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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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At least 631 records · Page 35
All sourcesNASA NTRSDOE OSTI
DOE OSTI2017

The East Asian origin of the giant lobelias

PREMISE OF THE STUDY: Rapid radiations are difficult to reconstruct when organismal diversification and biogeographic movement outpace the evolution of genes typically used in phylogenetic analyses. The 125 kb of unique sequence from complete plastid genomes (= plastomes) largely solves the molecular sampling problem, and taxon sampling that triangulates the base of each major subclade largely solves the long‐branch attraction problem. This combination of molecular and phylogenetic sampling is used to reconstruct the cosmopolitan radiation of lobeliads, with special focus on the origin of the giant lobelias. METHODS: An alignment of 18 previously generated and 61 new plastomes was analyzed to produce the phylogenetic estimate upon which the biogeographic reconstruction was based. KEY RESULTS: Originating in southern Africa, the Lobeliaceae underwent a spectacular cosmopolitan radiation about 20 million years ago. One lineage colonized Madagascar and eastern Asia, which was the source area for the evolution of the giant lobelias. A second lineage colonized the Mediterranean and North America, in quick succession. South America and Australia were also colonized from South Africa, most likely as independent events, but detailed biogeographic reconstruction is limited by inferred extinction events. The south Pacific segregate genera Apetahia and Sclerotheca are inferred to have Hawaiian ancestry. The East African radiation independently reached Ethiopia, West Africa, and Brazil. CONCLUSIONS: With adequate molecular and taxon sampling, many details of rapid radiations can be accurately inferred. However, not all lineages survived, and analyses of extant species cannot recover details that have been lost due to extinction.

Knox, Eric B.↗
NASA NTRS1972

Outer magnetosphere near midnight at quiet and disturbed times.

Ogo 5 magnetic-field and energetic-electron (E greater than 50 keV) data are used to study both the quiet-time, steady-state configuration of the outer magnetosphere or near tail region near midnight and the disturbed time changes of this configuration. The nighttime cusp is found to be a distinct feature within the plasma sheet at quiet times but indistinguishable from the plasma sheet at disturbed times. The sequence of thinning and expansion of the plasma sheet in this region in association with the substorms is studied. The response of the plasma sheet in the near tail at about 10 earth radii is found to be similar to that in the more distant tail at more than 20 earth radii. Finally, the nature of field-aligned currents flowing on the plasma-sheet boundary is investigated. Assuming infinite current sheets, the sheet current density at Ogo 5 is found to be approximately .01 A/m.

Aubry, M. P.↗
NASA NTRS2012

Sampling South Pole-Aitken Basin: The Moonrise Approach

The South Pole-Aitken basin (SPA) is the largest of the giant impact basins in the inner Solar System, and its location on Earth s Moon makes it the most accessible. Exploration of SPA through direct collection and analysis of representative materials addresses issues as fundamental as the characteristics of the chemical reservoir from which the Moon originated, early differentiation and production of crust and development of global asymmetry, relationships between magmatic activity and internal thermal evolution, and effects of giant impact events on the terrestrial planets. Owing to its great size and superposition relationships with other lunar impact basins, SPA is the oldest and as such anchors the lunar chronology. Moreover, numerous large impact craters and basins are contained within it such that materials (rocks) of the SPA basin contain a record of the early impact chronology, one less likely to have been affected by the large, late nearside basins (e.g., Imbrium). Understanding the early basin chronology is key to deciphering the sequence and effects of early giant impact bombardment of the inner Solar System. That record exists on the Moon, and materials of the SPA basin will allow us to read that record. Knowledge of the early bombardment history will test - and may reshape - a key paradigm relating to early Solar System evolution. Did the planets form with the alignment of today, or was there a major reorientation of the giant planets that led to destabilization of asteroid orbits, and a cataclysmic bombardment of the inner Solar System hundreds of millions of years after accretion of the planets? Implications include understanding environments for early life-supporting habitats on Earth and Mars, and relationships to new observations of extra-solar planetary systems.

Jolliff, B. L.↗
DOE OSTI2025

Decay of the proton-unbound superradiant state in 13 N

Here, the 12 C ( 3 He, 𝑑)⁢ 13 N* reaction is studied in an experiment with a high-resolution magnetic spectrograph, in coincidence with protons detected in silicon detectors near the target. This allows for the observation of angular correlation patterns between the proton transfer and proton decays from populated unbound resonances. A formalism describing the spin polarization of direct reactions is developed to analyze these correlations, and is verified on the known directionally asymmetric decay distributions arising from parity mixing in the 13 N ⁡($\frac{3}{2}$ − , $\frac{5}{2}$ + ) doublet. The same formalism is used to study the decays from the continuum-aligned, broad 3/2 + resonance at 7.9 MeV excitation energy, which arises from superradiant coupling. The observed asymmetric angular correlation patterns are approximately reproduced by adding an “artificial” 3/2 − resonance with strength equal to that of the reaction formalism. This parity-mixing approach serves as a first approximation to a more advanced reaction model of rapid reaction and decay sequences.

13N↗
DOE OSTI2022

Craspase is a CRISPR RNA-guided, RNA-activated protease

The CRISPR-Cas type III-E RNA-targeting effector complex gRAMP/Cas7-11 is associated with a caspase-like protein (TPR-CHAT/Csx29) to form Craspase (CRISPR-guided caspase). Here, we use cryo–electron microscopy snapshots of Craspase to explain its target RNA cleavage and protease activation mechanisms. Target-guide pairing extending into the 5' region of the guide RNA displaces a gating loop in gRAMP, which triggers an extensive conformational relay that allosterically aligns the protease catalytic dyad and opens an amino acid side-chain–binding pocket. We further define Csx30 as the endogenous protein substrate that is site-specifically proteolyzed by RNA-activated Craspase. This protease activity is switched off by target RNA cleavage by gRAMP and is not activated by RNA targets containing a matching protospacer flanking sequence. We thus conclude that Craspase is a target RNA–activated protease with self-regulatory capacity.

Science & Technology - Other Topics↗
DOE OSTI2012

Computational analysis of pathogen-borne metallo β-lactamases reveals discriminating structural features between B1 types

Background: Genes conferring antibiotic resistance to groups of bacterial pathogens are cause for considerable concern, as many once-reliable antibiotics continue to see a reduction in efficacy. The recent discovery of the metallo b-lactamase blaNDM-1 gene, which appears to grant antibiotic resistance to a variety of Enterobacteriaceae via a mobile plasmid, is one example of this distressing trend. The following work describes a computational analysis of pathogen-borne MBLs that focuses on the structural aspects of characterized proteins. Results: Using both sequence and structural analyses, we examine residues and structural features specific to various pathogen-borne MBL types. This analysis identifies a linker region within MBL-like folds that may act as a discriminating structural feature between these proteins, and specifically resistance-associated acquirable MBLs. Recently released crystal structures of the newly emerged NDM-1 protein were aligned against related MBL structures using a variety of global and local structural alignment methods, and the overall fold conformation is examined for structural conservation. Conservation appears to be present in most areas of the protein, yet is strikingly absent within a linker region, making NDM-1 unique with respect to a linker-based classification scheme. Variability analysis of the NDM-1 crystal structure highlights unique residues in key regions as well as identifying several characteristics shared with other transferable MBLs. Conclusions: A discriminating linker region identified in MBL proteins is highlighted and examined in the context of NDM-1 and primarily three other MBL types: IMP-1, VIM-2 and ccrA. The presence of an unusual linker region variant and uncommon amino acid composition at specific structurally important sites may help to explain the unusually broad kinetic profile of NDM-1 and may aid in directing research attention to areas of this protein, and possibly other MBLs, that may be targeted for inactivation or attenuation of enzymatic activity.

59 BASIC BIOLOGICAL SCIENCES↗
NASA NTRS1986

Chromospheric and transition region structure of the Herbig emission stars HR 5999 and BN Ori

The IUE spectra of HR 5999 and BN Ori were analyzed, showing strong emission lines of C II, C IV, O I, and Si IV (also Mg II in HR 5999), indicating the presence of chromospheres and transition regions around these high mass premain sequence (PMS) stars. Infrared, optical, and ultraviolet observations show that BN Ori has a spectral type of FO-2 IIIe, a bolometric luminosity of 36 L, age 1.5 million yr, and mass 2 to 2.5 solar mass. As HR 5999 fades, the ratio of total to selective absorption increases indicating the appearance of larger grains or changes in grain alignment. Emission measure distributions are used to investigate the atmospheric structure of the stars. As HR 5999 fades the emission measure distribution rises systematically and the inferred transition region pressures increase. The transition region and chromospheric radiative losses are large and imply input mechanical energy fluxes similar to those of lower mass PMS stars.

Brown, A.↗
DOE OSTI2011

GALACTIC CEPHEIDS WITH SPITZER. II. SEARCH FOR EXTENDED INFRARED EMISSION

A deep and detailed examination of 29 classical Cepheids with the Spitzer Space Telescope has revealed three stars with strong nearby extended emission detected in multiple bands which appears to be physically associated with the stars. RS Pup was already known to possess extended infrared emission, while the extended emission around the other two stars (S Mus and {delta} Cep) is newly discovered in our observations. Four other stars (GH Lup, l Car, T Mon, and X Cyg) show tentative evidence for extended infrared emission. An unusual elongated extended object next to SZ Tau appears to be a background or foreground object in a chance alignment with the Cepheid. The inferred mass-loss rate upper limits for S Mus and {delta} Cep are in the range from 10{sup -9} to 10{sup -8} M{sub sun} yr{sup -1}, with the upper limit for RS Pup as high as 10{sup -6} M{sub sun} yr{sup -1}. Mass loss during post-main-sequence evolution has been proposed as a resolution to the discrepancy between pulsational and dynamical masses of Cepheid variable stars: dust in the lost material would make itself known by the presence of an infrared bright nebula or unresolved infrared excess. The observed frequency of infrared circumstellar emission (<24%) and the mass-loss rate we estimate for our sources show that dusty mass loss can only account for part of the Cepheid mass-loss discrepancy. Nevertheless, our direct evidence that mass loss is active during the Cepheid phase is an important confirmation that these processes need to be included in evolutionary and pulsation models of these stars and should be taken into account in the calibration of the Cepheid distance scale.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2013

Magnetic and gravitational disk-star interactions: an interdependence of PMS stellar rotation rates and spin-orbit misalignments

The presence of giant gaseous planets that reside in close proximity to their host stars, i.e., hot Jupiters, may be a consequence of large-scale radial migration through the protoplanetary nebulae. Within the framework of this picture, significant orbital obliquities characteristic of a substantial fraction of such planets can be attributed to external torques that perturb the natal disks out of alignment with the spin axes of their host stars. Therefore, the acquisition of orbital obliquity likely exhibits sensitive dependence on the physics of disk-star interactions. Here, we analyze the primordial excitation of spin-orbit misalignment of Sun-like stars in light of disk-star angular momentum transfer. We begin by calculating the stellar pre-main-sequence rotational evolution, accounting for spin-up due to gravitational contraction and accretion as well as spin-down due to magnetic star-disk coupling. We devote particular attention to angular momentum transfer by accretion, and show that while generally subdominant to gravitational contraction, this process is largely controlled by the morphology of the stellar magnetic field (that is, specific angular momentum accreted by stars with octupole-dominated surface fields is smaller than that accreted by dipole-dominated stars by an order of magnitude). Subsequently, we examine the secular spin-axis dynamics of disk-bearing stars, accounting for the time-evolution of stellar and disk properties, and demonstrate that misalignments are preferentially excited in systems where stellar rotation is not overwhelmingly rapid. Moreover, we show that the excitation of spin-orbit misalignment occurs impulsively through an encounter with a resonance between the stellar precession frequency and the disk-torquing frequency. Cumulatively, the model developed herein opens up a previously unexplored avenue toward understanding star-disk evolution and its consequences in a unified manner.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2020

High-throughput mapping of the phage resistance landscape in E. coli

Bacteriophages (phages) are critical players in the dynamics and function of microbial communities and drive processes as diverse as global biogeochemical cycles and human health. Phages tend to be predators finely tuned to attack specific hosts, even down to the strain level, which in turn defend themselves using an array of mechanisms. However, to date, efforts to rapidly and comprehensively identify bacterial host factors important in phage infection and resistance have yet to be fully realized. Here, we globally map the host genetic determinants involved in resistance to 14 phylogenetically diverse double-stranded DNA phages using two model Escherichia coli strains (K-12 and BL21) with known sequence divergence to demonstrate strain-specific differences. Using genome-wide loss-of-function and gain-of-function genetic technologies, we are able to confirm previously described phage receptors as well as uncover a number of previously unknown host factors that confer resistance to one or more of these phages. We uncover differences in resistance factors that strongly align with the susceptibility of K-12 and BL21 to specific phage. We also identify both phage specific mechanisms, such as the unexpected role of cyclic-di-GMP in host sensitivity to phage N4, and more generic defenses, such as the overproduction of colanic acid capsular polysaccharide that defends against a wide array of phages. Our results indicate that host responses to phages can occur via diverse cellular mechanisms. Our systematic and high-throughput genetic workflow to characterize phage-host interaction determinants can be extended to diverse bacteria to generate datasets that allow predictive models of how phage-mediated selection will shape bacterial phenotype and evolution. The results of this study and future efforts to map the phage resistance landscape will lead to new insights into the coevolution of hosts and their phage, which can ultimately be used to design better phage therapeutic treatments and tools for precision microbiome engineering.

59 BASIC BIOLOGICAL SCIENCES↗
NASA NTRS1976

A remote sensing-aided small grains inventory using sequential Landsat imagery

A procedure for manual acreage estimation from Landsat imagery is proposed which involves a stepwise sequence of area stratification, simple size estimation, acreage estimation, and acreage precision calculation. The sample design consists of a systematic point sample of the Landsat imagery for crop type presence calibrated by a double sample of several image points having crop season-coincident ground data. The sample point layout chosen for cost-efficiency in manual sampling is a doubly aligned point matrix. The significant advantage of this sampling approach is that crop information is available from throughout the agricultural reporting unit. For technique demonstration purposes three strata were selected for sampling. The proposed technique can complement more sophisticated computer-based acreage estimation methodologies, and refinements in the sampling techniques promise significant improvements for operational utility.

Thomas, R. W.↗
DOE OSTI2015

BARIUM SURFACE ABUNDANCES OF BLUE STRAGGLERS IN THE OPEN CLUSTER NGC 6819

We present a barium surface abundance of 12 blue stragglers (BSs) and 18 main-sequence (MS) stars in the intermediate-age open cluster NGC 6819 (2.5 Gyr) based on spectra obtained from the Hydra Multi-object Spectrograph on the WIYN 3.5 m telescope. For the MS stars we find [Fe/H] = +0.05 ± 0.04 and [Ba/Fe] = −0.01 ± 0.10. The majority of the BS stars are consistent with these values. We identify five BSs with significant barium enhancement. These stars most likely formed through mass transfer from an asymptotic giant branch star that polluted the surface of the BS with the nucleosynthesis products generated during thermal pulsations. This conclusion aligns with the results from the substantial work done on the BSs in old open cluster NGC 188 that identifies mass transfer as the dominant mechanism for BS formation in that open cluster. However, four of the BSs with enhanced barium show no radial-velocity evidence for a companion. The one star that is in a binary is a double-lined system, meaning the companion is not a white dwarf and not the remnant of a prior AGB star. In this paper we attempt to develop a consistent scenario to explain the origin of these five BSs.

79 ASTRONOMY AND ASTROPHYSICS↗
NASA NTRS1988

A model of electronic map interpretation

This paper describes an experiment that provides data for the development of a cognitive model of pilot flight navigation. The model views navigation as a process involving the alignment of mental images with the perceptual view out of the cockpit. The data support a three stage model: (1) the perceptual encoding of the map display, (2) mental rotation of the mental image, and (3) comparison of the image to the environment. The variables that significantly influence the processes embodied in the model in decreasing importance are: speed of processing, display sequencing, map complexity, and rotation angle of the map. The model can be used as a preliminary computational tool in predicting the navigational component of pilot situational awareness.

Aretz, Anthony J.↗
DOE OSTI2016

SU-D-207A-01: Female Pelvic Synthetic CT Generation Based On Joint Shape and Intensity Analysis

Purpose: To develop a method for generating female pelvic synthetic CT (MRCT) images from a single MR scan and evaluate its utility in radiotherapy. Methods: Under IRB-approval, an imaging sequence (T1-VIBE-Dixon) was acquired for 10 patients. This sequence yields 3 useful image volumes of different contrast (“in-phase” T1-weighted, fat and water). A previously published pelvic bone shape model was used to generate a rough bone mask for each patient. A modified fuzzy c-means classification was performed on the multi spectral MR data, with a regularization term that utilizes the prior knowledge provided by the bone mask and addresses the intensity overlap between different tissue types. A weighted sum of classification probabilities with attenuation values yielded MRCT volumes. The mean absolute error (MAE) between MRCT and real CT on various regions was calculated following deformable alignment (Velocity). Intensity modulated Treatment plans based on actual CT and MRCT were made and compared. Results: The average/standard deviation of MAE across 10 patients was 10.1/6.7 HU for muscle, 6.7/4.6 HU for fat, 136.9/53.5 HU for bony tissues under 850 HU (97% of total bone volume), 188.9/119.3 HU for bony tissues above 850 HU and 17.3/13.3 HU for intrapelvic soft tissues. Calculated doses were comparable for plans generated on CT and calculated using MRCT densities or vice versa, with differences in PTV D99% (mean/σ) of (–0.1/0.2 Gy) and (0.3/0.2 Gy), PTV D0.5cc of (–0.3/0.2 Gy) and (–0.4/1.7 Gy). OAR differences were similarly small for comparable structures, with differences in bowel V50Gy of (–0.3/0.2%) and (0.0/0.2%), femur V30Gy of (0.7/1.2%) and (0.2/1.2%), sacrum V20GY of (0.0/0.1%) and (–0.1/1.1%) and mean pelvic V20Gy of (0.0/0.1%) and (0.6/1.8%). Conclusion: MRCT based on a single imaging sequence in the female pelvis is feasible, with acceptably small variations in attenuation estimates and calculated doses to target and critical organs. Work supported by NIHR01EB016079.

60 APPLIED LIFE SCIENCES↗
DOE OSTI2021

Understanding the Reactions Between Fe and Se Binary Diffusion Couples

Spurred by recent discoveries of high-temperature superconductivity in Fe-Se based materials, the magnetic, electronic, and catalytic properties of iron-chalcogenides have drawn significant attention. Furthermore, much remains to be understood about the sequence of phase formation in these systems. In this work, we shed light on this issue by preparing a series of binary Fe-Se ultrathin diffusion couples via designed thin film precursors and investigating their structural evolution as a function of composition and annealing temperature. Two previously unreported Fe-Se phases crystallized during the deposition process on a nominally room-temperature Si substrate in the 27-33% and 37-47% Fe (atomic percent) composition regimes. Both phases completely decompose after annealing to 200°C in a nitrogen glovebox. At higher temperatures, the sequence of phase formation is governed by Se loss in the annealing process, consistent with what would be expected from the phase diagram. Films rich in Fe (53-59% Fe) crystalized during deposition as β-FeSe (P4/nmm) with preferred c-axis orientation to the amorphous SiO 2 substrate surface, providing a means to non-epitaxial self-assembly of crystallographically aligned, iron-rich β-FeSe for future research. Our findings suggest the crystallization of binary Fe-Se compounds at room temperature via near diffusionless transformations should be a significant consideration in future attempts to prepare metastable ternary and higher order compounds containing Fe and Se.

36 MATERIALS SCIENCE↗
NASA NTRS1994

Cusp/cleft auroral activity in relation to solar wind dynamic pressure, interplanetary magnetic field B(sub z) and B(sub y)

Continuous optical observations of cusp/cleft auroral activities within approximately equal to 09-15 MLT and 70-76 deg magnetic latitude are studied in relation to changes in solar wind dynamic pressure and interplanetary magnetic field (IMF) variability. The observed latitudinal movements of the cusp/cleft aurora in response to IMF B(sub z) changes may be explained as an effect of a variable magnetic field intensity in the outer dayside magnetosphere associated with the changing intensity of region 1 field-aligned currents and associated closure currents. Ground magnetic signatures related to such currents were observed in the present case (January 10, 1993). Strong, isolated enhancements in solar wind dynamic pressure (Delta p/p is greater than or equal to 0.5) gave rise to equatorward shifts of the cusp/cleft aurora, characteristic auroral transients, and distinct ground magnetic signatures of enhanced convection at cleft latitudes. A sequence of auroral events of approximately equal to 5-10 min recurrence time, moving eastward along the poleward boundary of the persistent cusp/cleft aurora in the approximately equal to 10-14 MLT sector, during negative IMF B(sub z) and B(sub y) conditions, were found to be correlated with brief pulses in solar wind dynamic pressure (0.1 is less than Delta p/p is less than 0.5). Simultaneous photometer observations from Ny Alesund, Svalbard, and Danmarkshavn, Greenland, show that the events often appeared on the prenoon side (approximately equal to 10-12 MLT), before moving into the postnoon sector in the case we study here, when IMF B(sub y) is less than 0. In other cases, similar auroral event sequences have been observed to move westward in the prenoon sector, during intervals of positive B(sub y). Thus a strong prenoon/postnoon asymmetry of event occurence and motion pattern related to the IMF B(sub y) polarity is observed. We find that this category of auroral event sequence is stimulated bursts of electron precipitation that originate from magnetosheath plasma that has accessed that dayside magnetosphere in the noon or near-noon sector, possibly at high latitudes, partly governed by the IMF orientation as well as by solar wind dynamic pressure pulses.

Sandholt, P. E.↗
DOE OSTI2022

CAPG: comprehensive allopolyploid genotyper

Genotyping by sequencing is a powerful tool for investigating genetic variation in plants, but many economically important plants are allopolyploids, where homoeologous similarity obscures the subgenomic origin of reads and confounds allelic and homoeologous SNPs. Recent polyploid genotyping methods use allelic frequencies, rate of heterozygosity, parental cross or other information to resolve read assignment, but good subgenomic references offer the most direct information. The typical strategy aligns reads to the joint reference, performs diploid genotyping within each subgenome, and filters the results, but persistent read misassignment results in an excess of false heterozygous calls. We introduce the Comprehensive Allopolyploid Genotyper (CAPG), which formulates an explicit likelihood to weight read alignments against both subgenomic references and genotype individual allopolyploids from whole-genome resequencing data. We demonstrate CAPG in allotetraploids, where it performs better than Genome Analysis Toolkit’s HaplotypeCaller applied to reads aligned to the combined subgenomic references.

59 BASIC BIOLOGICAL SCIENCES↗
NASA NTRS1984

Space station architecture, module, berthing hub, shell assembly, berthing mechanism and utility connection channel

The geometric form of a space station is presented that includes a description of a plurality of modules and berthing hubs, joined by interconnections which are sideways connectable. The modules and hubs are fastened together in a triangular configuration in three dimensions. The interconnections include a pair of opposed, axially aligned, flanged ports and a clamp latch formed from a plurality of sections hinged along their length and extending circumferentially around the flanged ports. A hermetic seal is formed between the ports. A utilities connection channel extends between the ports. The channel has a shell with utilities connectors movable between an extended position to mating connectors in the modules and a withdrawn position. Assembly sequence and common module shell structure is detailed.

Cohen, M. M.↗