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NASA NTRS1985

What are mycoplasmas - The relationship of tempo and mode in bacterial evolution

In phenotype the mycoplasmas are very different from ordinary bacteria. However, genotypically (i.e., phylogenetically) they are not. On the basis of ribosomal RNA homologies the mycoplasmas belong with the clostridia, and indeed have specific clostridial relatives. Mycoplasmas are, however, unlike almost all other bacteria in the evolutionary characteristics of their ribosomal RNAs. These RNAs contain relatively few of the highly conserved oligonucleotide sequences characteristic of normal eubacterial ribosomal RNAs. This is interpreted to be a reflection of an elevated mutation rate in mycoplasma lines of descent. A general consequence of this would be that the variation associated with a mycoplasma population is augmented both in number and kind, which in turn would lead to an unusual evolutionary course, one unique in all respects. Mycoplasmas, then, are actually tachytelic bacteria. The unusual evolutionary characteristics of their ribosomal RNAs are the imprints of their rapid evolution.

Woese, C. R.↗
NASA NTRS1991

Thioredoxin and evolution

Comparisons of primary structure have revealed significant homology between the m type thioredoxins of chloroplasts and the thioredoxins from a variety of bacteria. Chloroplast thioredoxin f, by comparison, remains an enigma: certain residues are invariant with those of the other thioredoxins, but a phylogenetic relationship to bacterial or m thioredoxins seems distant. Knowledge of the evolutionary history of thioredoxin f is, nevertheless, of interest because of its role in photosynthesis. Therefore, we have attempted to gain information on the evolutionary history of chloroplast thioredoxin f, as well as m. Our goal was first to establish the utility of thioredoxin as a phylogenetic marker, and, if found suitable, to deduce the evolutionary histories of the chloroplast thioredoxins. To this end, we have constructed phylogenetic (minimal replacement) trees using computer analysis. The results show that the thioredoxins of bacteria and animals fall into distinct phylogenetic groups - the bacterial group resembling that derived from earlier 16s RNA analysis and the animal group showing a cluster consistent with known relationships. The chloroplast thioredoxins show a novel type of phylogenetic arrangement: one m type aligns with its counterpart of eukaryotic algae, cyanobacteria and other bacteria, whereas the second type (f type) tracks with animal thioredoxin. The results give new insight into the evolution of photosynthesis.

Buchanan, B. B.↗
NASA NTRS1992

Ultraviolet studies of Cepheids

We discuss whether with new evolutionary tracks we still have a problem fitting the Cepheids and their evolved companions on the appropriate evolutionary tracks. We find that with the Bertelli et al. tracks with convective overshoot by one pressure scale height the problem is essentially removed, though somewhat more mixing would give a better fit. By using the results of recent nonlinear hydrodynamic calculations, we find that we also have no problem matching the observed pulsation periods of the Cepheids with those expected from their new evolutionary masses, provided that Cepheids with periods less than 9 days are overtone pulsators. We investigate possible mass loss of Cepheids from UV studies of the companion spectrum of S Mus and from the ultraviolet spectra of the long period Cepheid l Carinae. For S Mus with a period of 9.6 days we derive an upper limit for the mass loss of M less than 10(exp -9) solar mass, if a standard velocity law is assumed for the wind. For l Carinae with a period of 35.5 days we find a probable mass loss of M is approximately 10(exp -5+/-2) solar mass.

Boehm-Vitense, Erika↗
NASA NTRS1993

Trace of planetary nebula evolution by distance-independent parameters

Using existing infrared and radio data on a sample of 432 planetary nebulae, we derived a number of distance-independent parameters for comparison with evolutionary models of planetary nebulae. We find that many of the observed properties of planetary nebulae can be explained by current central star evolutionary models, even if the time scales are subject to significant change by a factor of up to an order of magnitude. Specifically, we find that the evolutionary tracks are well separated in the radio surface brightness-central star temperature plane, therefore allowing us to determine the core mass of individual planetary nebulae. We also obtain the luminosity and gravity of the central stars of individual nebulae, from their temperature and core mass, without relying on the distance assumptions. We find that our results of the core mass are in good agreement with those of Mendez et al. (1992) and Tylenda et al. (1991). A systematic, large discrepancy is found between the luminosity found in this work and that found by Gathier and Pottasch (1986).

Zhang, C. Y.↗
NASA NTRS1994

Counts of galaxies in a merger model

A model for the photometric evolution of galaxies has been developed and has been applied to the problem of galaxy counts. The integrated colors of galaxies are calculated using the most recently computed evolutionary tracks from Maeder and collaborators complemented with evolutionary tracks derived by other authors. The asymptotic giant branch lifetime is left as a free parameter. A series of cosmological models using different values of the cosmological constant, lambda(sub 0), and the density parameter, omega(sub 0), have been computed. The universality hypothesis of the luminosity function of galaxies has been abandoned. The influence of galaxy merging on the counts has been considered in a simple manner by assuming that the number of strongly interacting galaxies in a comoving volume increases with redshift as a power law given by (1 + z)(exp 3.8). Taking a Schechter parametrization for the luminosity function of the different types of galaxies, we are able to reproduce the observations reasonably well. We have also considered models with a Gaussian distribution for the luminosity function of the brighter galaxies that provide a poorer fit to the observations. It is shown that galaxy count data are not yet able to make unambiguous cosmological statements since evolutionary assumptions are critical. In particular, an omega(sub 0) = 1, lambda(sub 0) = 0 cosmology is shown to be consistent with the data.

Colin, P.↗
NASA NTRS1994

Nonaxisymmetric evolution in protostellar disks

We present a two-dimensional, multigridded hydrodynamical simulation of the collapse of an axisymmetric, rotating, 1 solar mass protostellar cloud, which forms a resolved, hydrotastic disk. The code includes the effects of physical viscosity, radiative transfer and radiative acceleration but not magnetic fields. We examine how the disk is affected by the inclusion of turbulent viscosity by comparing a viscous simulation with an inviscid model evolved from the same initial conditions, and we derive a disk evolutionary timescale on the order of 300,000 years if alpha = 0.01. Effects arising from non-axisymmetric gravitational instabilities in the protostellar disk are followed with a three-dimensional SPH code, starting from the two-dimensional structure. We find that the disk is prone to a series of spiral instabilities with primary azimulthal mode number m = 1 and m = 2. The torques induced by these nonaxisymmetric structures elicit material transport of angular momentum and mass through the disk, readjusting the surface density profile toward more stable configurations. We present a series of analyses which characterize both the development and the likely source of the instabilities. We speculate that an evolving disk which maintains a minimum Toomre Q-value approximately 1.4 will have a total evolutionary span of several times 10(exp 5) years, comparable to, but somewhat shorter than the evolutionary timescale resulting from viscous turbulence alone. We compare the evolution resulting from nonaxisymmetric instabilities with solutions of a one-dimensional viscous diffusion equation applied to the initial surface density and temperature profile. We find that an effective alpha-value of 0.03 is a good fit to the results of the simulation. However, the effective alpha will depend on the minimum Q in the disk at the time the instability is activated. We argue that the major fraction of the transport characterized by the value of alpha is due to the action of gravitational torques, and does not arise from inherent viscosity within the smoothed particle hydrodynamics method.

Laughlin, Gregory↗
NASA NTRS1994

Rapidly rotating polytropes in general relativity

We construct an extensive set of equilibrium sequences of rotating polytropes in general relativity. We determine a number of important physical parameters of such stars, including maximum mass and maximum spin rate. The stability of the configurations against quasi-radial perturbations is diagnosed. Two classes of evolutionary sequences of fixed rest mass and entropy are explored: normal sequences which behave very much like Newtonian evolutionary sequences, and supramassive sequences which exist solely because of relativistic effects. Dissipation leading to loss of angular momentum causes a star to evolve in a quasi-stationary fashion along an evolutionary sequence. Supramassive sequences evolve towards eventual catastrophic collapse to a black hole. Prior to collapse, the star must spin up as it loses angular momentum, an effect which may provide an observational precursor to gravitational collapse to a black hole.

Cook, Gregory B.↗
NASA NTRS1994

GHRS Spectroscopy of individual stars in R136a

The installation of the Corrective Optics Space Telescope Axial Replacement (COSTAR) Instrument on the Hubble Space Telescope (HST) makes it possible to observe stars in very crowded regions with high spatial and spectral purity. To demonstrate this capability, we have used the Goddard High Resolution Spectrograph (GHRS) to obtain spectra of two stars in the dense center of the 30 Doradus ionizing cluster: R136a5, and its nearest neighbor, R136a2, only 0.17 sec away. R136a5 is shown to ben an O3f/WN star, while R136a2 is a WN4-w star. From both Wide Field/Planetary Camera (WFPC) photometry and GHRS, spectroscopy we estimate the following properties of R136a5: T(sub eff) = 42,500 K, R = 16.4 solar radius, L(sub bol) = 8 x 10(exp 5) solar luminosity, and M approx. equals 50 solar mass -- all indicating that, despite its spectral type, R136a5, as indicated by the strength of He II lambda 1640 emission. The observed mass-loss rate, dot-M = 1.8 x 10(exp -5) solar mass/yr, is an order of magnitude higher than is assumed by current stellar evolutionary models. We argue that this high rate of mass loss will alter drastically the evolutionary path of R136a5. If so, evolutionary models for massive stars require substantial revision.

Heap, Sara R.↗
NASA NTRS1995

Tests of two convection theories for red giant and red supergiant envelopes

Two theories of stellar envelope convection are considered here in the context of red giants and red supergiants of intermediate to high mass: Boehm-Vitense's standard mixing-length theory (MLT) and Canuto & Mazzitelli's new theory incorporating the full spectrum of turbulence (FST). Both theories assume incompressible convection. Two formulations of the convective mixing length are also evaluated: l proportional to the local pressure scale height (H(sub P)) and l proportional to the distance from the upper boundary of the convection zone (z). Applications to test both theories are made by calculating stellar evolutionary sequences into the red zone (z). Applications to test both theories are made by calculating stellar evolutionary sequences into the red phase of core helium burning. Since the theoretically predicted effective temperatures for cool stars are known to be sensitive to the assigned value of the mixing length, this quantity has been individually calibrated for each evolutionary sequence. The calibration is done in a composite Hertzsprung-Russell diagram for the red giant and red supergiant members of well-observed Galactic open clusters. The MLT model requires the constant of proportionality for the convective mixing length to vary by a small but statistically significant amount with stellar mass, whereas the FST model succeeds in all cases with the mixing lenghth simply set equal to z. The structure of the deep stellar interior, however, remains very nearly unaffected by the choices of convection theory and mixing lenghth. Inside the convective envelope itself, a density inversion always occurs, but is somewhat smaller for the convectively more efficient MLT model. On physical grounds the FST model is preferable, and seems to alleviate the problem of finding the proper mixing length.

Stothers, Richard B.↗
NASA NTRS1997

Improving Search Properties in Genetic Programming

With the advancing computer processing capabilities, practical computer applications are mostly limited by the amount of human programming required to accomplish a specific task. This necessary human participation creates many problems, such as dramatically increased cost. To alleviate the problem, computers must become more autonomous. In other words, computers must be capable to program/reprogram themselves to adapt to changing environments/tasks/demands/domains. Evolutionary computation offers potential means, but it must be advanced beyond its current practical limitations. Evolutionary algorithms model nature. They maintain a population of structures representing potential solutions to the problem at hand. These structures undergo a simulated evolution by means of mutation, crossover, and a Darwinian selective pressure. Genetic programming (GP) is the most promising example of an evolutionary algorithm. In GP, the structures that evolve are trees, which is a dramatic departure from previously used representations such as strings in genetic algorithms. The space of potential trees is defined by means of their elements: functions, which label internal nodes, and terminals, which label leaves. By attaching semantic interpretation to those elements, trees can be interpreted as computer programs (given an interpreter), evolved architectures, etc. JSC has begun exploring GP as a potential tool for its long-term project on evolving dextrous robotic capabilities. Last year we identified representation redundancies as the primary source of inefficiency in GP. Subsequently, we proposed a method to use problem constraints to reduce those redundancies, effectively reducing GP complexity. This method was implemented afterwards at the University of Missouri. This summer, we have evaluated the payoff from using problem constraints to reduce search complexity on two classes of problems: learning boolean functions and solving the forward kinematics problem. We have also developed and implemented methods to use additional problem heuristics to fine-tune the searchable space, and to use typing information to further reduce the search space. Additional improvements have been proposed, but they are yet to be explored and implemented.

Janikow, Cezary Z.↗
NASA NTRS1998

Toward Evolvable Hardware Chips: Experiments with a Programmable Transistor Array

Evolvable Hardware is reconfigurable hardware that self-configures under the control of an evolutionary algorithm. We search for a hardware configuration can be performed using software models or, faster and more accurate, directly in reconfigurable hardware. Several experiments have demonstrated the possibility to automatically synthesize both digital and analog circuits. The paper introduces an approach to automated synthesis of CMOS circuits, based on evolution on a Programmable Transistor Array (PTA). The approach is illustrated with a software experiment showing evolutionary synthesis of a circuit with a desired DC characteristic. A hardware implementation of a test PTA chip is then described, and the same evolutionary experiment is performed on the chip demonstrating circuit synthesis/self-configuration directly in hardware.

Stoica, Adrian↗
NASA NTRS2000

The Evolution of Sulfide Tolerance in the Cyanobacteria

Understanding how the function of extant microorganisms has recorded both their evolutionary histories and their past interactions with the environment is a stated goal of astrobiology. We are taking a multidisciplinary approach to investigate the diversification of sulfide tolerance mechanisms in the cyanobacteria, which vary both in their degree of exposure to sulfide and in their capacity to tolerate this inhibitor of photosynthetic electron transport. Since conditions were very reducing during the first part of Earth's history and detrital sulfides have been found in Archean sediments, mechanisms conferring sulfide tolerance may have been important for the evolutionary success of the ancestors of extant cyanobacteria. Two tolerance mechanisms have been identified in this group: (1) resistance of photosystem II, the principal target of sulfide toxicity; and (2) maintenance of the ability to fix carbon despite photosystem II inhibition by utilizing sulfide as an electron donor in photosystem I - dependent, anoxygenic photosynthesis. We are presently collecting comparative data on aspects of sulfide physiology for laboratory clones isolated from a variety of habitats. These data will be analyzed within a phylogenetic framework inferred from molecular sequence data collected for these clones to test how frequently different mechanisms of tolerance have evolved and which tolerance mechanism evolved first. In addition, by analyzing these physiological data together with environmental sulfide data collected from our research sites using microelectrodes, we can also test whether the breadth of an organism's sulfide tolerance can be predicted from the magnitude of variation in environmental sulfide concentration it has experienced in its recent evolutionary past and whether greater average sulfide concentration and/or temporal variability in sulfide favors the evolution of a particular mechanism of sulfide tolerance.

Miller, Scott R.↗
NASA NTRS1990

Space Station Freedom Central Thermal Control System Evolution

The objective of the evolution study is to review the proposed growth scenarios for Space Station Freedom and identify the major CTCS hardware scars and software hooks required to facilitate planned growth and technology obsolescence. The Station's two leading evolutionary configurations are: (1) the Research and Development node, where the fundamental mission is scientific research and commercial endeavors, and (2) the Transportation node, where the emphasis is on supporting Lunar and Mars human exploration. These two nodes evolve from the from the assembly complete configuration by the addition of manned modules, pocket labs, resource nodes, attached payloads, customer servicing facility, and an upper and lower keel and boom truss structure. In the case of the R & D node, the role of the dual keel will be to support external payloads for scientific research. In the case of the Transportation node, the keel will support the Lunar (LTV) and Mars (MTV) transportation vehicle service facilities In addition to external payloads. The transverse boom is extended outboard of the alpha gimbal to accommodate the new solar dynamic arrays for power generation, which will supplement the photovoltaic system. The design, development, deployment, and operation of SSF will take place over a 30 year time period and new Innovations and maturation in technologies can be expected. Evolutionary planning must include the obsolescence and insertion of the new technologies over the life of the program, and the technology growth issues must be addressed in parallel with the development of the baseline thermal control system. Technologies that mature and are available within the next 10 years are best suited for evolutionary consideration as the growth phase begins in the year 2000. To increase TCS capability to accommodate growth using baseline technology would require some penalty in mass, volume, EVA time, manifesting, and operational support. To be cost effective the capabilities of the heat acquisition, transport, and rejection subsystems must be increased.

Bullock, Richard↗
NASA NTRS1990

Operations Modeling for SSF Evolution

The operations required to support the on-orbit Space Station Freedom activities planned or being studied will be complex. Operational capability to perform tasks will be dependent on many factors such as manpower availability, logistics, other tasks being worked and Space Station configuration. This effort uses information available about these and other factors to perform operations analysis for given missions and determine the feasibility of target configuration concepts to support those missions. Studies have been conducted to determine processing requirements for a number of potential evolutionary missions on the Space Station Freedom. These studies have identified the need for growth of the Space Station in various ways. Some of the studies have dealt with the operational needs for the particular mission that they are concerned with, but none have looked at the total evolutionary operations requirement. In order to pursue the subject of overall on-orbit operations to any appreciable level of detail, data bases of operational on-orbit tasks need to be compiled, and an analysis tool is needed to assist the analyst. A number of existing operations tools have been reviewed, and none have been found to satisfactorily perform the functions needed to analyze integrated operations requirements for the evolutionary Space Station Freedom. However, during the tool review, some existing applications were found to provide subsets of the required functionality, and these are being considered for incorporation into the analysis tool.

Ganoe, George G.↗
NASA NTRS1988

Rooting the archaebacterial tree: the pivotal role of Thermococcus celer in archaebacterial evolution

The sequence of the 16S ribosomal RNA gene from the archaebacterium Thermococcus celer shows the organism to be related to the methanogenic archaebacteria rather than to its phenotypic counterparts, the extremely thermophilic archaebacteria. This conclusion turns on the position of the root of the archaebacterial phylogenetic tree, however. The problems encountered in rooting this tree are analyzed in detail. Under conditions that suppress evolutionary noise both the parsimony and evolutionary distance methods yield a root location (using a number of eubacterial or eukaryotic outgroup sequences) that is consistent with that determined by an "internal rooting" method, based upon an (approximate) determination of relative evolutionary rates.

Non-NASA Center↗
NASA NTRS1987

Adaptation, plant evolution, and the fossil record

The importance of adaptation in determining patterns of evolution has become an important focus of debate in evolutionary biology. As it pertains to paleobotany, the issue is whether or not adaptive evolution mediated by natural selection is sufficient to explain the stratigraphic distributions of taxa and character states observed in the plant fossil record. One means of addressing this question is the functional evaluation of stratigraphic series of plant organs set in the context of paleoenvironmental change and temporal patterns of floral composition within environments. For certain organ systems, quantitative estimates of biophysical performance can be made on the basis of structures preserved in the fossil record. Performance estimates for plants separated in time or space can be compared directly. Implicit in different hypotheses of the forces that shape the evolutionary record (e.g. adaptation, mass extinction, rapid environmental change, chance) are predictions about stratigraphic and paleoenvironmental trends in the efficacy of functional performance. Existing data suggest that following the evolution of a significant structural innovation, adaptation for improved functional performance can be a major determinant of evolutionary changes in plants; however, there are structural and development limits to functional improvement, and once these are reached, the structure in question may no longer figure strongly in selection until and unless a new innovation evolves. The Silurian-Devonian paleobotanical record is consistent with the hypothesis that the succession of lowland floodplain dominants preserved in the fossil record of this interval was determined principally by the repeated evolution of new taxa that rose to ecological importance because of competitive advantages conferred by improved biophysical performance. This does not seem to be equally true for Carboniferous-Jurassic dominants of swamp and lowland floodplain environments. In these cases, environmental disruption appears to have been a major factor in shaping the fossil record. This does not mean that continuing adaptation was not important during this interval, but it may indicate that adaptive evolution was strongest in environments other than those best represented in the paleobotanical record.

NASA Discipline Exobiology↗
NASA NTRS1989

The biology of mass extinction: a palaeontological view

Extinctions are not biologically random: certain taxa or functional/ecological groups are more extinction-prone than others. Analysis of molluscan survivorship patterns for the end-Cretaceous mass extinctions suggests that some traits that tend to confer extinction resistance during times of normal ('background') levels of extinction are ineffectual during mass extinction. For genera, high species-richness and possession of widespread individual species imparted extinction-resistance during background times but not during the mass extinction, when overall distribution of the genus was an important factor. Reanalysis of Hoffman's (1986) data (Neues Jb. Geol. Palaont. Abh. 172, 219) on European bivalves, and preliminary analysis of a new northern European data set, reveals a similar change in survivorship rules, as do data scattered among other taxa and extinction events. Thus taxa and adaptations can be lost not because they were poorly adapted by the standards of the background processes that constitute the bulk of geological time, but because they lacked--or were not linked to--the organismic, species-level or clade-level traits favoured under mass-extinction conditions. Mass extinctions can break the hegemony of species-rich, well-adapted clades and thereby permit radiation of taxa that had previously been minor faunal elements; no net increase in the adaptation of the biota need ensue. Although some large-scale evolutionary trends transcend mass extinctions, post extinction evolutionary pathways are often channelled in directions not predictable from evolutionary patters during background times.

Non-NASA Center↗
NASA NTRS2000

Evolution of thermotolerance in hot spring cyanobacteria of the genus Synechococcus

The extension of ecological tolerance limits may be an important mechanism by which microorganisms adapt to novel environments, but it may come at the evolutionary cost of reduced performance under ancestral conditions. We combined a comparative physiological approach with phylogenetic analyses to study the evolution of thermotolerance in hot spring cyanobacteria of the genus Synechococcus. Among the 20 laboratory clones of Synechococcus isolated from collections made along an Oregon hot spring thermal gradient, four different 16S rRNA gene sequences were identified. Phylogenies constructed by using the sequence data indicated that the clones were polyphyletic but that three of the four sequence groups formed a clade. Differences in thermotolerance were observed for clones with different 16S rRNA gene sequences, and comparison of these physiological differences within a phylogenetic framework provided evidence that more thermotolerant lineages of Synechococcus evolved from less thermotolerant ancestors. The extension of the thermal limit in these bacteria was correlated with a reduction in the breadth of the temperature range for growth, which provides evidence that enhanced thermotolerance has come at the evolutionary cost of increased thermal specialization. This study illustrates the utility of using phylogenetic comparative methods to investigate how evolutionary processes have shaped historical patterns of ecological diversification in microorganisms.

Synechococcus Group/classification/growth & develo↗