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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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At least 649 records · Page 36
All sourcesNASA NTRSDOE OSTI
DOE OSTI2020

Complete Genome Sequence of Sulfurospirillum Strain ACS TCE , a Tetrachloroethene-Respiring Anaerobe Isolated from Contaminated Soil

Here, we report the complete genome sequence of the tetrachloroethene-to-trichloroethene dechlorinator Sulfurospirillum sp. strain ACS TCE . The genome consists of a 38.05-kb circular plasmid and a 2.69-Mb circular chromosome, which encodes 3 identical reductive dehalogenases with 91.47% amino acid identity to the PceA of Sulfurospirillum multivorans strain DSM 12446.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2021

Exploring Proteomes of Robust Yarrowia lipolytica Isolates Cultivated in Biomass Hydrolysate Reveals Key Processes Impacting Mixed Sugar Utilization, Lipid Accumulation, and Degradation

Yarrowia lipolytica is an important industrial oleaginous yeast due to its robust phenotypes for effective conversion of inhibitory lignocellulosic biomass hydrolysates into neutral lipids. While lipid accumulation has been well characterized in this organism, its interconnected lipid degradation phenotype is poorly understood during fermentation of biomass hydrolysates.

proteomic analysis↗
DOE OSTI2023

PVEMC: isolating the flavor-dependent EMC effect using parity-violating inelastic scattering in SoLID

In order to better understand the EMC effect, we propose a clean and precise measurement of the flavor dependence of the EMC effect using parity-violating deep inelastic scattering on a 48 Ca target. This measurement will provide an extremely sensitive test for flavor dependence in the modification of nuclear parton distribution functions (PDFs) for neutron-rich nuclei. A measurement of the flavor dependence will provide new and vital information and help to explain nucleon modification at the quark level. In addition to helping understand the origin of the EMC effect, a flavor-dependent nuclear pdf modification could significantly impact a range of processes, including neutrino-nucleus scattering, nuclear Drell-Yan processes, and e-A observables at the Electron-Ion Collider. The parity-violating asymmetry A PV from 48 Ca using an 11 GeV beam at 80 μA will be measured using the SoLID detector, proposed for a series of measurements in Hall A at Jefferson Lab. In 68 days of data taking, we will reach 0.7–1.3% statistical precision for 0.2 < x < 0.7 with 0.6–0.7 systematic uncertainties. Here, the goal is to make the first direct measurement of the flavor dependence of the EMC effect. The precision of the measurement will allow for quantification of the flavor-dependent effects, greatly improving our ability to differentiate between models of the EMC effect and constraining the u- and d-quark contributions in neutron rich nuclei.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗
DOE OSTI2021

Search for squarks and gluinos in final states with one isolated lepton, jets, and missing transverse momentum at $\sqrt{s}=13$ with the ATLAS detector

The results of a search for gluino and squark pair production with the pairs decaying via the lightest charginos into a final state consisting of two W bosons, the lightest neutralinos ($\tilde{χ}^0_1$), and quarks, are presented: the signal is characterised by the presence of a single charged lepton (e ± or μ ± ) from a W boson decay, jets, and missing transverse momentum. The analysis is performed using 139 fb -1 of proton–proton collision data taken at a centre-of-mass energy √s=13 delivered by the Large Hadron Collider and recorded by the ATLAS experiment. No statistically significant excess of events above the Standard Model expectation is found. Limits are set on the direct production of squarks and gluinos in simplified models. Masses of gluino (squark) up to 2.2 (1.4 ) are excluded at 95% confidence level for a light $\tilde{χ}^0_1$.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗
DOE OSTI2022

Observation of electroweak production of two jets in association with an isolated photon and missing transverse momentum, and search for a Higgs boson decaying into invisible particles at 13 TeV with the ATLAS detector

This paper presents a measurement of the electroweak production of two jets in association with a Zγ pair, with the Z boson decaying into two neutrinos. It also presents a search for invisible or partially invisible decays of a Higgs boson with a mass of 125 GeV produced through vector-boson fusion with a photon in the final state. These results use data from LHC proton–proton collisions at $\sqrt{s}$ = 13 TeV collected with the ATLAS detector and corresponding to an integrated luminosity of 139 fb -1 . The event signature, shared by all benchmark processes considered for the measurements and searches, is characterized by a significant amount of unbalanced transverse momentum and a photon in the final state, in addition to a pair of forward jets. Electroweak $Zγ$ production in association with two jets is observed in this final state with a significance of 5.2 (5.1 expected) standard deviations. The measured fiducial cross-section for this process is 1.31 ± 0.29 fb. An observed (expected) upper limit of 0.37 (0.34$^{+0.15}_{-0.10}$) at 95% confidence level is set on the branching ratio of a 125 GeV Higgs boson to invisible particles, assuming the Standard Model production cross-section. The signature is also interpreted in the context of decays of a Higgs boson into a photon and a dark photon. An observed (expected) 95% CL upper limit on the branching ratio for this decay is set at 0.018 (0.017$^{+0.007}_{-0.005}$), assuming the Standard Model production cross-section for a 125 GeV Higgs boson.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗
DOE OSTI2025

SlimIO: Lightweight I/O Path Design for Write Isolation in FDP-backed In-Memory Databases

In-Memory Databases (IMDBs) are widely used with HPC applications to manage transient data, often using snapshot-based persistence for backups. Redis, a representative IMDB, employs both snapshot and Write-Ahead Log (WAL) mechanisms, storing data on persistent devices via the traditional kernel I/O path. This method incurs syscall overhead, I/O contention between processes, and SSD garbage collection (GC) delays. To address these issues, we propose SlimIO, which adopts I/O passthru to minimize syscall overhead and inter-process I/O interference. Additionally, it leverages Flexible Data Placement (FDP) SSDs as backup storage to avoid performance degradation from SSD GC. Experimental results show that SlimIO reduces snapshot time by up to 25%, increases query throughput by up to 30% during non-snapshot periods, and lowers 99.9%-ile latency by up to 50%. Furthermore, it achieves a write amplification factor (WAF) of 1.00, indicating no redundant internal writes, thus extending SSD lifespan.

Lee, Sangyun [Sogang University]↗
DOE OSTI2022

Comparison of Lagrangian Superdroplet and Eulerian Double-Moment Spectral Microphysics Schemes in Large-Eddy Simulations of an Isolated Cumulus Congestus Cloud

Abstract Advanced microphysics schemes (such as Eulerian bin and Lagrangian superdroplet) are becoming standard tools for cloud physics research and parameterization development. This study compares a double-moment bin scheme and a Lagrangian superdroplet scheme via large-eddy simulations of nonprecipitating and precipitating cumulus congestus clouds. Cloud water mixing ratio in the bin simulations is reduced compared to the Lagrangian simulations in the upper part of the cloud, likely from numerical diffusion, which is absent in the Lagrangian approach. Greater diffusion in the bin simulations is compensated by more secondary droplet activation (activation above cloud base), leading to similar or somewhat higher droplet number concentrations and smaller mean droplet radius than the Lagrangian simulations for the nonprecipitating case. The bin scheme also produces a significantly larger standard deviation of droplet radius than the superdroplet method, likely due to diffusion associated with the vertical advection of bin variables. However, the spectral width in the bin simulations is insensitive to the grid spacing between 50 and 100 m, suggesting other mechanisms may be compensating for diffusion as the grid spacing is modified. For the precipitating case, larger spectral width in the bin simulations initiates rain earlier and enhances rain development in a positive feedback loop. However, with time, rain formation in the superdroplet simulations catches up to the bin simulations. Offline calculations using the same drop size distributions in both schemes show that the different numerical methods for treating collision–coalescence also contribute to differences in rain formation. The stochastic collision–coalescence in the superdroplet method introduces more variability in drop growth for a given rain mixing ratio.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2025

TRISO Particle Isolation and Graphite Removal Using SRNL Vapor Digestion Technology

Tri-structural isotropic fueled reactors are planned to come online in the next decade, but there is not currently a widely agreed upon disposition pathway for this new fuel stream. For long term used nuclear fuel storage, there would be a significant benefit if the waste volume could be reduced or mitigated. Most of the volume from used TRISO fuel contains graphite. SRNL currently has an active patent which describes one pathway to digest the graphite. One benefit in the utilization of this pathway is that multiple cylindrical pieces can be stacked end-to-end in a reaction tube, then nitric acid and water vapor can be flowed through the tube, and the weight change of the individual cores can provide both a reaction profile and overall oxidant use efficiency. The reaction of nitric acid and graphite passes through a series of intermediate products – NO 2 , NO, and N 2 O – from reaction and decomposition to eventually form N2. The data shows that NO2 grows in with increasing temperature between 500-600°C and then decreases by way of either reaction with graphite or decomposition. Nitric oxide, a reaction and thermal decomposition product of NO 2 , exhibits a consistent decline as a function of temperature, which is consistent with the literature. Similarly, the concentrations of N 2 O and N 2 increase as a function of temperature as their reactions with graphite become more favorable.

Advanced Reactors↗
DOE OSTI2025

Bacteria isolated from the grape phyllosphere capable of degrading guaiacol, a main volatile phenol associated with smoke taint in wine

Recent wildfires near vineyards in the Pacific United States have caused devastating financial losses due to smoke taint in wine. When wine grapes (Vitis vinifera) are exposed to wildfire smoke, their berries absorb volatile phenols derived from the lignin of burning plant material. Volatile phenols are released during the winemaking process giving the finished wine an unpleasant, smokey, and ashy taste known as smoke taint. Bacteria are capable of undergoing a wide variety of metabolic processes and therefore present great potential for bioremediation applications in many industries. In this study, we identify two strains of the same species that colonize the grape phyllosphere and are able to degrade guaiacol, a main volatile phenol responsible for smoke taint in wine. We identify the suite of genes that enable guaiacol degradation in Gordonia alkanivorans via RNAseq of cells growing on guaiacol as a sole carbon source. Additionally, we knockout guaA, a cytochrome P450 gene involved in the conversion of guaiacol to catechol; ΔguaA cells cannot catabolize guaiacol in vitro, providing evidence that GuaA is necessary for this process. Furthermore, we analyze the microbiome of berries and leaves exposed to smoke in the vineyard to investigate the impact of smoke on the grape microbial community. We found smoke has a significant but small effect on the microbial community, leading to an enrichment of several genera belonging to the Bacilli class. Collectively, this research shows that studying microbes and their enzymes has the potential to identify novel tools for alleviating smoke taint.

Castro, Claudia [United States Department of Agric↗
DOE OSTI2025

Sequencing and analysis of 131 SARS-CoV-2 isolates in previously sampled and unsampled regions of Jordan from 2020 to 2023

The Hashemite Kingdom of Jordan remains an understudied country for next generation sequencing analysis of SARS-CoV-2 genomes collected during the 2019 pandemic. Here we provide 131 additional reference genomes collected between 2020–2023 from SARS-CoV-2-positive patients across Jordan. Phylogenetic analysis supports existing pandemic narratives of changing clade dominance over time and adds genomes in novel Jordanian locations and timepoints to make Jordan SARS-CoV-2 databases more comprehensive. Samples from the less-sequenced cities of Ajloun, Jaresh, Karak, and Madaba identified previously unreported lineages while Amman, Irbid, and Zarqa have existing sequencing efforts bolstered. Despite many incomplete patient records and a relatively small sample size, we observe interesting symptom patterns that support existing global and Jordanian pandemic narratives. We note how in-country COVID-19 pandemic genomic studies showcase Jordan’s efforts to expand next generation sequencing capabilities, especially through the leveraging of EDGE COVID-19, a bioinformatics platform for performing rapid, batched analysis of SARS-CoV-2 sequencing that streamlines sample processing prepared from a network of hospital locations.

60 APPLIED LIFE SCIENCES↗
DOE OSTI2024

Isolation and characterization of IgG3 glycan-targeting antibodies with exceptional cross-reactivity for diverse viral families

Broadly reactive antibodies that target sequence-diverse antigens are of interest for vaccine design and monoclonal antibody therapeutic development because they can protect against multiple strains of a virus and provide a barrier to evolution of escape mutants. Using LIBRA-seq (linking B cell receptor to antigen specificity through sequencing) data for the B cell repertoire of an individual chronically infected with human immunodeficiency virus type 1 (HIV-1), we identified a lineage of IgG3 antibodies predicted to bind to HIV-1 Envelope (Env) and influenza A Hemagglutinin (HA). Two lineage members, antibodies 2526 and 546, were confirmed to bind to a large panel of diverse antigens, including several strains of HIV-1 Env, influenza HA, coronavirus (CoV) spike, hepatitis C virus (HCV) E protein, Nipah virus (NiV) F protein, and Langya virus (LayV) F protein. We found that both antibodies bind to complex glycans on the antigenic surfaces. Antibody 2526 targets the stem region of influenza HA and the N-terminal domain (NTD) region of SARS-CoV-2 spike. A crystal structure of 2526 Fab bound to mannose revealed the presence of a glycan-binding pocket on the light chain. Antibody 2526 cross-reacted with antigens from multiple pathogens and displayed no signs of autoreactivity. These features distinguish antibody 2526 from previously described glycan-reactive antibodies. Further study of this antibody class may aid in the selection and engineering of broadly reactive antibody therapeutics and can inform the development of effective vaccines with exceptional breadth of pathogen coverage.

Microbiology↗
DOE OSTI2020

Shape Optimization for Control and Isolation of Structural Vibrations in Aerospace and Defense Applications

Among the main challenges in shape optimization is the coupling of Finite Element Method (FEM) codes in a way that facilitates efficient computation of shape derivatives. This is particularly difficult with multi-physics problems involving legacy codes, where the costs of implementing and maintaining shape derivative capabilities are prohibitive. There are two mathematically equivalent approaches to computing the shape derivative: the volume method, and the boundary method. Each has a major drawback: the boundary method is less accurate, while the volume method is more invasive to the FEM code. Prior implementations of shape derivatives at Sandia have been based on the volume method. We introduce the strip method, which computes shape derivatives on a strip adjacent to the boundary. The strip method makes code coupling simple. Like the boundary method, it queries the state and adjoint solutions at quadrature nodes, but requires no knowledge of the FEM code implementations. At the same time, it exhibits the higher accuracy of the volume method. The development of the strip method also offers us the opportunity to share some lessons learned about implementing the volume method and boundary method, to show shape optimization results on problems of interest, and to begin addressing the other main challenges at hand: constraints on optimized shapes, and their interplay with optimization algorithms.

97 MATHEMATICS AND COMPUTING↗