort (2012-2027) to reduce uncertainty in Earth System Models by developing a predictive understanding of carbon-rich Arctic ecosystems and feedbacks to climate. NGEE Arctic was supported by the Department of Energy's Office of Biological and Environmental Research.The NGEE Arctic project had two field research sites: 1) located within the Arctic polygonal tundra coastal region on the Barrow Environmental Observatory (BEO) and the North Slope near Utqiagvik (Barrow), Alaska and 2) multiple areas on the discontinuous permafrost region of the Seward Peninsula north of Nome, Alaska.Through observations, experiments, and synthesis with existing datasets, NGEE Arctic provided an enhanced knowledge base for multi-scale modeling and contributed to improved process representation at global pan-Arctic scales within the Department of Energy's Earth system Model (the Energy Exascale Earth System Model, or E3SM), and specifically within the E3SM Land Model component (ELM).

54 ENVIRONMENTAL SCIENCES↗

NASA NTRSDate not supplied

Expanding Repository Data Available For Sharing and Knowledge Discovery

Some of the hardest space biology and space health challenges require data-intensive, bioinformatic, meta-analytical, and computer-assisted research approaches. These challenges include examining interdisciplinary space life science research across experiments and across interacting spaceflight hazards (radiation, altered gravity, confinement, hostile-closed environments, distance-duration from Earth). The approaches to confront these challenges involve mining multiple datasets simultaneously from various hierarchical organizations of biological complexity, all while concurrently evaluating how experimental design factors affect endpoints of standard assays. To enable this field, it is essential that principal investigators (PIs) submit data in a structure so it can be maximally re-used. The purpose of the NASA Ames Life Sciences Data Archive (ALSDA) is to collect, curate, and make publicly available all non-human space-relevant biological data. ALSDA must also ensure data are open-access, and maximally findable, accessible, interoperable, and reusable (FAIR). The scope of ALSDA data collected and submitted by PIs include subject and study design metadata, assay metadata parameters, raw and processed assay data, assay imagery/video, and subject-experienced mission data telemetry (radiation, temperature, humidity, acoustics, vibrations, etc.). ALSDA recently integrated into a collaborative group of Open Science projects to facilitate a suite of new tools and workflows that will improve data submission, accessibility, and reusability by implementing digital data submission agreements, and adopting the data management system originally developed by NASA GeneLab. ALSDA intends to bring current biological repository data and all future collected data into this new scientific data reuse reality. This new suite of tools will enable ALSDA to deploy a science curation system using scientific assay configurations for the data submission portal. It will capture essential assay parameters according to established standards in each sub-field within biology. The submission portal expedites data collection by enhancing ease of PI data submission, providing a user interface and specificity for which data is to be submitted. Data submissions can be brought into cutting-edge informatic analysis portals to enable mining of physiological, behavioral, biochemical, and imaging datasets in conjunction with ‘omics-level datasets. As ALSDA datasets are submitted, curated, and published (e.g., micro-computed tomography, histology, pulse oximetry, serum metabolites, magnetic resonance imaging, intraocular pressure, novel object recognition, etc.), the merging together of spaceflight data along this multi-hierarchical complexity of biology will enable informatics and data-intensive approaches resulting in knowledge discoveries across missions, space hazards, and biological disciplines.

Biology↗

NASA NTRSDate not supplied

Expanding Repository Data Available For Sharing And Knowledge Discovery

life science↗

DOE OSTI2021

Closing the Gap between FAIR Data Repositories and Hierarchical Data Formats

Many in the scientific community, particularly in publicly funded research, are pushing to adhere to more accessible data standards to maximize the findability, accessibility, interoperability, and reusability (FAIR) of scientific data, especially with the growing prevalence of machine learning augmented research. Online FAIR data repositories, such as the Open Science Framework (OSF), help facilitate the adoption of these standards by providing frameworks for storage, access, search, APIs, and other features that create organized hubs of scientific data. However, the wider acceptance of such repositories is hindered by the lack of support of hierarchical data formats, such as Technical Data Management Streaming (TDMS) and Hierarchical Data Format 5 (HDF5), that many researchers rely on to organize their datasets. Various tools and strategies should be used to allow hierarchical data formats, FAIR data repositories, and scientific organizations to work more seamlessly together. A pilot project at Los Alamos National Laboratory (LANL) addresses the disconnect between them by integrating the OSF FAIR data repository with hierarchical data renderers, extending support for additional file types in their framework. The multifaceted interactive renderer displays a tree of metadata alongside a table and plot of the data channels in the file. This allows users to quickly and efficiently load large and complex data files directly in the OSF webapp. Users who are browsing files can quickly and intuitively see the files in the way they or their colleagues structured the hierarchical form and immediately grasp their contents. This solution helps bridge the gap between hierarchical data storage techniques and FAIR data repositories, making both of them more viable options for scientific institutions like LANL which have been put off by the lack of integration between them.

97 MATHEMATICS AND COMPUTING↗